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🍽️ methionine-choline-deficient diet {methionine-choline deprivation" diet}

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  1. Liver Injury: The MCD diet is designed to induce liver injury, characterized by the accumulation of fat in the liver (hepatic steatosis), inflammation (steatohepatitis), and eventually fibrosis and cirrhosis. By depriving the liver of methionine and choline, the MCD diet disrupts lipid metabolism, leading to the development of NAFLD-like symptoms in animal models.

  2. Non-Alcoholic Fatty Liver Disease (NAFLD) Research: The MCD diet is commonly used in preclinical research to model NAFLD, a condition characterized by the accumulation of fat in the liver in the absence of significant alcohol consumption. NAFLD is a prevalent liver disorder associated with obesity, insulin resistance, and metabolic syndrome.

  3. Liver Fibrosis and Cirrhosis: Prolonged exposure to the MCD diet can lead to the progression of liver injury to more advanced stages, including fibrosis and cirrhosis. These conditions involve the excessive deposition of scar tissue in the liver, impairing liver function and potentially leading to liver failure and hepatocellular carcinoma (liver cancer).

  4. Oxidative Stress and Inflammation: The MCD diet-induced liver injury is associated with increased oxidative stress and inflammation within the liver. The depletion of methionine and choline disrupts antioxidant defenses and promotes the production of reactive oxygen species (ROS) and pro-inflammatory cytokines, contributing to tissue damage and disease progression.

  5. Metabolic Dysfunction: Methionine and choline are essential nutrients involved in various metabolic pathways, including lipid metabolism, one-carbon metabolism, and the synthesis of phospholipids and neurotransmitters. Deprivation of these nutrients on the MCD diet can disrupt metabolic homeostasis and contribute to systemic metabolic dysfunction.

  6. Experimental Tool for Liver Disease Research: Despite its limitations and relevance primarily to animal models, the MCD diet serves as a valuable experimental tool for studying the pathogenesis of NAFLD and liver fibrosis and evaluating potential therapeutic interventions for these conditions.

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Data Contradictions β€” Limits of Certainity

Impacted of methionine-choline-deficient diet {methionine-choline deprivation" diet} On Probiotics

Rank Probiotic Impact
genus Bifidobacterium Reduces
species Bacteroides uniformis Increases
species Bifidobacterium adolescentis Reduces
species Bifidobacterium animalis Reduces
species Bifidobacterium bifidum Reduces
species Bifidobacterium breve Reduces
species Bifidobacterium catenulatum Reduces
species Bifidobacterium longum Reduces
species Bifidobacterium pseudocatenulatum Reduces
species Bifidobacterium pseudolongum Reduces
species Phocaeicola coprocola Increases

Bacteria Impacted by methionine-choline-deficient diet {methionine-choline deprivation" diet}

We extend modifiers to include items that changes the parent and child taxa. I.e. for a species, that would be the genus that is belongs to and the strains in the species.

πŸ§™?

πŸ““ Direct Citations πŸ‘ͺπŸ‘Ά Indirect Citations Taxonomy Rank Effect
0 1 Bacteroidota/Chlorobiota group clade Decreases
0 1 Terrabacteria group clade Increases
1 0 Bacteroidia class Decreases
1 0 Christensenellaceae family Decreases
1 0 Coriobacteriaceae family Decreases
1 0 Enterobacteriaceae family Decreases
1 0 Eubacteriaceae family Decreases
1 0 Lactobacillaceae family Decreases
1 0 Rikenellaceae family Decreases
0 1 Peptostreptococcaceae family Decreases
0 1 Odoribacteraceae family Decreases
0 1 Comamonadaceae family Decreases
0 1 Coprobacillaceae family Decreases
0 1 Lachnospiraceae family Decreases
0 1 Sutterellaceae family Decreases
0 1 Barnesiellaceae family Decreases
2 0 Bifidobacteriaceae family Increases
0 1 Corynebacteriaceae family Increases
1 0 Actinomycetaceae family Increases
1 0 Bacteroidaceae family Increases
1 0 Oxalobacteraceae family Increases
1 0 Ruminococcaceae family Increases
2 0 Oscillospiraceae family Increases
1 0 Alistipes genus Decreases
1 0 Coprobacillus genus Decreases
1 0 Coprococcus genus Decreases
1 0 Delftia genus Decreases
1 0 Eubacterium genus Decreases
1 0 Intestinibacter genus Decreases
1 0 Roseburia genus Decreases
1 0 Sutterella genus Decreases
1 1 Bifidobacterium genus Decreases
0 1 Acetobacterium genus Decreases
0 1 Acetobacteroides genus Decreases
0 1 Alkalibacter genus Decreases
0 1 Alkalibaculum genus Decreases
0 1 Aminicella genus Decreases
0 1 Anaerocella genus Decreases
0 1 Anaerofustis genus Decreases
0 1 Atlantibacter genus Decreases
0 1 Buttiauxella genus Decreases
0 1 Candidatus Ishikawella genus Decreases
0 1 Candidatus Moranella genus Decreases
0 1 Candidatus Phlomobacter genus Decreases
0 1 Candidatus Profftia genus Decreases
0 1 Candidatus Riesia genus Decreases
0 1 Candidatus Schneideria genus Decreases
0 1 Cedecea genus Decreases
0 1 Citrobacter genus Decreases
0 1 Collinsella genus Decreases
0 1 Coriobacterium genus Decreases
0 1 Cronobacter genus Decreases
0 1 Enorma genus Decreases
0 1 Enterobacter genus Decreases
0 1 Entomohabitans genus Decreases
0 1 Escherichia genus Decreases
0 1 Franconibacter genus Decreases
0 1 Gallalistipes genus Decreases
0 1 Gallibacter genus Decreases
0 1 Garciella genus Decreases
0 1 Intestinibacillus genus Decreases
0 1 Jejubacter genus Decreases
0 1 Kluyvera genus Decreases
0 1 Kosakonia genus Decreases
0 1 Leclercia genus Decreases
0 1 Lelliottia genus Decreases
0 1 Mangrovibacter genus Decreases
0 1 Metakosakonia genus Decreases
0 1 Millionella genus Decreases
0 1 Mucinivorans genus Decreases
0 1 Olegusella genus Decreases
0 1 Parvibacter genus Decreases
0 1 Phytobacter genus Decreases
0 1 Plesiomonas genus Decreases
0 1 Pluralibacter genus Decreases
0 1 Pseudescherichia genus Decreases
0 1 Pseudocitrobacter genus Decreases
0 1 Pseudoramibacter genus Decreases
0 1 Rikenella genus Decreases
0 1 Ruminofilibacter genus Decreases
0 1 Salmonella genus Decreases
0 1 Scandinavium genus Decreases
0 1 Senegalimassilia genus Decreases
0 1 Shigella genus Decreases
0 1 Shimwellia genus Decreases
0 1 Siccibacter genus Decreases
0 1 Superficieibacter genus Decreases
0 1 Tidjanibacter genus Decreases
0 1 Trabulsiella genus Decreases
0 1 Yokenella genus Decreases
0 1 Coprobacter genus Decreases
0 2 Aeriscardovia genus Increases
0 2 Alloscardovia genus Increases
0 2 Bombiscardovia genus Increases
0 2 Galliscardovia genus Increases
0 2 Gardnerella genus Increases
0 2 Neoscardovia genus Increases
0 2 Parascardovia genus Increases
0 2 Pseudoscardovia genus Increases
0 2 Scardovia genus Increases
0 1 Acutalibacter genus Increases
0 1 Drancourtella genus Increases
0 1 Harryflintia genus Increases
0 1 Massilimalia genus Increases
0 1 Mediterranea genus Increases
0 1 Neobittarella genus Increases
0 1 Phocaeicola genus Increases
0 1 Provencibacterium genus Increases
0 1 Acetanaerobacterium genus Increases
0 1 Acetivibrio genus Increases
0 1 Agathobaculum genus Increases
0 1 Anaerofilum genus Increases
0 1 Anaeromassilibacillus genus Increases
0 1 Anaerorhabdus genus Increases
0 1 Anaerotruncus genus Increases
0 1 Angelakisella genus Increases
0 1 Bittarella (ex Durand et al. 2017) genus Increases
0 1 Candidatus Soleaferrea genus Increases
0 1 Caproiciproducens genus Increases
0 1 Ethanoligenens genus Increases
0 1 Faecalibacterium genus Increases
0 1 Flavonifractor genus Increases
0 1 Fournierella genus Increases
0 1 Gemmiger genus Increases
0 1 Gorbachella genus Increases
0 1 Hydrogenoanaerobacterium genus Increases
0 1 Negativibacillus genus Increases
0 1 Neglectibacter genus Increases
0 1 Oscillospira genus Increases
0 1 Papillibacter genus Increases
0 1 Phocea genus Increases
0 1 Pseudoflavonifractor genus Increases
0 1 Ruminococcus genus Increases
0 1 Ruthenibacterium genus Increases
0 1 Sporobacter genus Increases
0 1 Subdoligranulum genus Increases
1 0 Bacteroides genus Increases
0 1 Coriobacteriaceae incertae sedis no rank Decreases
0 1 Enterobacteriaceae incertae sedis no rank Decreases
0 1 environmental samples no rank Decreases
0 1 environmental samples no rank Decreases
0 1 environmental samples no rank Decreases
0 1 environmental samples no rank Decreases
0 1 environmental samples no rank Decreases
0 1 environmental samples no rank Decreases
0 1 environmental samples no rank Decreases
0 1 environmental samples no rank Decreases
0 1 environmental samples no rank Decreases
0 1 environmental samples no rank Decreases
0 1 environmental samples no rank Decreases
0 1 Eubacteriaceae incertae sedis no rank Decreases
0 1 Klebsiella/Raoultella group no rank Decreases
0 1 Rikenellaceae incertae sedis no rank Decreases
0 1 unclassified Alistipes no rank Decreases
0 1 unclassified Bifidobacterium no rank Decreases
0 1 unclassified Coprobacillus no rank Decreases
0 1 unclassified Coprococcus no rank Decreases
0 1 unclassified Coriobacteriaceae no rank Decreases
0 1 unclassified Delftia no rank Decreases
0 1 unclassified Enterobacteriaceae no rank Decreases
0 1 unclassified Eubacteriaceae no rank Decreases
0 1 unclassified Eubacterium (in: firmicutes) no rank Decreases
0 1 unclassified Rikenellaceae no rank Decreases
0 1 unclassified Roseburia no rank Decreases
0 1 unclassified Sutterella no rank Decreases
0 2 unclassified Bifidobacteriaceae (miscellaneous) no rank Increases
0 1 Bacteroidaceae incertae sedis no rank Increases
0 1 environmental samples no rank Increases
0 1 environmental samples no rank Increases
0 1 unclassified Bacteroidaceae no rank Increases
0 1 unclassified Bacteroides no rank Increases
0 1 Oscillospiraceae incertae sedis no rank Increases
0 1 environmental samples norank Increases
0 1 Enterobacterales order Decreases
0 1 Lactobacillales order Decreases
0 1 Coriobacteriales order Decreases
0 1 Bacteroidales order Increases
0 2 Bifidobacteriales order Increases
0 1 Actinomycetales order Increases
0 1 Burkholderiales order Increases
0 2 Eubacteriales order Increases
1 0 Actinomycetota phylum Decreases
1 0 Bacteroidota phylum Decreases
0 1 Spirochaetota phylum Increases
1 0 Bacillota phylum Increases
0 1 Bacteroides bouchesdurhonensis QSV445 Increases
1 0 Eubacterium coprostanoligenes species Decreases
0 1 Alistipes sp. 56_11 species Decreases
0 1 Alistipes sp. AL-1 species Decreases
0 1 Alistipes sp. cv1 species Decreases
0 1 Alistipes sp. DJF_B185 species Decreases
0 1 Alistipes sp. EBA6-25cl2 species Decreases
0 1 Alistipes sp. HGB5 species Decreases
0 1 Alistipes sp. NML05A004 species Decreases
0 1 Alistipes sp. RMA 9912 species Decreases
0 1 Alistipes sp. S457 species Decreases
0 1 Bifidobacterium sp. species Decreases
0 1 Bifidobacterium sp. 113 species Decreases
0 1 Bifidobacterium sp. 120 species Decreases
0 1 Bifidobacterium sp. 138 species Decreases
0 1 Bifidobacterium sp. 65947 species Decreases
0 1 Bifidobacterium sp. h12 species Decreases
0 1 Bifidobacterium sp. JCM 6439 species Decreases
0 1 Bifidobacterium sp. M45 species Decreases
0 1 Bifidobacterium sp. MC_8 species Decreases
0 1 Bifidobacterium sp. MSTE12 species Decreases
0 1 Bifidobacterium sp. MSX5B species Decreases
0 1 Bifidobacterium sp. PL1 species Decreases
0 1 Eubacterium sp. species Decreases
0 1 Eubacterium sp. 3_1_31 species Decreases
0 1 Eubacterium sp. ARC-2 species Decreases
0 1 Eubacterium sp. ER2 species Decreases
0 1 Eubacterium sp. oral strain A35MT species Decreases
0 1 Eubacterium sp. SA11 species Decreases
0 1 Lachnospira eligens species Decreases
0 1 [Eubacterium] cellulosolvens species Decreases
0 1 Alistipes communis species Decreases
0 1 Alistipes dispar species Decreases
0 1 Alistipes finegoldii species Decreases
0 1 Alistipes hominis species Decreases
0 1 Alistipes ihumii species Decreases
0 1 Alistipes indistinctus species Decreases
0 1 Alistipes inops species Decreases
0 1 Alistipes massiliensis species Decreases
0 1 Alistipes megaguti species Decreases
0 1 Alistipes montrealensis species Decreases
0 1 Alistipes obesi species Decreases
0 1 Alistipes onderdonkii species Decreases
0 1 Alistipes provencensis species Decreases
0 1 Alistipes putredinis species Decreases
0 1 Alistipes senegalensis species Decreases
0 1 Alistipes shahii species Decreases
0 1 Alistipes sp. species Decreases
0 1 Alistipes sp. AF14-19 species Decreases
0 1 Alistipes timonensis species Decreases
0 1 Bifidobacterium actinocoloniiforme species Decreases
0 1 Bifidobacterium adolescentis species Decreases
0 1 Bifidobacterium aesculapii species Decreases
0 1 Bifidobacterium angulatum species Decreases
0 1 Bifidobacterium animalis species Decreases
0 1 Bifidobacterium asteroides species Decreases
0 1 Bifidobacterium avesanii species Decreases
0 1 Bifidobacterium biavatii species Decreases
0 1 Bifidobacterium bifidum species Decreases
0 1 Bifidobacterium bohemicum species Decreases
0 1 Bifidobacterium bombi species Decreases
0 1 Bifidobacterium boum species Decreases
0 1 Bifidobacterium breve species Decreases
0 1 Bifidobacterium callitrichidarum species Decreases
0 1 Bifidobacterium callitrichos species Decreases
0 1 Bifidobacterium catenulatum species Decreases
0 1 Bifidobacterium choerinum species Decreases
0 1 Bifidobacterium commune species Decreases
0 1 Bifidobacterium coryneforme species Decreases
0 1 Bifidobacterium cuniculi species Decreases
0 1 Bifidobacterium dentium species Decreases
0 1 Bifidobacterium eulemuris species Decreases
0 1 Bifidobacterium faecale species Decreases
0 1 Bifidobacterium gallicum species Decreases
0 1 Bifidobacterium imperatoris species Decreases
0 1 Bifidobacterium indicum species Decreases
0 1 Bifidobacterium lemurum species Decreases
0 1 Bifidobacterium longum species Decreases
0 1 Bifidobacterium magnum species Decreases
0 1 Bifidobacterium merycicum species Decreases
0 1 Bifidobacterium minimum species Decreases
0 1 Bifidobacterium mongoliense species Decreases
0 1 Bifidobacterium moukalabense species Decreases
0 1 Bifidobacterium myosotis species Decreases
0 1 Bifidobacterium porcinum species Decreases
0 1 Bifidobacterium pseudocatenulatum species Decreases
0 1 Bifidobacterium pseudolongum species Decreases
0 1 Bifidobacterium psychraerophilum species Decreases
0 1 Bifidobacterium pullorum species Decreases
0 1 Bifidobacterium reuteri species Decreases
0 1 Bifidobacterium ruminantium species Decreases
0 1 Bifidobacterium saguini species Decreases
0 1 Bifidobacterium scardovii species Decreases
0 1 Bifidobacterium simiae species Decreases
0 1 Bifidobacterium sp. group II-3 species Decreases
0 1 Bifidobacterium sp. N5G01 species Decreases
0 1 Bifidobacterium stellenboschense species Decreases
0 1 Bifidobacterium stercoris species Decreases
0 1 Bifidobacterium subtile species Decreases
0 1 Bifidobacterium thermacidophilum species Decreases
0 1 Bifidobacterium thermophilum species Decreases
0 1 Bifidobacterium tissieri species Decreases
0 1 Bifidobacterium tsurumiense species Decreases
0 1 Candidatus Alistipes avistercoris species Decreases
0 1 Candidatus Alistipes cottocaccae species Decreases
0 1 Candidatus Alistipes excrementavium species Decreases
0 1 Candidatus Alistipes excrementigallinarum species Decreases
0 1 Candidatus Alistipes excrementipullorum species Decreases
0 1 Candidatus Alistipes faecigallinarum species Decreases
0 1 Candidatus Alistipes intestinigallinarum species Decreases
0 1 Candidatus Alistipes merdavium species Decreases
0 1 Candidatus Alistipes merdipullorum species Decreases
0 1 Candidatus Alistipes pullicola species Decreases
0 1 Candidatus Alistipes pullistercoris species Decreases
0 1 Candidatus Alistipes stercorigallinarum species Decreases
0 1 Candidatus Alistipes stercoripullorum species Decreases
0 1 Candidatus Eubacterium faecale species Decreases
0 1 Candidatus Eubacterium faecavium species Decreases
0 1 Candidatus Eubacterium faecipullorum species Decreases
0 1 Coprobacillus cateniformis species Decreases
0 1 Coprobacillus sp. D6 species Decreases
0 1 Coprococcus catus species Decreases
0 1 Coprococcus comes species Decreases
0 1 Coprococcus eutactus species Decreases
0 1 Coprococcus hominis (ex Arizal et al. 2022) species Decreases
0 1 Coprococcus phoceensis species Decreases
0 1 Delftia acidovorans species Decreases
0 1 Delftia deserti species Decreases
0 1 Delftia lacustris species Decreases
0 1 Delftia tsuruhatensis species Decreases
0 1 Eubacterium barkeri species Decreases
0 1 Eubacterium callanderi species Decreases
0 1 Eubacterium limosum species Decreases
0 1 Eubacterium maltosivorans species Decreases
0 1 Eubacterium multiforme species Decreases
0 1 Eubacterium oxidoreducens species Decreases
0 1 Eubacterium plexicaudatum species Decreases
0 1 Eubacterium pyruvativorans species Decreases
0 1 Eubacterium ramulus species Decreases
0 1 Eubacterium rangiferina species Decreases
0 1 Eubacterium ruminantium species Decreases
0 1 Eubacterium segne species Decreases
0 1 Eubacterium sp. AM49-13BH species Decreases
0 1 Eubacterium uniforme species Decreases
0 1 Eubacterium ventriosum species Decreases
0 1 Eubacterium xylanophilum species Decreases
0 1 Roseburia cecicola species Decreases
0 1 Roseburia difficilis species Decreases
0 1 Roseburia faecis species Decreases
0 1 Roseburia hominis species Decreases
0 1 Roseburia intestinalis species Decreases
0 1 Roseburia inulinivorans species Decreases
0 1 Roseburia lenta species Decreases
0 1 Roseburia porci species Decreases
0 1 Roseburia rectibacter species Decreases
0 1 Roseburia yibonii species Decreases
0 1 Roseburia zhanii species Decreases
0 1 Sutterella faecalis species Decreases
0 1 Sutterella massiliensis species Decreases
0 1 Sutterella megalosphaeroides species Decreases
0 1 Sutterella parvirubra species Decreases
0 1 Sutterella sanguinus species Decreases
0 1 Sutterella seckii species Decreases
0 1 Sutterella stercoricanis species Decreases
0 1 Sutterella wadsworthensis species Decreases
0 1 Bacteroides acidifaciens species Increases
0 1 Bacteroides caccae species Increases
0 1 Bacteroides caecigallinarum species Increases
0 1 Bacteroides caecimuri species Increases
0 1 Bacteroides caecimuris species Increases
0 1 Bacteroides cellulosilyticus species Increases
0 1 Bacteroides chinchillae species Increases
0 1 Bacteroides clarus species Increases
0 1 Bacteroides congonensis species Increases
0 1 Bacteroides coprosuis species Increases
0 1 Bacteroides cutis species Increases
0 1 Bacteroides denticanum species Increases
0 1 Bacteroides difficilis species Increases
0 1 Bacteroides eggerthii species Increases
0 1 Bacteroides faecalis species Increases
0 1 Bacteroides faecichinchillae species Increases
0 1 Bacteroides faecis species Increases
0 1 Bacteroides faecium species Increases
0 1 Bacteroides finegoldii species Increases
0 1 Bacteroides fluxus species Increases
0 1 Bacteroides fragilis species Increases
0 1 Bacteroides galacturonicus species Increases
0 1 Bacteroides gallinaceum species Increases
0 1 Bacteroides gallinarum species Increases
0 1 Bacteroides graminisolvens species Increases
0 1 Bacteroides helcogenes species Increases
0 1 Bacteroides heparinolyticus species Increases
0 1 Bacteroides humanifaecis species Increases
0 1 Bacteroides ihuae species Increases
0 1 Bacteroides ilei species Increases
0 1 Bacteroides intestinalis species Increases
0 1 Bacteroides koreensis species Increases
0 1 Bacteroides kribbi species Increases
0 1 Bacteroides luhongzhouii species Increases
0 1 Bacteroides luti species Increases
0 1 Bacteroides mediterraneensis species Increases
0 1 Bacteroides muris (ex Fokt et al. 2023) species Increases
0 1 Bacteroides ndongoniae species Increases
0 1 Bacteroides nordii species Increases
0 1 Bacteroides oleiciplenus species Increases
0 1 Bacteroides ovatus species Increases
0 1 Bacteroides parvus species Increases
0 1 Bacteroides propionicifaciens species Increases
0 1 Bacteroides propionicigenes species Increases
0 1 Bacteroides pyogenes species Increases
0 1 Bacteroides reticulotermitis species Increases
0 1 Bacteroides rhinocerotis species Increases
0 1 Bacteroides rodentium species Increases
0 1 Bacteroides salyersiae species Increases
0 1 Bacteroides sp species Increases
0 1 Bacteroides sp. 1_1_30 species Increases
0 1 Bacteroides sp. 2_1_33B species Increases
0 1 Bacteroides sp. 3_1_19 species Increases
0 1 Bacteroides sp. C13EG172 species Increases
0 1 Bacteroides sp. D1 species Increases
0 1 Bacteroides sp. NMBE5 species Increases
0 1 Bacteroides stercorirosoris species Increases
0 1 Bacteroides stercoris species Increases
0 1 Bacteroides thetaiotaomicron species Increases
0 1 Bacteroides timonensis species Increases
0 1 Bacteroides uniformis species Increases
0 1 Bacteroides xylanisolvens species Increases
0 1 Bacteroides zhangwenhongii species Increases
0 1 Bacteroides zoogleoformans species Increases
0 1 Candidatus [Bacteroides] periocalifornicus species Increases
0 1 Candidatus Bacteroides intestinigallinarum species Increases
0 1 Bacteroides sp. species Increases
0 1 Bacteroides sp. 1_1_14 species Increases
0 1 Bacteroides sp. 14(A) species Increases
0 1 Bacteroides sp. 1B2 species Increases
0 1 Bacteroides sp. 2_1_22 species Increases
0 1 Bacteroides sp. 2_2_4 species Increases
0 1 Bacteroides sp. 2011_Ileo_VSA_D11 species Increases
0 1 Bacteroides sp. 2011_Ileo_VSA_D7 species Increases
0 1 Bacteroides sp. 2011_Ileo_VSA_D8 species Increases
0 1 Bacteroides sp. 265d species Increases
0 1 Bacteroides sp. 3_1_23 species Increases
0 1 Bacteroides sp. 3_1_33FAA species Increases
0 1 Bacteroides sp. 3_1_40A species Increases
0 1 Bacteroides sp. 3_2_5 species Increases
0 1 Bacteroides sp. 314-4 species Increases
0 1 Bacteroides sp. 31SF15 species Increases
0 1 Bacteroides sp. 35AE37 species Increases
0 1 Bacteroides sp. 35BE34 species Increases
0 1 Bacteroides sp. 35BE35 species Increases
0 1 Bacteroides sp. 4_1_36 species Increases
0 1 Bacteroides sp. 4_3_47FAA species Increases
0 1 Bacteroides sp. 4072 species Increases
0 1 Bacteroides sp. 6-8 species Increases
0 1 Bacteroides sp. 7853 species Increases
0 1 Bacteroides sp. 9_1_42FAA species Increases
0 1 Bacteroides sp. A1C1 species Increases
0 1 Bacteroides sp. AR20 species Increases
0 1 Bacteroides sp. AR29 species Increases
0 1 Bacteroides sp. baku-33 species Increases
0 1 Bacteroides sp. BLBE-2 species Increases
0 1 Bacteroides sp. CB57 species Increases
0 1 Bacteroides sp. D2 species Increases
0 1 Bacteroides sp. D20 species Increases
0 1 Bacteroides sp. D22 species Increases
0 1 Bacteroides sp. D8 species Increases
0 1 Bacteroides sp. DJF_B097 species Increases
0 1 Bacteroides sp. dnLKV2 species Increases
0 1 Bacteroides sp. dnLKV3 species Increases
0 1 Bacteroides sp. dnLKV7 species Increases
0 1 Bacteroides sp. dnLKV9 species Increases
0 1 Bacteroides sp. EBA5-17 species Increases
0 1 Bacteroides sp. ES-27 species Increases
0 1 Bacteroides sp. HGA0134 species Increases
0 1 Bacteroides sp. HPS0048 species Increases
0 1 Bacteroides sp. J1511 species Increases
0 1 Bacteroides sp. MANG species Increases
0 1 Bacteroides sp. R6 species Increases
0 1 Bacteroides sp. S-17 species Increases
0 1 Bacteroides sp. S-18 species Increases
0 1 Bacteroides sp. SLC1-38 species Increases
0 1 Bacteroides sp. Smarlab 3301643 species Increases
0 1 Bacteroides sp. Smarlab 3302398 species Increases
0 1 Bacteroides sp. 'Smarlab BioMol-2301151' species Increases
0 1 Bacteroides sp. TP-5 species Increases
0 1 Bacteroides sp. UW species Increases
0 1 Bacteroides sp. WA1 species Increases
0 1 Bacteroides sp. WH302 species Increases
0 1 Bacteroides sp. WH305 species Increases
0 1 Bacteroides sp. XB12B species Increases
0 1 Bacteroides sp. XB44A species Increases
0 1 Lacrimispora xylanisolvens species Increases
0 1 Phocaeicola barnesiae species Increases
0 1 Phocaeicola coprocola species Increases
0 1 Phocaeicola coprophilus species Increases
0 1 Phocaeicola dorei species Increases
0 1 Phocaeicola massiliensis species Increases
0 1 Phocaeicola paurosaccharolyticus species Increases
0 1 Phocaeicola plebeius species Increases
0 1 Phocaeicola salanitronis species Increases
0 1 Phocaeicola sartorii species Increases
0 1 Phocaeicola vulgatus species Increases
0 1 Bifidobacterium pullorum subsp. gallinarum subspecies Decreases
0 1 Bifidobacterium pullorum subsp. saeculare subspecies Decreases

Impact of methionine-choline-deficient diet {methionine-choline deprivation" diet} on Conditions from US National Library of Medicine

A higher number indicates impact on more bacteria associated with the condition and confidence on the impact.

We have X bacteria high and Y low reported. We find that the modifier reduces some and increases other of these two groups. We just tally: X|reduces + Y|Increase = Positive   X|increases + Y|decrease = Negative.

Benefit Ratio:
Numbers above 0 have increasing positive effect.
Numbers below 0 have increasing negative effect.

Condition Positive Impact Negative Impact Benefit Ratio Impact
Abdominal Aortic Aneurysm 0.2 0.2 0
Acne 1.9 2.1 -0.11
ADHD 5.1 2.5 1.04
Age-Related Macular Degeneration and Glaucoma 1.3 0.3 3.33
Allergic Rhinitis (Hay Fever) 1 3 -2
Allergies 7.2 4.8 0.5
Allergy to milk products 2.6 3.9 -0.5
Alopecia (Hair Loss) 1.1 1.6 -0.45
Alzheimer's disease 10 9.7 0.03
Amyotrophic lateral sclerosis (ALS) Motor Neuron 3.9 2.7 0.44
Ankylosing spondylitis 4.7 4.9 -0.04
Anorexia Nervosa 5.5 3 0.83
Antiphospholipid syndrome (APS) 0.3 0.2 0.5
Asthma 4.8 4.5 0.07
Atherosclerosis 1.1 4.3 -2.91
Atrial fibrillation 2.9 3 -0.03
Autism 11 10.1 0.09
Autoimmune Disease 1.5 1.7 -0.13
Barrett esophagus cancer 1.1 1.1
benign prostatic hyperplasia 1.8 1.8
Biofilm 0.2 0.2
Bipolar Disorder 4.9 4.3 0.14
Brain Trauma 2.3 1.6 0.44
Breast Cancer 0.4 0.7 -0.75
Cancer (General) 0.2 0.9 -3.5
Carcinoma 3.3 2.4 0.38
Celiac Disease 5.6 6.9 -0.23
Cerebral Palsy 1.2 1.1 0.09
Chronic Fatigue Syndrome 5 3.7 0.35
Chronic Kidney Disease 3.8 3.9 -0.03
Chronic Lyme 1.1 0.5 1.2
Chronic Obstructive Pulmonary Disease (COPD) 2.8 2.8 0
Chronic Urticaria (Hives) 2.3 1 1.3
Coagulation / Micro clot triggering bacteria 1.1 1.3 -0.18
Cognitive Function 3.9 6.6 -0.69
Colorectal Cancer 7.8 5.3 0.47
Constipation 2.2 3.6 -0.64
Coronary artery disease 3.4 3.7 -0.09
COVID-19 12.4 10.3 0.2
Crohn's Disease 10.2 7.8 0.31
Cushing's Syndrome (hypercortisolism) 0.8 0.8
cystic fibrosis 2.3 0.8 1.87
d-lactic acidosis (one form of brain fog) 0.2 0.2
deep vein thrombosis 2.7 1.9 0.42
Denture Wearers Oral Shifts 0.2 0.2
Depression 11.6 14.5 -0.25
Dermatomyositis 2.3 1.3 0.77
Eczema 2.8 2.2 0.27
Endometriosis 3.6 4.1 -0.14
Eosinophilic Esophagitis 1.8 1.8
Epilepsy 6.6 4.5 0.47
erectile dysfunction 1.9 1.3 0.46
Fibromyalgia 3 2 0.5
Functional constipation / chronic idiopathic constipation 7.6 7.6 0
gallstone disease (gsd) 1.1 2.8 -1.55
Gastroesophageal reflux disease (Gerd) including Barrett's esophagus 0.7 2.3 -2.29
Generalized anxiety disorder 1.9 3.9 -1.05
giant cell arteritis 0 0
Glioblastoma 1.6 0.2 7
Gout 2.2 4.3 -0.95
Graves' disease 5.8 3.6 0.61
Gulf War Syndrome 2.4 2.6 -0.08
Halitosis 0.5 0.8 -0.6
Hashimoto's thyroiditis 3.2 1.9 0.68
Heart Failure 2.9 3.7 -0.28
hemorrhagic stroke 0.8 1 -0.25
Hemorrhoidal disease, Hemorrhoids, Piles 0.3 0.5 -0.67
Hidradenitis Suppurativa 0.6 0.6 0
High Histamine/low DAO 1.7 0.8 1.13
hypercholesterolemia (High Cholesterol) 0.7 0.2 2.5
hyperglycemia 1.6 0.4 3
Hyperlipidemia (High Blood Fats) 1.6 2.5 -0.56
hypersomnia 0.2 0.9 -3.5
hypertension (High Blood Pressure 6.9 5.7 0.21
Hypothyroidism 1.1 2.8 -1.55
Hypoxia 0.2 1.3 -5.5
IgA nephropathy (IgAN) 3 3.5 -0.17
Inflammatory Bowel Disease 7.5 9.7 -0.29
Insomnia 7.1 2.8 1.54
Intelligence 0.9 3.4 -2.78
Intracranial aneurysms 1 3.5 -2.5
Irritable Bowel Syndrome 7.6 9.2 -0.21
ischemic stroke 2.9 2.7 0.07
Juvenile idiopathic arthritis 2.1 2.1
Liver Cirrhosis 7.4 5.3 0.4
Long COVID 13.3 13.9 -0.05
Low bone mineral density 1.3 2 -0.54
Lung Cancer 2 1.1 0.82
Lymphoma 0.9 0.6 0.5
Mast Cell Issues / mastitis 0.6 2.4 -3
ME/CFS with IBS 1.3 0.6 1.17
ME/CFS without IBS 1.1 0.6 0.83
Menopause 0.8 0.9 -0.13
Metabolic Syndrome 10.8 9.9 0.09
Mood Disorders 13.1 14.2 -0.08
Multiple Sclerosis 6.1 8.5 -0.39
Multiple system atrophy (MSA) 1.1 0.3 2.67
myasthenia gravis 0.7 1.5 -1.14
neuropathic pain 0.6 1.1 -0.83
Neuropathy (all types) 1.2 2.6 -1.17
neuropsychiatric disorders (PANDAS, PANS) 2.6 0.8 2.25
Nonalcoholic Fatty Liver Disease (nafld) Nonalcoholic 7.7 6.4 0.2
NonCeliac Gluten Sensitivity 2.3 3 -0.3
Obesity 11.9 12.1 -0.02
obsessive-compulsive disorder 3.8 3.4 0.12
Osteoarthritis 2.9 2 0.45
Osteoporosis 5 3.6 0.39
pancreatic cancer 2.1 1.1 0.91
Parkinson's Disease 10.5 8.8 0.19
Peanut Allergy 1.2 -1.2
Polycystic ovary syndrome 7.1 5.8 0.22
Postural orthostatic tachycardia syndrome 0.5 0.8 -0.6
Premenstrual dysphoric disorder 0.3 1 -2.33
primary biliary cholangitis 3.1 0.5 5.2
Primary sclerosing cholangitis 2.5 1.9 0.32
Psoriasis 1.4 4.3 -2.07
rheumatoid arthritis (RA),Spondyloarthritis (SpA) 7.1 7 0.01
Rosacea 2.9 0.9 2.22
Schizophrenia 8.9 7.8 0.14
scoliosis 1.1 0.8 0.38
sensorineural hearing loss 0.5 0.2 1.5
Sjögren syndrome 2.9 2.3 0.26
Sleep Apnea 2.4 4.6 -0.92
Slow gastric motility / Gastroparesis 0.7 1 -0.43
Small Intestinal Bacterial Overgrowth (SIBO) 2.3 2 0.15
Stress / posttraumatic stress disorder 5 2.8 0.79
Systemic Lupus Erythematosus 4.7 5.3 -0.13
Tic Disorder 0.7 2 -1.86
Tourette syndrome 1.2 1.2
Type 1 Diabetes 5.7 6.3 -0.11
Type 2 Diabetes 10.3 10.6 -0.03
Ulcerative colitis 10.3 8.1 0.27
Unhealthy Ageing 2.2 5 -1.27
Vitiligo 0.5 1.7 -2.4

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