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Bacteria by Symptoms by Lab that are high or low

The following is based on uploaded samples annotated with symptoms. Different lab pipelines give different bacteria on the same sample. For background on this issue see The taxonomy nightmare before Christmas…. All of the data is available at Microbiome Prescription Citizen Science Data Share

All items listed are P < 0.005 (or 1 in 200+ chance of happening at random). Using one or more of the following statistical methods:

In rare cases, both high and low may be seen. Typically that is over or under prevalence with lower or higher average

Lab:
Symptom:

The bigger the number after E- (probability), the more signficant is the shift. 0.00E+000 means extremely significant.

P value Bacteria Tax Rank Shift
0.00E+000 Chromatiales order High
0.00E+000 Odoribacter genus Low
0.00E+000 Bilophila genus Low
0.00E+000 Bacteroides faecis species Low
0.00E+000 Comamonadaceae family Low
7.99E-015 Thermoanaerobacteraceae family High
3.77E-014 Bacillaceae family High
6.99E-012 Oribacterium sinus species High
3.42E-011 Nostocales order High
1.15E-010 Gemella cuniculi species High
1.18E-010 Bacteroides cellulosilyticus species Low
4.97E-010 Gemella genus High
4.97E-010 Gemellaceae family High
8.38E-010 Odoribacteraceae family Low
6.84E-009 Oribacterium genus High
8.04E-009 Rhodothermota phylum Low
8.04E-009 Rhodothermia class Low
8.04E-009 Rhodothermales order Low
8.47E-008 Enterococcaceae family High
1.11E-007 Sphingobacterium shayense species Low
0.00E+000 Bifidobacteriaceae family High
0.00E+000 Bifidobacteriales order High
0.00E+000 Bifidobacterium genus High
3.79E-007 Enterobacterales order High
6.81E-007 Enterobacteriaceae family High
7.17E-007 Desulfonatronum genus High
7.17E-007 Desulfonatronaceae family High
7.68E-007 Actinomycetales order High
1.16E-006 Desulfonatronum thiosulfatophilum species High
0.00E+000 Actinomycetota phylum High
0.00E+000 Actinomycetes class High
1.72E-006 Cyanophyceae class High
0.00E+000 Segatella copri species High
5.19E-006 Aedoeadaptatus coxii species High
6.54E-006 cellular organisms no rank High
9.26E-006 Phocaeicola vulgatus species Low
1.04E-005 Burkholderiaceae family Low
1.14E-005 Bacteroides thetaiotaomicron species Low
2.56E-006 Bifidobacterium catenulatum subsp. kashiwanohense subspecies Low
0.00E+000 Segatella genus High
1.56E-005 Segatella maculosa species High
1.59E-005 Bacillales Family X. Incertae Sedis family High
1.91E-005 Cyanobacteriota phylum High
1.91E-005 Cyanobacteriota/Melainabacteria group clade High
2.29E-005 Bacteria superkingdom High
3.11E-015 Bacteroides uniformis species Low
3.38E-005 Coprococcus genus High
3.72E-005 root no rank High
3.81E-005 Eubacteriaceae family High
3.82E-005 Thermodesulfovibrio thiophilus species High
3.99E-005 Candidatus Amoebophilus genus Low
3.99E-005 Candidatus Amoebophilus asiaticus species Low
3.99E-005 Amoebophilaceae family Low
1.65E-005 Bifidobacterium gallicum species High
9.32E-005 Lysobacterales order High
9.42E-005 Prevotella genus High
5.91E-007 Chloroflexota phylum High
5.81E-005 Listeriaceae family High
2.15E-014 Anaerotruncus colihominis species Low
1.33E-004 Eubacteriales incertae sedis no rank Low
1.50E-004 Clostridium caliptrosporum species High
1.64E-004 Megasphaera hominis species Low
1.50E-005 Bifidobacterium adolescentis JCM 15918 strain High
2.46E-006 Holdemanella genus High
2.46E-006 Holdemanella biformis species High
3.39E-011 Gammaproteobacteria class High
2.31E-004 Alkaliphilus genus High
3.33E-013 Bacteroides rodentium species Low
3.10E-004 Eggerthellales order High
3.10E-004 Eggerthellaceae family High
3.21E-004 Rickettsia monacensis species High
7.29E-005 Caldicellulosiruptor bescii species High
1.64E-012 Anaerotruncus genus Low
4.13E-014 Eubacterium genus High
7.72E-005 Prevotella veroralis species High
4.18E-005 Bifidobacterium adolescentis species High
3.73E-004 Tissierellia class High
3.89E-004 Desulfovibrio desulfuricans species High
4.09E-004 Caloramator mitchellensis species High
2.53E-004 Segatella paludivivens species High
1.94E-010 Sphingobacteriaceae family Low
3.45E-004 Epsilonproteobacteria class High
9.65E-011 Coriobacteriia class High
1.27E-010 Hathewaya genus Low
1.27E-010 Hathewaya histolytica species Low
5.40E-004 Streptococcaceae family High
2.22E-015 Bacteroides genus Low
4.10E-004 Campylobacterota phylum High
4.14E-004 Campylobacterales order High
4.09E-005 Bifidobacterium cuniculi species Low
5.63E-004 Brochothrix genus High
1.83E-010 Coriobacteriaceae family High
1.78E-010 Coriobacteriales order High
5.86E-004 Bacteroides denticanum species High
6.06E-004 Alkaliphilus crotonatoxidans species High
7.51E-010 Sphingobacteriales order Low
7.51E-010 Sphingobacteriia class Low
6.44E-004 Leptospiraceae family High
6.44E-004 Leptospira genus High
6.44E-004 Leptospirales order High
3.28E-004 Bacteroides eggerthii species High
5.09E-004 Actinomycetaceae family High
6.61E-004 Leptospira licerasiae species High
5.50E-013 Mycoplasmatota phylum High
5.50E-013 Mollicutes class High
6.64E-004 Shuttleworthella genus High
7.62E-004 Brochothrix thermosphacta species High
7.76E-004 Slackia piriformis species Low
0.00E+000 Lactobacillus genus High
8.01E-004 Prevotellaceae family High
7.87E-004 Streptococcus cristatus species High
9.12E-007 Phocaeicola paurosaccharolyticus species Low
9.05E-004 Thermodesulfovibrionia class High
9.05E-004 Thermodesulfovibrionales order High
9.05E-004 Thermodesulfovibrionaceae family High
9.05E-004 Thermodesulfovibrio genus High
9.85E-004 Rickettsia marmionii Stenos et al. 2005 species High
8.73E-004 Peptostreptococcus stomatis species High
3.32E-004 Desulfitobacteriaceae family High
1.10E-003 Anaerolineae class Low
1.12E-003 Anaerolineae class High
1.13E-003 Nitrospirota phylum High
1.13E-003 Nitrospirales order High
1.13E-003 Nitrospiraceae family High
1.13E-003 Nitrospiria class High
1.08E-003 Acinetobacter genus High
2.27E-005 Bacteroides fluxus species Low
7.62E-004 Alteromonadaceae family High
1.17E-003 Fibrobacterota phylum High
1.17E-003 Fibrobacteria class High
1.17E-003 Fibrobacteraceae family High
1.17E-003 Fibrobacterales order High
1.17E-003 Fibrobacter genus High
3.03E-005 Mycoplasma genus High
1.19E-003 Fibrobacter intestinalis species High
1.24E-003 Verrucomicrobiota phylum High
1.16E-003 Bifidobacterium choerinum species High
7.25E-004 Neisseriaceae family High
3.74E-005 Mycoplasmatales order High
3.74E-005 Mycoplasmataceae family High
3.34E-004 Acetobacterium fimetarium species High
5.46E-004 Myxococcia class High
5.46E-004 Myxococcota phylum High
5.54E-004 Myxococcales order High
8.08E-004 Clostridium malenominatum species High
1.39E-003 Collinsella genus High
1.41E-003 Dyadobacter hamtensis species High
1.34E-003 Peptostreptococcaceae family High
1.45E-003 Oscillatoria genus Low
1.45E-003 Oscillatoria corallinae species Low
2.32E-010 Lactobacillaceae family High
1.57E-003 Brochothrix genus Low
1.60E-003 Caloramator viterbiensis species High
1.63E-003 Segatella oulorum species Low
1.53E-003 Lactococcus genus High
1.45E-003 Heliorestis genus High
5.73E-013 Bacteroidaceae family Low
5.00E-004 Neisseriales order High
1.23E-003 Hoylesella buccalis species High
1.70E-003 Aggregatibacter genus Low
1.82E-003 Caloramator fervidus species Low
1.83E-003 Thermoanaerobacterales Family III. Incertae Sedis family High
1.84E-003 Oscillatoria corallinae species High
1.84E-003 Oscillatoria genus High
3.77E-004 Erysipelothrix inopinata species High
1.99E-003 Fibrobacterales order Low
1.99E-003 Fibrobacteraceae family Low
1.99E-003 Fibrobacteria class Low
1.99E-003 Fibrobacterota phylum Low
1.99E-003 Fibrobacter intestinalis species Low
1.99E-003 Fibrobacter genus Low
1.99E-003 Mogibacterium vescum species High
8.86E-004 Segatella albensis species High
2.05E-003 Bifidobacterium longum species High
1.51E-003 Erysipelothrix inopinata species Low
1.23E-003 Polyangia subclass High
2.01E-003 Streptococcus pseudopneumoniae species High
2.11E-003 Brochothrix thermosphacta species Low
2.21E-003 Terrabacteria group clade High
0.00E+000 Acholeplasmatales order High
0.00E+000 Acholeplasmataceae family High
3.10E-004 Veillonella parvula species High
2.27E-003 Desulfosporosinus genus Low
1.42E-003 Bifidobacterium angulatum species High
2.38E-003 Shewanella upenei species High
2.39E-003 Leptospira genus Low
2.39E-003 Leptospiraceae family Low
2.39E-003 Leptospirales order Low
2.42E-003 Spirochaetia class High
1.80E-003 Streptococcus parasanguinis species High
2.46E-003 Leptospira licerasiae species Low
1.73E-003 Catenibacterium genus High
2.47E-003 Parascardovia genus Low
1.99E-003 unclassified Bacteroidetes Order II. order Low
7.60E-004 Klebsiella oxytoca species Low
2.50E-003 Streptococcus thermophilus species High
2.45E-003 Sutterella stercoricanis species High
2.58E-003 Rothia mucilaginosa species Low
2.38E-003 Ruminiclostridium genus High
2.72E-003 Citrobacter freundii complex species group Low
2.74E-003 Alteromonadaceae family Low
2.77E-003 PVC group clade High
2.32E-003 Saccharopolyspora cebuensis species High
2.18E-003 Devosiaceae family High
2.18E-003 Devosia genus High
1.94E-003 Streptococcus parasanguinis species Low
2.91E-003 Candidatus Tammella genus High
2.98E-003 Ethanoligenens genus High
3.04E-003 Nostoc genus Low
1.49E-009 Lactobacillales order High
3.09E-003 Alcaligenaceae family Low
3.10E-003 Staphylococcus aureus species Low
3.19E-003 Hyphomicrobium aestuarii species High
3.24E-003 Streptococcus troglodytae species High
2.02E-003 Cerasicoccaceae family High
2.47E-003 Desulfosporosinus genus High
3.31E-003 Dechloromonas hortensis species High
3.31E-003 Hydrogenophilales order High
3.31E-003 Hydrogenophilia class High
3.31E-003 Hydrogenophilaceae family High
3.33E-003 Hallella multisaccharivorax species High
3.35E-003 Schaalia naturae species High
8.28E-004 Rivulariaceae family High
2.02E-003 Cerasicoccus genus High
3.38E-003 Candidatus Tammella caduceiae species High
9.75E-004 Moorella group norank Low
3.44E-003 Spirochaetota phylum High
3.04E-003 Bacteroides zoogleoformans species High
4.78E-007 Bacteroides stercorirosoris species Low
3.53E-003 Neisseria cinerea species Low
3.11E-003 Streptococcus oralis species High
3.54E-003 Streptococcus oralis subsp. tigurinus subspecies High
3.54E-003 Amedibacillus dolichus species High
3.56E-003 Streptococcus oralis subsp. tigurinus subspecies Low
3.57E-003 Bifidobacterium catenulatum species Low
2.91E-003 Rhodanobacteraceae family High
3.28E-003 Lelliottia genus High
3.28E-003 Lelliottia amnigena species High
3.71E-003 Schaalia naturae species Low
3.72E-003 Odoribacter laneus species High
3.79E-003 Streptococcus genus High
3.86E-003 Nostoc genus High
3.20E-003 Bifidobacterium indicum species Low
2.38E-003 Bacteroides salyersiae species High
2.05E-003 Bifidobacterium catenulatum PV20-2 strain Low
1.16E-007 Pedobacter genus Low
4.05E-003 Puniceicoccaceae family High
3.76E-003 Bacteroides clarus species High
0.00E+000 Holdemania genus Low
3.70E-003 Enterobacter cloacae complex species group High
4.22E-003 Amedibacillus genus High
1.48E-003 Thermosediminibacterales order High
4.26E-003 Desulfonatronovibrionaceae family High
3.83E-003 Ruminiclostridium cellulolyticum species High
1.70E-003 Bifidobacterium bifidum species High
3.93E-003 Finegoldia magna species High
9.50E-005 Pedobacter daejeonensis species High
4.10E-003 Enterobacter hormaechei species High
4.05E-003 Luteibacter genus High
4.54E-003 Gluconobacter genus High
4.04E-003 Luteibacter anthropi species High
3.95E-007 Phocaeicola genus Low
4.59E-003 Devosia genus Low
4.59E-003 Devosiaceae family Low
3.65E-009 Bacilli class High
4.52E-003 Veillonella dispar species High
4.71E-003 Thiothrix ramosa species High
4.75E-003 Bifidobacterium thermacidophilum species Low
4.76E-003 Pasteurellales order High
4.76E-003 Pasteurellaceae family High
4.82E-003 Segatella buccae species High
4.83E-003 Bifidobacterium thermophilum species High
5.38E-007 Phenylobacterium genus High
3.22E-003 Tepidanaerobacter syntrophicus species High
3.22E-003 Tepidanaerobacteraceae family High
3.22E-003 Tepidanaerobacter genus High
4.91E-003 Spirochaetales order High
1.89E-003 Acinetobacter antiviralis species High
4.96E-003 Veillonella atypica species High
4.98E-003 Bifidobacterium scardovii species Low
5.05E-003 Oligella ureolytica species High
5.19E-003 16SrIX (Pigeon pea witches'-broom group) species group High
5.19E-003 Candidatus Phytoplasma phoenicium species High
5.63E-003 Niabella aurantiaca species High
5.70E-003 Rickettsieae tribe High
5.70E-003 Rickettsia genus High
5.70E-003 Rickettsiaceae family High
5.79E-003 Anaeromusa genus Low
5.79E-003 Anaeromusa acidaminophila species Low
6.15E-003 Hymenobacter xinjiangensis species High
1.01E-003 Legionella shakespearei species High
3.99E-003 Odoribacter denticanis species High
3.12E-003 Ammonifex genus High
2.86E-003 Ammonifex thiophilus species High
6.34E-003 Streptomyces genus Low
6.36E-003 Micromonosporaceae family Low
6.36E-003 Micromonosporales order Low
6.52E-003 Piscirickettsiaceae family High
4.08E-003 Mycoplasma timone species Low
1.71E-003 Citrobacter genus Low
7.02E-003 Filifactor alocis species Low
7.21E-003 Lactiplantibacillus genus Low
1.16E-003 Desulfacinum genus High
1.16E-003 Desulfacinum subterraneum species High
7.63E-003 Calothrix parietina species Low
7.71E-003 Hoylesella shahii species Low
5.24E-003 Edaphobacter genus Low
5.24E-003 Edaphobacter modestus species Low

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