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Symptom Association Studies

The following is based on uploaded samples annotated with symptoms. Different lab pipelines give different bacteria on the same sample.

While different bacteria are reported, when we look at the compounds we have a convergence across labs. This suggestions that the symptom is due to an imbalance of chemicals circulating.

The samples and symptoms are available for download for those who wish to check these tables.

Description of this Advanced Probiotic Suggestions post and 📹 video

Symptom:
Probability
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  • < 0.01
  • < 0.001
  • < 0.0001
    		•

    Bacteria Associations

    LabBacteriaRankDirection Prob <
    Thryve [Clostridium] scindens species High 0.001
    Thryve [Eubacterium] cellulosolvens species High 0.0001
    BiomeSight 16SrX (Apple proliferation group) species group Low 0.001
    BiomeSight Acetivibrio genus Low 0.0001
    Thryve Acidaminobacter genus High 0.001
    Thryve Acidaminobacter hydrogenoformans species High 0.001
    BiomeSight Acidaminococcaceae family Low 0.0001
    BiomeSight Acidaminococcales order Low 0.0001
    Thryve Acidimicrobiaceae family High 0.001
    Thryve Acidimicrobiales order High 0.001
    Thryve Acidimicrobiia class High 0.001
    Thryve Acidobacteriota phylum Low 0.0001
    Thryve Actinomycetes class Low 0.0001
    BiomeSight Actinomycetes class Low 0.0001
    Thryve Agathobacter genus Low 0.0001
    Thryve Agathobaculum genus Low 0.0001
    BiomeSight Akkermansiaceae family Low 0.0001
    BiomeSight Amedibacillus genus Low 0.0001
    Thryve Anaerobutyricum genus Low 0.0001
    Thryve Anaerococcus genus High 0.0001
    Thryve Anaerostipes genus High 0.0001
    Thryve Anaerotignum genus Low 0.0001
    BiomeSight Aphanizomenonaceae family Low 0.001
    BiomeSight Bacillales order Low 0.0001
    Thryve Bacillales incertae sedis no rank Low 0.0001
    Thryve Bacillota sensu stricto incertae sedis no rank Low 0.001
    Thryve Bacteroidaceae family High 0.0001
    Thryve Bacteroides genus High 0.0001
    Thryve Bacteroides caccae species High 0.0001
    Thryve Bacteroides gallinarum species High 0.0001
    Thryve Bacteroides propionicifaciens species High 0.0001
    Thryve Bacteroides rodentium species High 0.0001
    Thryve Bacteroides uniformis species High 0.0001
    Thryve Bacteroidota phylum Low 0.0001
    Thryve Bacteroidota/Chlorobiota group clade Low 0.0001
    BiomeSight Bacteroidota/Chlorobiota group clade Low 0.0001
    Thryve Barnesiellaceae family Low 0.0001
    Thryve Blautia hansenii species High 0.0001
    Thryve Blautia hydrogenotrophica species High 0.001
    Thryve Blautia schinkii species High 0.0001
    BiomeSight Caldicellulosiruptoraceae family Low 0.0001
    BiomeSight Caldicellulosiruptorales order Low 0.0001
    Thryve Cellulosilyticaceae family Low 0.0001
    Thryve Chitinophagaceae family High 0.0001
    Thryve Chitinophagales order High 0.0001
    Thryve Chitinophagia class High 0.0001
    BiomeSight Chlorobiales order Low 0.0001
    Thryve Clostridium akagii species High 0.0001
    BiomeSight Coprobacillaceae family Low 0.0001
    Thryve Coprobacillaceae family Low 0.0001
    BiomeSight Coriobacteriia class Low 0.0001
    BiomeSight Cyanobacteriota/Melainabacteria group clade Low 0.0001
    Thryve Cyanobacteriota/Melainabacteria group clade Low 0.0001
    Thryve Cyanophyceae class Low 0.0001
    BiomeSight Cyanophyceae class Low 0.0001
    BiomeSight Cytophagales order Low 0.0001
    BiomeSight Cytophagia class Low 0.0001
    BiomeSight delta/epsilon subdivisions clade Low 0.0001
    Thryve delta/epsilon subdivisions clade Low 0.0001
    Thryve Desulfobacteria class Low 0.001
    Thryve Desulfofalx genus Low 0.001
    Thryve Desulfohalotomaculum genus Low 0.001
    Thryve Desulfotomaculaceae family Low 0.0001
    BiomeSight Desulfotomaculaceae family Low 0.001
    BiomeSight Desulfovibrionia class Low 0.0001
    Thryve Desulfovibrionia class Low 0.0001
    uBiome Desulfovibrionia class Low 0.001
    Thryve Desulfurisporaceae family Low 0.001
    BiomeSight Desulfurisporaceae family Low 0.001
    BiomeSight Dethiosulfovibrionaceae family Low 0.001
    Thryve Dialister invisus species High 0.0001
    Thryve Dorea formicigenerans species High 0.0001
    BiomeSight Dysgonomonadaceae family Low 0.0001
    Thryve Dysgonomonadaceae family Low 0.0001
    BiomeSight Eggerthellaceae family Low 0.0001
    BiomeSight Eggerthellales order Low 0.0001
    Thryve Eggerthia genus High 0.001
    Thryve Eggerthia catenaformis species High 0.001
    Thryve Enterocloster genus Low 0.0001
    Thryve Enterocloster aldenensis species High 0.0001
    BiomeSight Epsilonproteobacteria class Low 0.001
    Thryve Epsilonproteobacteria class Low 0.001
    BiomeSight Eubacteriales Family XIII. Incertae Sedis family Low 0.0001
    BiomeSight Eubacteriales incertae sedis no rank Low 0.0001
    Thryve Eubacteriales incertae sedis no rank Low 0.0001
    Thryve Faecalicatena genus Low 0.0001
    Thryve Faecalicatena orotica species High 0.001
    Thryve Falseniella genus Low 0.001
    Thryve FCB group clade Low 0.0001
    BiomeSight FCB group clade Low 0.0001
    Thryve Flavonifractor genus High 0.0001
    Thryve Flavonifractor plautii species High 0.0001
    BiomeSight Fusobacteriales order Low 0.001
    Thryve Gordonibacter urolithinfaciens species High 0.0001
    BiomeSight Hathewaya genus Low 0.0001
    Thryve Hathewaya proteolytica species High 0.001
    Thryve Herbinix genus High 0.0001
    Thryve Herbinix hemicellulosilytica species High 0.0001
    BiomeSight Holdemanella genus Low 0.001
    BiomeSight Hoylesella genus Low 0.0001
    Thryve Hoylesella genus Low 0.0001
    Thryve Hungateiclostridiaceae family Low 0.001
    BiomeSight Hydrogenophilia class Low 0.001
    BiomeSight Hymenobacteraceae family Low 0.001
    Thryve Hyphomonadales order Low 0.001
    BiomeSight Insolitispirillum genus Low 0.001
    Thryve Lachnospira eligens species High 0.0001
    Thryve Lactococcus genus High 0.001
    Thryve Lactonifactor genus High 0.001
    Thryve Leyella genus Low 0.001
    Thryve Marinilabiliales order Low 0.001
    Thryve Mediterraneibacter genus Low 0.0001
    BiomeSight Mediterraneibacter genus Low 0.0001
    BiomeSight Metamycoplasmataceae family Low 0.0001
    Thryve Metamycoplasmataceae family Low 0.001
    BiomeSight Micrococcales order Low 0.001
    BiomeSight Moorella group norank Low 0.001
    BiomeSight Moorellaceae family Low 0.001
    BiomeSight Moorellales order Low 0.001
    BiomeSight Mycobacteriales order Low 0.001
    BiomeSight Mycoplasmoidales order Low 0.0001
    Thryve Mycoplasmoidales order Low 0.001
    BiomeSight Mycoplasmopsis genus Low 0.0001
    BiomeSight Negativicutes class Low 0.0001
    BiomeSight Nevskiales order Low 0.0001
    Thryve Niabella genus High 0.0001
    Thryve Niabella aurantiaca species High 0.0001
    Thryve Oleidesulfovibrio genus Low 0.001
    Thryve Oribacterium genus High 0.001
    Thryve Oribacterium sinus species High 0.001
    Thryve Oscillatoriophycideae subclass Low 0.001
    BiomeSight Oscillospiraceae family Low 0.0001
    Thryve Oscillospiraceae incertae sedis no rank Low 0.0001
    Thryve Paracholeplasma genus Low 0.001
    Thryve Peptoniphilaceae family High 0.0001
    BiomeSight Peptoniphilaceae family Low 0.0001
    BiomeSight Peptostreptococcaceae incertae sedis no rank Low 0.001
    Thryve Peptostreptococcaceae incertae sedis no rank Low 0.0001
    BiomeSight Phocaeicola genus Low 0.0001
    uBiome Phocaeicola genus Low 0.001
    BiomeSight Proteinivoraceae family Low 0.001
    BiomeSight Pseudoclostridium genus Low 0.0001
    uBiome Pseudoflavonifractor capillosus species High 0.001
    Thryve Pseudoramibacter genus High 0.001
    Thryve Pseudoramibacter alactolyticus species High 0.001
    Thryve Pseudoscillatoria genus High 0.0001
    Thryve Pseudoscillatoria coralii species High 0.0001
    BiomeSight PVC group clade Low 0.0001
    Thryve PVC group clade Low 0.0001
    BiomeSight Rhodanobacteraceae family Low 0.001
    BiomeSight Rhodothermales order Low 0.0001
    Thryve Rhodothermales order High 0.0001
    Thryve Rhodothermia class High 0.0001
    BiomeSight Rhodothermia class Low 0.0001
    BiomeSight Rhodothermota phylum Low 0.0001
    Thryve Rhodothermota phylum High 0.0001
    BiomeSight Rickettsieae tribe Low 0.001
    Thryve Rothia genus High 0.0001
    Thryve Rothia mucilaginosa species High 0.0001
    BiomeSight Ruminiclostridium genus Low 0.0001
    BiomeSight Ruminiclostridium cellobioparum species Low 0.001
    BiomeSight Schaalia genus Low 0.001
    Thryve Schaalia genus Low 0.001
    Thryve Segatella genus Low 0.0001
    BiomeSight Segatella genus Low 0.0001
    BiomeSight Selenomonadaceae family Low 0.0001
    BiomeSight Selenomonadales order Low 0.0001
    BiomeSight Spirosomataceae family Low 0.0001
    Thryve Spirosomataceae family Low 0.001
    BiomeSight Sporomusaceae family Low 0.001
    BiomeSight Streptosporangiales order Low 0.001
    BiomeSight Sutterellaceae family Low 0.0001
    BiomeSight Tannerellaceae family Low 0.0001
    Thryve Tannerellaceae family Low 0.0001
    Thryve Terrabacteria group clade Low 0.0001
    BiomeSight Terrabacteria group clade Low 0.0001
    BiomeSight Thermoclostridium genus Low 0.001
    uBiome Thermodesulfobacteriota phylum Low 0.001
    Thryve Thermohalobacteraceae family Low 0.0001
    Thryve Thomasclavelia genus Low 0.0001
    uBiome Thomasclavelia genus Low 0.001
    Thryve Tissierellales order High 0.0001
    BiomeSight Tissierellales order Low 0.0001
    BiomeSight Tissierellia class Low 0.0001
    Thryve Tissierellia class High 0.0001
    Thryve Tissierellia incertae sedis no rank Low 0.001
    BiomeSight Tissierellia incertae sedis no rank Low 0.0001
    BiomeSight Turicibacteraceae family Low 0.001
    Thryve Turicibacteraceae family Low 0.001
    uBiome unclassified Bacteroides no rank Low 0.001
    BiomeSight unclassified Bacteroidetes Order II. order Low 0.001
    Thryve unclassified Clostridiales family Low 0.001
    uBiome unclassified Faecalibacterium no rank Low 0.001
    Thryve unclassified Lachnospiraceae no rank Low 0.0001
    uBiome unclassified Streptococcus no rank Low 0.001
    Thryve Veillonellaceae family High 0.001
    BiomeSight Veillonellales order Low 0.0001
    BiomeSight Yersiniaceae family Low 0.001

    Enzyme Associations

    Enzymes are produced by bacteria, including bacteria in probiotics. Where enzymes are too low, there may be probiotics that will supply the enzymes.

    LabEC KeyNameDirection Probability
    uBiome 1.1.1.100 3-oxoacyl-[acyl-carrier-protein] reductase High 0.001
    Thryve 1.1.1.105 all-trans-retinol dehydrogenase (NAD+) Low 0.001
    uBiome 1.1.1.133 dTDP-4-dehydrorhamnose reductase High 0.001
    BiomeSight 1.1.1.135 GDP-6-deoxy-D-talose 4-dehydrogenase Low 0.0001
    Thryve 1.1.1.202 1,3-propanediol dehydrogenase Low 0.0001
    uBiome 1.1.1.205 IMP dehydrogenase High 0.001
    BiomeSight 1.1.1.219 dihydroflavonol 4-reductase Low 0.001
    Thryve 1.1.1.251 galactitol-1-phosphate 5-dehydrogenase High 0.0001
    Thryve 1.1.1.264 L-idonate 5-dehydrogenase High 0.001
    uBiome 1.1.1.267 1-deoxy-D-xylulose-5-phosphate reductoisomerase High 0.001
    BiomeSight 1.1.1.284 S-(hydroxymethyl)glutathione dehydrogenase Low 0.0001
    Thryve 1.1.1.29 glycerate dehydrogenase High 0.0001
    Thryve 1.1.1.292 1,5-anhydro-D-fructose reductase (1,5-anhydro-D-mannitol-forming) High 0.0001
    uBiome 1.1.1.3 homoserine dehydrogenase High 0.001
    BiomeSight 1.1.1.306 S-(hydroxymethyl)mycothiol dehydrogenase Low 0.001
    uBiome 1.1.1.343 phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) High 0.001
    uBiome 1.1.1.363 glucose-6-phosphate dehydrogenase [NAD(P)+] High 0.001
    BiomeSight 1.1.1.374 UDP-N-acetylglucosamine 3-dehydrogenase Low 0.0001
    BiomeSight 1.1.1.385 dihydroanticapsin dehydrogenase Low 0.0001
    uBiome 1.1.1.44 phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) High 0.001
    uBiome 1.1.1.49 glucose-6-phosphate dehydrogenase (NADP+) High 0.001
    Thryve 1.1.1.53 3α(or 20β)-hydroxysteroid dehydrogenase Low 0.0001
    BiomeSight 1.1.1.57 fructuronate reductase Low 0.001
    BiomeSight 1.1.1.90 aryl-alcohol dehydrogenase Low 0.0001
    Thryve 1.1.5.12 D-lactate dehydrogenase (quinone) High 0.001
    Thryve 1.1.5.13 (S)-2-hydroxyglutarate dehydrogenase High 0.0001
    BiomeSight 1.1.5.5 alcohol dehydrogenase (quinone) Low 0.001
    BiomeSight 1.1.98.3 decaprenylphospho-β-D-ribofuranose 2-dehydrogenase High 0.001
    uBiome 1.1.98.6 ribonucleoside-triphosphate reductase (formate) High 0.001
    Thryve 1.11.1.21 catalase-peroxidase High 0.001
    uBiome 1.11.1.24 thioredoxin-dependent peroxiredoxin High 0.001
    uBiome 1.11.1.26 NADH-dependent peroxiredoxin High 0.001
    Thryve 1.11.1.5 cytochrome-c peroxidase High 0.001
    BiomeSight 1.12.1.2 hydrogen dehydrogenase Low 0.0001
    Thryve 1.12.1.4 hydrogenase (NAD+, ferredoxin) High 0.001
    Thryve 1.12.2.1 cytochrome-c3 hydrogenase Low 0.001
    BiomeSight 1.12.5.1 hydrogen:quinone oxidoreductase Low 0.0001
    BiomeSight 1.13.11.1 catechol 1,2-dioxygenase Low 0.0001
    BiomeSight 1.13.11.11 tryptophan 2,3-dioxygenase Low 0.0001
    BiomeSight 1.13.11.18 persulfide dioxygenase Low 0.0001
    Thryve 1.13.11.37 hydroxyquinol 1,2-dioxygenase Low 0.0001
    Thryve 1.13.11.53 acireductone dioxygenase (Ni2+-requiring) Low 0.001
    Thryve 1.13.11.54 acireductone dioxygenase [iron(II)-requiring] Low 0.001
    Thryve 1.13.11.9 2,5-dihydroxypyridine 5,6-dioxygenase Low 0.0001
    Thryve 1.14.11.18 phytanoyl-CoA dioxygenase Low 0.0001
    BiomeSight 1.14.11.2 procollagen-proline 4-dioxygenase Low 0.0001
    BiomeSight 1.14.12.10 benzoate 1,2-dioxygenase Low 0.0001
    BiomeSight 1.14.13.113 FAD-dependent urate hydroxylase Low 0.0001
    Thryve 1.14.13.127 3-(3-hydroxyphenyl)propanoate hydroxylase High 0.001
    Thryve 1.14.13.148 trimethylamine monooxygenase Low 0.001
    Thryve 1.14.13.149 phenylacetyl-CoA 1,2-epoxidase High 0.001
    BiomeSight 1.14.13.195 L-ornithine N5-monooxygenase (NADPH) Low 0.0001
    BiomeSight 1.14.13.196 L-ornithine N5-monooxygenase [NAD(P)H] Low 0.0001
    Thryve 1.14.13.2 4-hydroxybenzoate 3-monooxygenase Low 0.001
    Thryve 1.14.13.20 2,4-dichlorophenol 6-monooxygenase Low 0.0001
    Thryve 1.14.13.239 carnitine monooxygenase High 0.001
    BiomeSight 1.14.13.81 magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase Low 0.0001
    BiomeSight 1.14.14.47 nitric-oxide synthase (flavodoxin) Low 0.0001
    BiomeSight 1.14.15.7 choline monooxygenase Low 0.0001
    Thryve 1.14.18.1 tyrosinase Low 0.0001
    Thryve 1.14.18.6 4-hydroxysphinganine ceramide fatty acyl 2-hydroxylase Low 0.001
    Thryve 1.14.19.20 Δ7-sterol 5(6)-desaturase Low 0.0001
    BiomeSight 1.14.19.23 acyl-lipid (n+3)-(Z)-desaturase (ferredoxin) Low 0.0001
    BiomeSight 1.14.19.45 sn-1 oleoyl-lipid 12-desaturase Low 0.0001
    Thryve 1.14.19.49 tetracycline 7-halogenase Low 0.0001
    Thryve 1.14.99.48 heme oxygenase (staphylobilin-producing) Low 0.0001
    Thryve 1.16.1.9 ferric-chelate reductase (NADPH) High 0.001
    Thryve 1.16.3.3 manganese oxidase Low 0.0001
    BiomeSight 1.17.1.11 formate dehydrogenase (NAD+, ferredoxin) Low 0.0001
    uBiome 1.17.1.8 4-hydroxy-tetrahydrodipicolinate reductase High 0.001
    BiomeSight 1.17.2.1 nicotinate dehydrogenase (cytochrome) Low 0.001
    uBiome 1.17.4.1 ribonucleoside-diphosphate reductase High 0.001
    BiomeSight 1.17.5.3 formate dehydrogenase-N Low 0.001
    uBiome 1.17.7.4 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase High 0.001
    uBiome 1.17.99.6 epoxyqueuosine reductase High 0.001
    Thryve 1.17.99.9 heme a synthase High 0.001
    Thryve 1.18.1.1 rubredoxin—NAD+ reductase High 0.0001
    uBiome 1.2.1.11 aspartate-semialdehyde dehydrogenase High 0.001
    uBiome 1.2.1.12 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) High 0.001
    Thryve 1.2.1.19 aminobutyraldehyde dehydrogenase High 0.001
    Thryve 1.2.1.24 succinate-semialdehyde dehydrogenase (NAD+) High 0.001
    Thryve 1.2.1.39 phenylacetaldehyde dehydrogenase High 0.001
    Thryve 1.2.1.84 alcohol-forming fatty acyl-CoA reductase Low 0.0001
    Thryve 1.2.1.91 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase High 0.001
    Thryve 1.3.1.101 2,3-bis-O-geranylgeranyl-sn-glycerol 1-phosphate reductase [NAD(P)H] Low 0.0001
    BiomeSight 1.3.1.111 geranylgeranyl-bacteriochlorophyllide a reductase Low 0.0001
    Thryve 1.3.1.114 3-dehydro-bile acid Δ4,6-reductase High 0.001
    Thryve 1.3.1.115 3-oxocholoyl-CoA 4-desaturase High 0.001
    Thryve 1.3.1.116 7β-hydroxy-3-oxochol-24-oyl-CoA 4-desaturase High 0.001
    Thryve 1.3.1.14 dihydroorotate dehydrogenase (NAD+) High 0.001
    Thryve 1.3.1.32 maleylacetate reductase Low 0.0001
    Thryve 1.3.1.43 arogenate dehydrogenase Low 0.0001
    BiomeSight 1.3.1.83 geranylgeranyl diphosphate reductase Low 0.0001
    uBiome 1.3.1.98 UDP-N-acetylmuramate dehydrogenase High 0.001
    BiomeSight 1.3.3.3 coproporphyrinogen oxidase Low 0.001
    Thryve 1.3.5.1 succinate dehydrogenase High 0.0001
    Thryve 1.3.5.4 fumarate reductase (quinol) High 0.0001
    uBiome 1.3.5.4 fumarate reductase (quinol) High 0.001
    BiomeSight 1.3.5.5 15-cis-phytoene desaturase Low 0.0001
    Thryve 1.3.7.11 2,3-bis-O-geranylgeranyl-sn-glycero-phospholipid reductase Low 0.0001
    BiomeSight 1.3.7.7 ferredoxin:protochlorophyllide reductase (ATP-dependent) Low 0.0001
    BiomeSight 1.3.8.5 short-chain 2-methylacyl-CoA dehydrogenase High 0.0001
    Thryve 1.3.98.3 coproporphyrinogen dehydrogenase High 0.001
    BiomeSight 1.3.99.38 menaquinone-9 β-reductase Low 0.0001
    Thryve 1.3.99.4 3-oxosteroid 1-dehydrogenase Low 0.0001
    Thryve 1.4.3.10 putrescine oxidase Low 0.0001
    Thryve 1.4.3.4 monoamine oxidase High 0.001
    uBiome 1.5.1.3 dihydrofolate reductase High 0.001
    Thryve 1.5.1.41 riboflavin reductase [NAD(P)H] High 0.001
    uBiome 1.5.1.5 methylenetetrahydrofolate dehydrogenase (NADP+) High 0.001
    Thryve 1.5.5.1 electron-transferring-flavoprotein dehydrogenase Low 0.001
    BiomeSight 1.6.1.2 NAD(P)+ transhydrogenase (Re/Si-specific) Low 0.001
    Thryve 1.7.2.2 nitrite reductase (cytochrome; ammonia-forming) High 0.001
    BiomeSight 1.7.2.4 nitrous-oxide reductase Low 0.0001
    BiomeSight 1.7.5.1 nitrate reductase (quinone) Low 0.001
    Thryve 1.8.1.18 NAD(P)H sulfur oxidoreductase (CoA-dependent) Low 0.0001
    uBiome 1.8.1.9 thioredoxin-disulfide reductase High 0.001
    Thryve 1.8.7.1 assimilatory sulfite reductase (ferredoxin) High 0.001
    BiomeSight 1.8.7.2 ferredoxin:thioredoxin reductase Low 0.0001
    uBiome 1.97.1.4 [formate-C-acetyltransferase]-activating enzyme High 0.001
    BiomeSight 2.1.1.11 magnesium protoporphyrin IX methyltransferase Low 0.0001
    Thryve 2.1.1.156 glycine/sarcosine N-methyltransferase High 0.0001
    uBiome 2.1.1.170 16S rRNA (guanine527-N7)-methyltransferase High 0.001
    uBiome 2.1.1.171 16S rRNA (guanine966-N2)-methyltransferase High 0.001
    uBiome 2.1.1.177 23S rRNA (pseudouridine1915-N3)-methyltransferase High 0.0001
    uBiome 2.1.1.182 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase High 0.001
    uBiome 2.1.1.185 23S rRNA (guanosine2251-2′-O)-methyltransferase High 0.001
    uBiome 2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase High 0.001
    uBiome 2.1.1.192 23S rRNA (adenine2503-C2)-methyltransferase High 0.001
    uBiome 2.1.1.193 16S rRNA (uracil1498-N3)-methyltransferase High 0.001
    uBiome 2.1.1.198 16S rRNA (cytidine1402-2′-O)-methyltransferase High 0.001
    uBiome 2.1.1.199 16S rRNA (cytosine1402-N4)-methyltransferase High 0.001
    Thryve 2.1.1.209 23S rRNA (guanine2535-N1)-methyltransferase Low 0.0001
    Thryve 2.1.1.213 tRNA (guanine10-N2)-dimethyltransferase Low 0.0001
    uBiome 2.1.1.228 tRNA (guanine37-N1)-methyltransferase High 0.001
    BiomeSight 2.1.1.294 3-O-phospho-polymannosyl GlcNAc-diphospho-ditrans,octacis-undecaprenol 3-phospho-methyltransferase Low 0.0001
    uBiome 2.1.1.297 peptide chain release factor N5-glutamine methyltransferase High 0.001
    uBiome 2.1.1.33 tRNA (guanine46-N7)-methyltransferase High 0.001
    uBiome 2.1.1.45 thymidylate synthase High 0.001
    uBiome 2.1.1.63 methylated-DNA—[protein]-cysteine S-methyltransferase High 0.001
    Thryve 2.1.1.67 thiopurine S-methyltransferase Low 0.001
    uBiome 2.1.1.72 site-specific DNA-methyltransferase (adenine-specific) High 0.001
    Thryve 2.1.1.77 protein-L-isoaspartate(D-aspartate) O-methyltransferase High 0.001
    uBiome 2.1.2.1 glycine hydroxymethyltransferase High 0.0001
    uBiome 2.1.2.2 phosphoribosylglycinamide formyltransferase 1 High 0.001
    uBiome 2.1.2.3 phosphoribosylaminoimidazolecarboxamide formyltransferase High 0.001
    uBiome 2.1.2.9 methionyl-tRNA formyltransferase High 0.001
    Thryve 2.1.3.1 methylmalonyl-CoA carboxytransferase Low 0.0001
    Thryve 2.1.3.15 acetyl-CoA carboxytransferase High 0.001
    uBiome 2.1.3.2 aspartate carbamoyltransferase High 0.001
    uBiome 2.2.1.1 transketolase High 0.001
    Thryve 2.2.1.10 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase High 0.001
    Thryve 2.2.1.14 6-deoxy-6-sulfo-D-fructose transaldolase Low 0.0001
    BiomeSight 2.2.1.5 2-hydroxy-3-oxoadipate synthase Low 0.0001
    uBiome 2.2.1.7 1-deoxy-D-xylulose-5-phosphate synthase High 0.001
    BiomeSight 2.3.1.184 acyl-homoserine-lactone synthase Low 0.001
    BiomeSight 2.3.1.189 mycothiol synthase Low 0.001
    BiomeSight 2.3.1.20 diacylglycerol O-acyltransferase Low 0.0001
    Thryve 2.3.1.204 octanoyl-[GcvH]:protein N-octanoyltransferase High 0.001
    Thryve 2.3.1.207 β-ketodecanoyl-[acyl-carrier-protein] synthase Low 0.0001
    Thryve 2.3.1.210 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase High 0.001
    Thryve 2.3.1.222 phosphate propanoyltransferase High 0.001
    BiomeSight 2.3.1.222 phosphate propanoyltransferase Low 0.0001
    uBiome 2.3.1.234 N6-L-threonylcarbamoyladenine synthase High 0.001
    Thryve 2.3.1.242 Kdo2-lipid IVA palmitoleoyltransferase High 0.0001
    uBiome 2.3.1.266 [ribosomal protein bS18]-alanine N-acetyltransferase High 0.001
    Thryve 2.3.1.270 lyso-ornithine lipid O-acyltransferase Low 0.0001
    uBiome 2.3.1.39 [acyl-carrier-protein] S-malonyltransferase High 0.001
    Thryve 2.3.1.48 histone acetyltransferase Low 0.0001
    uBiome 2.3.1.51 1-acylglycerol-3-phosphate O-acyltransferase High 0.001
    Thryve 2.3.1.60 gentamicin 3-N-acetyltransferase Low 0.0001
    Thryve 2.3.2.3 lysyltransferase High 0.001
    BiomeSight 2.4.1.117 dolichyl-phosphate β-glucosyltransferase Low 0.001
    BiomeSight 2.4.1.122 N-acetylgalactosaminide β-1,3-galactosyltransferase Low 0.0001
    BiomeSight 2.4.1.14 sucrose-phosphate synthase Low 0.0001
    Thryve 2.4.1.14 sucrose-phosphate synthase Low 0.001
    Thryve 2.4.1.152 4-galactosyl-N-acetylglucosaminide 3-α-L-fucosyltransferase Low 0.001
    Thryve 2.4.1.21 starch synthase (glycosyl-transferring) High 0.001
    uBiome 2.4.1.227 undecaprenyldiphospho-muramoylpentapeptide β-N-acetylglucosaminyltransferase High 0.001
    BiomeSight 2.4.1.247 β-D-galactosyl-(1→4)-L-rhamnose phosphorylase Low 0.001
    BiomeSight 2.4.1.276 zeaxanthin glucosyltransferase Low 0.0001
    Thryve 2.4.1.279 nigerose phosphorylase High 0.001
    Thryve 2.4.1.282 3-O-α-D-glucosyl-L-rhamnose phosphorylase Low 0.001
    Thryve 2.4.1.287 rhamnopyranosyl-N-acetylglucosaminyl-diphospho-decaprenol β-1,4/1,5-galactofuranosyltransferase Low 0.0001
    Thryve 2.4.1.292 GalNAc-α-(1→4)-GalNAc-α-(1→3)-diNAcBac-PP-undecaprenol α-1,4-N-acetyl-D-galactosaminyltransferase High 0.001
    BiomeSight 2.4.1.305 UDP-Glc:α-D-GlcNAc-glucosaminyl-diphosphoundecaprenol β-1,3-glucosyltransferase Low 0.0001
    BiomeSight 2.4.1.306 UDP-GalNAc:α-D-GalNAc-diphosphoundecaprenol α-1,3-N-acetylgalactosaminyltransferase Low 0.0001
    BiomeSight 2.4.1.308 GDP-Fuc:β-D-Gal-1,3-α-D-GalNAc-1,3-α-GalNAc-diphosphoundecaprenol α-1,2-fucosyltransferase Low 0.0001
    BiomeSight 2.4.1.33 mannuronan synthase Low 0.0001
    Thryve 2.4.1.333 1,2-β-oligoglucan phosphorylase High 0.001
    BiomeSight 2.4.1.335 dolichyl N-acetyl-α-D-glucosaminyl phosphate 3-β-D-2,3-diacetamido-2,3-dideoxy-β-D-glucuronosyltransferase Low 0.0001
    BiomeSight 2.4.1.342 α-maltose-1-phosphate synthase Low 0.001
    Thryve 2.4.1.355 poly(ribitol-phosphate) β-N-acetylglucosaminyltransferase Low 0.0001
    BiomeSight 2.4.1.382 CDP-abequose:α-L-Rha2OAc-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-α-D-Gal-PP-Und α-1,3-abequosyltransferase Low 0.0001
    Thryve 2.4.1.5 dextransucrase High 0.0001
    Thryve 2.4.1.52 poly(glycerol-phosphate) α-glucosyltransferase Low 0.0001
    Thryve 2.4.1.65 3-galactosyl-N-acetylglucosaminide 4-α-L-fucosyltransferase Low 0.001
    Thryve 2.4.1.82 galactinol—sucrose galactosyltransferase Low 0.0001
    BiomeSight 2.4.1.82 galactinol—sucrose galactosyltransferase Low 0.001
    Thryve 2.4.2.1 purine-nucleoside phosphorylase High 0.0001
    uBiome 2.4.2.10 orotate phosphoribosyltransferase High 0.001
    BiomeSight 2.4.2.12 nicotinamide phosphoribosyltransferase Low 0.001
    Thryve 2.4.2.14 amidophosphoribosyltransferase High 0.0001
    uBiome 2.4.2.14 amidophosphoribosyltransferase High 0.001
    uBiome 2.4.2.18 anthranilate phosphoribosyltransferase High 0.001
    uBiome 2.4.2.29 tRNA-guanosine34 preQ1 transglycosylase High 0.001
    Thryve 2.4.2.30 NAD+ ADP-ribosyltransferase Low 0.0001
    BiomeSight 2.4.2.30 NAD+ ADP-ribosyltransferase Low 0.001
    Thryve 2.4.2.44 S-methyl-5′-thioinosine phosphorylase Low 0.001
    Thryve 2.4.2.47 arabinofuranan 3-O-arabinosyltransferase Low 0.001
    BiomeSight 2.4.2.6 nucleoside deoxyribosyltransferase Low 0.0001
    uBiome 2.4.2.8 hypoxanthine phosphoribosyltransferase High 0.001
    uBiome 2.4.2.9 uracil phosphoribosyltransferase High 0.001
    BiomeSight 2.4.99.19 undecaprenyl-diphosphooligosaccharide—protein glycotransferase Low 0.001
    uBiome 2.5.1.1 dimethylallyltranstransferase High 0.001
    uBiome 2.5.1.10 (2E,6E)-farnesyl diphosphate synthase High 0.001
    BiomeSight 2.5.1.133 bacteriochlorophyll a synthase Low 0.0001
    BiomeSight 2.5.1.147 5-amino-6-(D-ribitylamino)uracil—L-tyrosine 4-hydroxyphenyl transferase Low 0.0001
    Thryve 2.5.1.149 lycopene elongase/hydratase (flavuxanthin-forming) Low 0.0001
    uBiome 2.5.1.15 dihydropteroate synthase High 0.001
    Thryve 2.5.1.18 glutathione transferase High 0.001
    uBiome 2.5.1.19 3-phosphoshikimate 1-carboxyvinyltransferase High 0.001
    BiomeSight 2.5.1.25 tRNA-uridine aminocarboxypropyltransferase Low 0.001
    uBiome 2.5.1.29 geranylgeranyl diphosphate synthase High 0.001
    BiomeSight 2.5.1.30 heptaprenyl diphosphate synthase Low 0.001
    uBiome 2.5.1.31 ditrans,polycis-undecaprenyl-diphosphate synthase [(2E,6E)-farnesyl-diphosphate specific] High 0.001
    Thryve 2.5.1.56 N-acetylneuraminate synthase High 0.001
    uBiome 2.5.1.6 methionine adenosyltransferase High 0.001
    BiomeSight 2.5.1.62 chlorophyll synthase Low 0.0001
    BiomeSight 2.5.1.68 (2Z,6E)-farnesyl diphosphate synthase Low 0.0001
    uBiome 2.5.1.7 UDP-N-acetylglucosamine 1-carboxyvinyltransferase High 0.001
    uBiome 2.5.1.74 1,4-dihydroxy-2-naphthoate polyprenyltransferase High 0.001
    uBiome 2.5.1.75 tRNA dimethylallyltransferase High 0.001
    BiomeSight 2.5.1.76 cysteate synthase Low 0.001
    BiomeSight 2.5.1.84 all-trans-nonaprenyl diphosphate synthase [geranyl-diphosphate specific] Low 0.0001
    BiomeSight 2.5.1.85 all-trans-nonaprenyl diphosphate synthase [geranylgeranyl-diphosphate specific] Low 0.0001
    uBiome 2.6.1.11 acetylornithine transaminase High 0.001
    BiomeSight 2.6.1.111 3-aminobutanoyl-CoA transaminase Low 0.0001
    Thryve 2.6.1.112 (S)-ureidoglycine—glyoxylate transaminase Low 0.0001
    BiomeSight 2.6.1.113 putrescine—pyruvate transaminase Low 0.0001
    uBiome 2.6.1.17 succinyldiaminopimelate transaminase High 0.001
    BiomeSight 2.6.1.18 β-alanine—pyruvate transaminase Low 0.0001
    BiomeSight 2.6.1.34 UDP-N-acetylbacillosamine transaminase Low 0.001
    Thryve 2.6.1.40 (R)-3-amino-2-methylpropionate—pyruvate transaminase Low 0.0001
    uBiome 2.6.1.42 branched-chain-amino-acid transaminase High 0.001
    Thryve 2.6.1.44 alanine—glyoxylate transaminase Low 0.001
    Thryve 2.6.1.52 phosphoserine transaminase High 0.0001
    BiomeSight 2.6.1.77 taurine—pyruvate aminotransferase Low 0.001
    Thryve 2.6.1.81 succinylornithine transaminase High 0.001
    Thryve 2.6.1.83 LL-diaminopimelate aminotransferase High 0.001
    Thryve 2.6.1.92 UDP-4-amino-4,6-dideoxy-N-acetyl-β-L-altrosamine transaminase Low 0.0001
    Thryve 2.7.1.1 hexokinase High 0.001
    Thryve 2.7.1.12 gluconokinase High 0.001
    Thryve 2.7.1.146 ADP-specific phosphofructokinase High 0.001
    Thryve 2.7.1.147 ADP-specific glucose/glucosamine kinase High 0.001
    uBiome 2.7.1.148 4-(cytidine 5′-diphospho)-2-C-methyl-D-erythritol kinase High 0.001
    Thryve 2.7.1.162 N-acetylhexosamine 1-kinase Low 0.0001
    BiomeSight 2.7.1.166 3-deoxy-D-manno-octulosonic acid kinase Low 0.0001
    Thryve 2.7.1.170 anhydro-N-acetylmuramic acid kinase High 0.001
    Thryve 2.7.1.177 L-threonine kinase High 0.001
    uBiome 2.7.1.180 FAD:protein FMN transferase High 0.001
    BiomeSight 2.7.1.181 polymannosyl GlcNAc-diphospho-ditrans,octacis-undecaprenol kinase Low 0.0001
    Thryve 2.7.1.187 acarbose 7IV-phosphotransferase Low 0.0001
    Thryve 2.7.1.192 protein-Nπ-phosphohistidine—N-acetylmuramate phosphotransferase High 0.0001
    Thryve 2.7.1.194 protein-Nπ-phosphohistidine—L-ascorbate phosphotransferase High 0.001
    uBiome 2.7.1.198 protein-Nπ-phosphohistidine—D-sorbitol phosphotransferase High 0.001
    uBiome 2.7.1.201 protein-Nπ-phosphohistidine—trehalose phosphotransferase High 0.001
    Thryve 2.7.1.21 thymidine kinase High 0.0001
    Thryve 2.7.1.218 fructoselysine 6-kinase High 0.001
    Thryve 2.7.1.227 inositol phosphorylceramide synthase High 0.001
    uBiome 2.7.1.23 NAD+ kinase High 0.001
    uBiome 2.7.1.24 dephospho-CoA kinase High 0.001
    uBiome 2.7.1.26 riboflavin kinase High 0.001
    BiomeSight 2.7.1.31 glycerate 3-kinase Low 0.0001
    uBiome 2.7.1.33 pantothenate kinase High 0.001
    uBiome 2.7.1.35 pyridoxal kinase High 0.001
    Thryve 2.7.1.4 fructokinase High 0.001
    uBiome 2.7.1.40 pyruvate kinase High 0.001
    BiomeSight 2.7.1.44 galacturonokinase Low 0.001
    Thryve 2.7.1.45 2-dehydro-3-deoxygluconokinase High 0.0001
    Thryve 2.7.1.48 uridine/cytidine kinase High 0.001
    uBiome 2.7.1.49 hydroxymethylpyrimidine kinase High 0.001
    Thryve 2.7.1.53 L-xylulokinase High 0.001
    uBiome 2.7.1.71 shikimate kinase High 0.001
    Thryve 2.7.1.89 thiamine kinase High 0.001
    uBiome 2.7.11.1 non-specific serine/threonine protein kinase High 0.001
    uBiome 2.7.13.3 histidine kinase High 0.001
    Thryve 2.7.14.1 protein arginine kinase Low 0.001
    Thryve 2.7.2.1 acetate kinase High 0.001
    Thryve 2.7.2.15 propionate kinase High 0.001
    Thryve 2.7.2.3 phosphoglycerate kinase High 0.0001
    uBiome 2.7.2.3 phosphoglycerate kinase High 0.001
    uBiome 2.7.2.4 aspartate kinase High 0.001
    uBiome 2.7.2.8 acetylglutamate kinase High 0.001
    uBiome 2.7.4.22 UMP kinase High 0.001
    uBiome 2.7.4.25 (d)CMP kinase High 0.001
    uBiome 2.7.4.3 adenylate kinase High 0.001
    uBiome 2.7.4.7 phosphooxymethylpyrimidine kinase High 0.001
    uBiome 2.7.4.8 guanylate kinase High 0.001
    uBiome 2.7.6.1 ribose-phosphate diphosphokinase High 0.001
    Thryve 2.7.6.2 thiamine diphosphokinase High 0.001
    uBiome 2.7.6.3 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase High 0.001
    uBiome 2.7.6.5 GTP diphosphokinase High 0.001
    Thryve 2.7.6.5 GTP diphosphokinase High 0.001
    uBiome 2.7.7.101 DNA primase DnaG High 0.001
    uBiome 2.7.7.18 nicotinate-nucleotide adenylyltransferase High 0.001
    uBiome 2.7.7.2 FAD synthase High 0.001
    uBiome 2.7.7.3 pantetheine-phosphate adenylyltransferase High 0.001
    uBiome 2.7.7.41 phosphatidate cytidylyltransferase High 0.001
    Thryve 2.7.7.43 N-acylneuraminate cytidylyltransferase High 0.001
    Thryve 2.7.7.5 sulfate adenylyltransferase (ADP) Low 0.001
    BiomeSight 2.7.7.5 sulfate adenylyltransferase (ADP) Low 0.001
    uBiome 2.7.7.6 DNA-directed RNA polymerase High 0.001
    uBiome 2.7.7.60 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase High 0.001
    uBiome 2.7.7.7 DNA-directed DNA polymerase High 0.001
    BiomeSight 2.7.7.75 molybdopterin adenylyltransferase Low 0.001
    Thryve 2.7.7.79 tRNAHis guanylyltransferase Low 0.0001
    uBiome 2.7.7.8 polyribonucleotide nucleotidyltransferase High 0.001
    uBiome 2.7.7.87 L-threonylcarbamoyladenylate synthase High 0.001
    uBiome 2.7.8.13 phospho-N-acetylmuramoyl-pentapeptide-transferase High 0.001
    BiomeSight 2.7.8.24 phosphatidylcholine synthase Low 0.0001
    Thryve 2.7.9.1 pyruvate, phosphate dikinase High 0.0001
    uBiome 2.8.1.7 cysteine desulfurase High 0.001
    Thryve 2.8.3.16 formyl-CoA transferase High 0.001
    BiomeSight 2.8.3.6 3-oxoadipate CoA-transferase Low 0.001
    Thryve 2.8.4.2 arsenate-mycothiol transferase Low 0.001
    uBiome 2.8.4.3 tRNA-2-methylthio-N6-dimethylallyladenosine synthase High 0.001
    Thryve 3.1.1.108 iron(III)-enterobactin esterase High 0.0001
    Thryve 3.1.1.117 (4-O-methyl)-D-glucuronate—lignin esterase High 0.001
    BiomeSight 3.1.1.23 acylglycerol lipase Low 0.001
    uBiome 3.1.1.29 peptidyl-tRNA hydrolase High 0.001
    uBiome 3.1.1.31 6-phosphogluconolactonase High 0.001
    BiomeSight 3.1.1.45 carboxymethylenebutenolidase Low 0.001
    BiomeSight 3.1.1.75 poly(3-hydroxybutyrate) depolymerase Low 0.001
    uBiome 3.1.1.96 D-aminoacyl-tRNA deacylase High 0.001
    BiomeSight 3.1.11.1 exodeoxyribonuclease I Low 0.001
    uBiome 3.1.11.2 exodeoxyribonuclease III High 0.001
    uBiome 3.1.11.6 exodeoxyribonuclease VII High 0.001
    uBiome 3.1.13.1 exoribonuclease II High 0.001
    Thryve 3.1.2.23 4-hydroxybenzoyl-CoA thioesterase Low 0.001
    Thryve 3.1.2.32 2-aminobenzoylacetyl-CoA thioesterase Low 0.001
    uBiome 3.1.21.10 crossover junction endodeoxyribonuclease High 0.001
    BiomeSight 3.1.21.4 type II site-specific deoxyribonuclease High 0.001
    uBiome 3.1.26.3 ribonuclease III High 0.001
    uBiome 3.1.26.4 ribonuclease H High 0.001
    uBiome 3.1.26.5 ribonuclease P High 0.001
    uBiome 3.1.3.100 thiamine phosphate phosphatase High 0.001
    Thryve 3.1.3.22 mannitol-1-phosphatase High 0.001
    Thryve 3.1.3.23 sugar-phosphatase High 0.001
    Thryve 3.1.3.27 phosphatidylglycerophosphatase High 0.0001
    uBiome 3.1.3.3 phosphoserine phosphatase High 0.001
    BiomeSight 3.1.3.4 phosphatidate phosphatase Low 0.001
    uBiome 3.1.3.48 protein-tyrosine-phosphatase High 0.001
    uBiome 3.1.3.5 5′-nucleotidase High 0.0001
    Thryve 3.1.3.50 sorbitol-6-phosphatase High 0.001
    Thryve 3.1.3.68 2-deoxyglucose-6-phosphatase High 0.001
    Thryve 3.1.3.77 acireductone synthase Low 0.0001
    BiomeSight 3.1.3.81 diacylglycerol diphosphate phosphatase Low 0.001
    BiomeSight 3.1.3.87 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase Low 0.001
    uBiome 3.1.3.97 3′,5′-nucleoside bisphosphate phosphatase High 0.001
    Thryve 3.1.6.6 choline-sulfatase High 0.001
    Thryve 3.1.6.8 cerebroside-sulfatase High 0.001
    Thryve 3.1.7.2 guanosine-3′,5′-bis(diphosphate) 3′-diphosphatase High 0.0001
    uBiome 3.1.7.2 guanosine-3′,5′-bis(diphosphate) 3′-diphosphatase High 0.001
    Thryve 3.10.1.1 N-sulfoglucosamine sulfohydrolase High 0.0001
    Thryve 3.13.1.1 UDP-sulfoquinovose synthase Low 0.0001
    BiomeSight 3.13.1.1 UDP-sulfoquinovose synthase Low 0.001
    BiomeSight 3.13.1.8 S-adenosyl-L-methionine hydrolase (adenosine-forming) Low 0.0001
    Thryve 3.2.1.11 dextranase High 0.0001
    Thryve 3.2.1.135 neopullulanase High 0.0001
    Thryve 3.2.1.15 endo-polygalacturonase Low 0.0001
    Thryve 3.2.1.180 unsaturated chondroitin disaccharide hydrolase High 0.001
    Thryve 3.2.1.183 UDP-N-acetylglucosamine 2-epimerase (hydrolysing) High 0.001
    Thryve 3.2.1.185 non-reducing end β-L-arabinofuranosidase Low 0.0001
    Thryve 3.2.1.197 β-1,2-mannosidase High 0.0001
    Thryve 3.2.1.202 endo-chitodextinase Low 0.001
    uBiome 3.2.1.22 α-galactosidase High 0.001
    Thryve 3.2.1.4 cellulase High 0.0001
    Thryve 3.2.1.65 levanase Low 0.0001
    BiomeSight 3.2.1.65 levanase Low 0.0001
    Thryve 3.2.1.8 endo-1,4-β-xylanase High 0.001
    BiomeSight 3.2.1.82 exo-poly-α-digalacturonosidase Low 0.001
    Thryve 3.2.1.91 cellulose 1,4-β-cellobiosidase (non-reducing end) Low 0.0001
    BiomeSight 3.2.1.94 glucan 1,6-α-isomaltosidase Low 0.0001
    Thryve 3.2.1.96 mannosyl-glycoprotein endo-β-N-acetylglucosaminidase Low 0.0001
    uBiome 3.2.2.27 uracil-DNA glycosylase High 0.001
    BiomeSight 3.2.2.30 aminodeoxyfutalosine nucleosidase Low 0.001
    uBiome 3.2.2.31 adenine glycosylase High 0.001
    Thryve 3.2.2.8 ribosylpyrimidine nucleosidase High 0.001
    Thryve 3.3.2.12 oxepin-CoA hydrolase High 0.001
    uBiome 3.4.11.18 methionyl aminopeptidase High 0.001
    uBiome 3.4.11.2 membrane alanyl aminopeptidase High 0.001
    uBiome 3.4.11.4 tripeptide aminopeptidase High 0.001
    uBiome 3.4.11.9 Xaa-Pro aminopeptidase High 0.001
    uBiome 3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase High 0.001
    Thryve 3.4.17.18 carboxypeptidase T Low 0.0001
    Thryve 3.4.21.53 endopeptidase La High 0.0001
    uBiome 3.4.21.89 signal peptidase I High 0.001
    uBiome 3.4.21.92 endopeptidase Clp High 0.001
    uBiome 3.4.21.96 lactocepin High 0.001
    uBiome 3.4.23.36 signal peptidase II High 0.001
    Thryve 3.4.23.49 omptin High 0.0001
    Thryve 3.4.24.25 vibriolysin Low 0.0001
    Thryve 3.4.24.28 bacillolysin Low 0.001
    Thryve 3.4.24.3 microbial collagenase Low 0.0001
    Thryve 3.4.24.56 insulysin Low 0.0001
    Thryve 3.5.1.1 asparaginase High 0.0001
    BiomeSight 3.5.1.101 L-proline amide hydrolase Low 0.001
    BiomeSight 3.5.1.103 N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-α-D-glucopyranoside deacetylase Low 0.001
    Thryve 3.5.1.104 peptidoglycan-N-acetylglucosamine deacetylase High 0.0001
    Thryve 3.5.1.116 ureidoglycolate amidohydrolase Low 0.0001
    BiomeSight 3.5.1.23 ceramidase High 0.001
    Thryve 3.5.1.42 nicotinamide-nucleotide amidase High 0.0001
    BiomeSight 3.5.1.68 N-formylglutamate deformylase Low 0.001
    uBiome 3.5.1.88 peptide deformylase High 0.001
    Thryve 3.5.1.90 adenosylcobinamide hydrolase Low 0.001
    BiomeSight 3.5.1.94 γ-glutamyl-γ-aminobutyrate hydrolase Low 0.001
    Thryve 3.5.1.97 acyl-homoserine-lactone acylase Low 0.0001
    uBiome 3.5.2.3 dihydroorotase High 0.001
    BiomeSight 3.5.3.13 formimidoylglutamate deiminase Low 0.001
    BiomeSight 3.5.3.4 allantoicase Low 0.0001
    BiomeSight 3.5.3.7 guanidinobutyrase Low 0.0001
    Thryve 3.5.3.7 guanidinobutyrase Low 0.0001
    Thryve 3.5.3.8 formimidoylglutamase High 0.001
    uBiome 3.5.4.10 IMP cyclohydrolase High 0.001
    uBiome 3.5.4.16 GTP cyclohydrolase I High 0.0001
    Thryve 3.5.4.19 phosphoribosyl-AMP cyclohydrolase High 0.0001
    BiomeSight 3.5.4.32 8-oxoguanine deaminase Low 0.0001
    uBiome 3.5.4.33 tRNA(adenine34) deaminase High 0.001
    uBiome 3.5.4.9 methenyltetrahydrofolate cyclohydrolase High 0.001
    uBiome 3.6.1.11 exopolyphosphatase High 0.001
    Thryve 3.6.1.16 CDP-glycerol diphosphatase High 0.0001
    Thryve 3.6.1.23 dUTP diphosphatase High 0.001
    uBiome 3.6.1.27 undecaprenyl-diphosphate phosphatase High 0.001
    Thryve 3.6.1.31 phosphoribosyl-ATP diphosphatase High 0.0001
    uBiome 3.6.1.40 guanosine-5′-triphosphate,3′-diphosphate phosphatase High 0.001
    Thryve 3.6.1.53 Mn2+-dependent ADP-ribose/CDP-alcohol diphosphatase High 0.0001
    Thryve 3.6.1.55 8-oxo-dGTP diphosphatase High 0.001
    uBiome 3.6.1.55 8-oxo-dGTP diphosphatase High 0.001
    Thryve 3.6.1.65 (d)CTP diphosphatase High 0.001
    uBiome 3.6.1.66 XTP/dITP diphosphatase High 0.0001
    uBiome 3.6.4.13 RNA helicase High 0.001
    uBiome 3.6.5.4 signal-recognition-particle GTPase High 0.001
    Thryve 3.7.1.2 fumarylacetoacetase Low 0.001
    Thryve 3.7.1.20 3-fumarylpyruvate hydrolase High 0.001
    BiomeSight 3.7.1.5 acylpyruvate hydrolase Low 0.0001
    Thryve 3.7.1.9 2-hydroxymuconate-6-semialdehyde hydrolase Low 0.0001
    BiomeSight 3.8.1.5 haloalkane dehalogenase Low 0.0001
    BiomeSight 4.1.1.116 D-ornithine/D-lysine decarboxylase Low 0.0001
    uBiome 4.1.1.20 diaminopimelate decarboxylase High 0.001
    uBiome 4.1.1.23 orotidine-5′-phosphate decarboxylase High 0.001
    uBiome 4.1.1.36 phosphopantothenoylcysteine decarboxylase High 0.001
    Thryve 4.1.1.37 uroporphyrinogen decarboxylase High 0.001
    BiomeSight 4.1.1.39 ribulose-bisphosphate carboxylase Low 0.0001
    uBiome 4.1.1.44 4-carboxymuconolactone decarboxylase High 0.0001
    BiomeSight 4.1.1.64 2,2-dialkylglycine decarboxylase (pyruvate) Low 0.001
    BiomeSight 4.1.1.71 2-oxoglutarate decarboxylase Low 0.0001
    Thryve 4.1.1.8 oxalyl-CoA decarboxylase High 0.001
    Thryve 4.1.1.86 diaminobutyrate decarboxylase Low 0.001
    uBiome 4.1.2.13 fructose-bisphosphate aldolase High 0.001
    Thryve 4.1.2.14 2-dehydro-3-deoxy-phosphogluconate aldolase High 0.001
    Thryve 4.1.2.4 deoxyribose-phosphate aldolase High 0.001
    Thryve 4.1.2.40 tagatose-bisphosphate aldolase High 0.0001
    uBiome 4.1.3.27 anthranilate synthase High 0.001
    Thryve 4.1.3.3 N-acetylneuraminate lyase High 0.001
    BiomeSight 4.1.3.34 citryl-CoA lyase Low 0.001
    Thryve 4.1.3.42 (4S)-4-hydroxy-2-oxoglutarate aldolase High 0.001
    uBiome 4.2.1.10 3-dehydroquinate dehydratase High 0.001
    Thryve 4.2.1.109 methylthioribulose 1-phosphate dehydratase Low 0.001
    uBiome 4.2.1.11 phosphopyruvate hydratase High 0.001
    Thryve 4.2.1.136 ADP-dependent NAD(P)H-hydrate dehydratase High 0.0001
    uBiome 4.2.1.20 tryptophan synthase High 0.001
    BiomeSight 4.2.1.22 cystathionine β-synthase Low 0.0001
    Thryve 4.2.1.3 aconitate hydratase High 0.0001
    uBiome 4.2.1.33 3-isopropylmalate dehydratase High 0.001
    uBiome 4.2.1.35 (R)-2-methylmalate dehydratase High 0.001
    uBiome 4.2.1.46 dTDP-glucose 4,6-dehydratase High 0.001
    uBiome 4.2.1.51 prephenate dehydratase High 0.001
    Thryve 4.2.1.53 oleate hydratase High 0.0001
    BiomeSight 4.2.1.53 oleate hydratase Low 0.0001
    Thryve 4.2.1.7 altronate dehydratase High 0.001
    BiomeSight 4.2.1.85 dimethylmaleate hydratase Low 0.001
    Thryve 4.2.1.90 L-rhamnonate dehydratase High 0.001
    BiomeSight 4.2.2.2 pectate lyase Low 0.0001
    Thryve 4.2.2.20 chondroitin-sulfate-ABC endolyase High 0.0001
    Thryve 4.2.2.21 chondroitin-sulfate-ABC exolyase High 0.0001
    Thryve 4.2.3.1 threonine synthase High 0.001
    Thryve 4.2.3.130 tetraprenyl-β-curcumene synthase Low 0.0001
    Thryve 4.2.3.3 methylglyoxal synthase High 0.0001
    Thryve 4.2.3.4 3-dehydroquinate synthase High 0.001
    uBiome 4.2.3.4 3-dehydroquinate synthase High 0.001
    uBiome 4.2.3.5 chorismate synthase High 0.001
    uBiome 4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase High 0.001
    BiomeSight 4.3.1.12 ornithine cyclodeaminase Low 0.0001
    Thryve 4.3.1.16 threo-3-hydroxy-L-aspartate ammonia-lyase Low 0.0001
    uBiome 4.3.1.17 L-serine ammonia-lyase High 0.001
    BiomeSight 4.3.1.32 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase Low 0.0001
    uBiome 4.3.2.2 adenylosuccinate lyase High 0.001
    uBiome 4.3.3.7 4-hydroxy-tetrahydrodipicolinate synthase High 0.001
    uBiome 4.4.1.13 cysteine-S-conjugate β-lyase High 0.001
    BiomeSight 4.4.1.24 (2R)-sulfolactate sulfo-lyase Low 0.001
    BiomeSight 4.4.1.38 isethionate sulfite-lyase Low 0.001
    Thryve 4.6.1.1 adenylate cyclase High 0.001
    uBiome 4.6.1.12 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase High 0.001
    uBiome 5.1.1.1 alanine racemase High 0.001
    BiomeSight 5.1.1.18 serine racemase Low 0.001
    uBiome 5.1.1.7 diaminopimelate epimerase High 0.001
    Thryve 5.1.1.8 4-hydroxyproline epimerase Low 0.001
    uBiome 5.1.3.1 ribulose-phosphate 3-epimerase High 0.001
    Thryve 5.1.3.13 dTDP-4-dehydrorhamnose 3,5-epimerase High 0.0001
    uBiome 5.1.3.2 UDP-glucose 4-epimerase High 0.001
    BiomeSight 5.1.3.20 ADP-glyceromanno-heptose 6-epimerase Low 0.001
    Thryve 5.1.3.26 N-acetyl-α-D-glucosaminyl-diphospho-ditrans,octacis-undecaprenol 4-epimerase High 0.001
    BiomeSight 5.1.3.37 mannuronan 5-epimerase Low 0.0001
    BiomeSight 5.1.3.38 D-erythrulose 1-phosphate 3-epimerase Low 0.001
    Thryve 5.1.3.41 fructoselysine 3-epimerase High 0.001
    Thryve 5.1.3.6 UDP-glucuronate 4-epimerase High 0.001
    uBiome 5.1.99.6 NAD(P)H-hydrate epimerase High 0.001
    BiomeSight 5.2.1.1 maleate isomerase Low 0.0001
    uBiome 5.2.1.8 peptidylprolyl isomerase High 0.001
    uBiome 5.3.1.1 triose-phosphate isomerase High 0.001
    Thryve 5.3.1.14 L-rhamnose isomerase High 0.0001
    Thryve 5.3.1.6 ribose-5-phosphate isomerase High 0.001
    uBiome 5.3.1.6 ribose-5-phosphate isomerase High 0.001
    uBiome 5.3.1.9 glucose-6-phosphate isomerase High 0.001
    BiomeSight 5.3.2.1 phenylpyruvate tautomerase Low 0.0001
    Thryve 5.3.3.17 trans-2,3-dihydro-3-hydroxyanthranilate isomerase Low 0.0001
    BiomeSight 5.3.3.4 muconolactone Δ-isomerase Low 0.0001
    uBiome 5.4.2.2 phosphoglucomutase (α-D-glucose-1,6-bisphosphate-dependent) High 0.001
    Thryve 5.4.3.9 glutamate 2,3-aminomutase Low 0.0001
    uBiome 5.4.99.12 tRNA pseudouridine38-40 synthase High 0.001
    BiomeSight 5.4.99.13 isobutyryl-CoA mutase Low 0.0001
    uBiome 5.4.99.18 5-(carboxyamino)imidazole ribonucleotide mutase High 0.001
    uBiome 5.4.99.22 23S rRNA pseudouridine2605 synthase High 0.001
    uBiome 5.4.99.23 23S rRNA pseudouridine1911/1915/1917 synthase High 0.001
    uBiome 5.4.99.25 tRNA pseudouridine55 synthase High 0.001
    BiomeSight 5.4.99.26 tRNA pseudouridine65 synthase Low 0.0001
    Thryve 5.4.99.28 tRNA pseudouridine32 synthase High 0.001
    Thryve 5.4.99.29 23S rRNA pseudouridine746 synthase High 0.001
    uBiome 5.4.99.5 chorismate mutase High 0.001
    Thryve 5.4.99.9 UDP-galactopyranose mutase High 0.001
    Thryve 5.5.1.1 muconate cycloisomerase Low 0.0001
    uBiome 5.6.2.1 DNA topoisomerase High 0.001
    uBiome 5.6.2.2 DNA topoisomerase (ATP-hydrolysing) High 0.001
    uBiome 5.6.2.3 DNA 5′-3′ helicase High 0.001
    uBiome 5.6.2.4 DNA 3′-5′ helicase High 0.001
    uBiome 6.1.1.1 tyrosine—tRNA ligase High 0.001
    uBiome 6.1.1.10 methionine—tRNA ligase High 0.001
    Thryve 6.1.1.10 methionine—tRNA ligase High 0.0001
    uBiome 6.1.1.11 serine—tRNA ligase High 0.001
    uBiome 6.1.1.12 aspartate—tRNA ligase High 0.001
    uBiome 6.1.1.14 glycine—tRNA ligase High 0.001
    uBiome 6.1.1.15 proline—tRNA ligase High 0.001
    uBiome 6.1.1.16 cysteine—tRNA ligase High 0.001
    uBiome 6.1.1.19 arginine—tRNA ligase High 0.001
    uBiome 6.1.1.2 tryptophan—tRNA ligase High 0.001
    uBiome 6.1.1.20 phenylalanine—tRNA ligase High 0.001
    uBiome 6.1.1.21 histidine—tRNA ligase High 0.001
    uBiome 6.1.1.3 threonine—tRNA ligase High 0.001
    uBiome 6.1.1.4 leucine—tRNA ligase High 0.001
    uBiome 6.1.1.5 isoleucine—tRNA ligase High 0.001
    uBiome 6.1.1.6 lysine—tRNA ligase High 0.001
    uBiome 6.1.1.7 alanine—tRNA ligase High 0.001
    uBiome 6.1.1.9 valine—tRNA ligase High 0.001
    BiomeSight 6.1.3.1 olefin β-lactone synthetase Low 0.0001
    Thryve 6.2.1.13 acetate—CoA ligase (ADP-forming) High 0.001
    Thryve 6.2.1.7 cholate—CoA ligase High 0.001
    Thryve 6.3.1.1 aspartate—ammonia ligase High 0.001
    Thryve 6.3.1.11 glutamate—putrescine ligase High 0.001
    BiomeSight 6.3.1.13 L-cysteine:1D-myo-inositol 2-amino-2-deoxy-α-D-glucopyranoside ligase Low 0.001
    uBiome 6.3.1.2 glutamine synthetase High 0.001
    uBiome 6.3.2.10 UDP-N-acetylmuramoyl-tripeptide—D-alanyl-D-alanine ligase High 0.001
    uBiome 6.3.2.12 dihydrofolate synthase High 0.001
    uBiome 6.3.2.17 tetrahydrofolate synthase High 0.001
    uBiome 6.3.2.4 D-alanine—D-alanine ligase High 0.001
    uBiome 6.3.2.5 phosphopantothenate—cysteine ligase (CTP) High 0.001
    uBiome 6.3.2.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase High 0.001
    uBiome 6.3.2.8 UDP-N-acetylmuramate—L-alanine ligase High 0.001
    uBiome 6.3.2.9 UDP-N-acetylmuramoyl-L-alanine—D-glutamate ligase High 0.001
    uBiome 6.3.3.2 5-formyltetrahydrofolate cyclo-ligase High 0.001
    uBiome 6.3.4.13 phosphoribosylamine—glycine ligase High 0.001
    uBiome 6.3.4.14 biotin carboxylase High 0.001
    uBiome 6.3.4.19 tRNAIle-lysidine synthase High 0.001
    uBiome 6.3.4.2 CTP synthase (glutamine hydrolysing) High 0.001
    uBiome 6.3.4.3 formate—tetrahydrofolate ligase High 0.001
    uBiome 6.3.4.4 adenylosuccinate synthase High 0.001
    uBiome 6.3.5.2 GMP synthase (glutamine-hydrolysing) High 0.001
    uBiome 6.3.5.3 phosphoribosylformylglycinamidine synthase High 0.001
    Thryve 6.3.5.4 asparagine synthase (glutamine-hydrolysing) High 0.001
    uBiome 6.3.5.5 carbamoyl-phosphate synthase (glutamine-hydrolysing) High 0.001
    Thryve 6.4.1.2 acetyl-CoA carboxylase High 0.0001
    uBiome 6.5.1.2 DNA ligase (NAD+) High 0.001
    BiomeSight 7.1.1.1 proton-translocating NAD(P)+ transhydrogenase Low 0.001
    Thryve 7.1.1.11 ferredoxin—NAD+ oxidoreductase (H+-transporting) High 0.001
    Thryve 7.1.1.3 ubiquinol oxidase (H+-transporting) High 0.001
    BiomeSight 7.1.1.5 menaquinol oxidase (H+-transporting) Low 0.0001
    uBiome 7.1.2.2 H+-transporting two-sector ATPase High 0.001
    Thryve 7.2.1.2 ferredoxin—NAD+ oxidoreductase (Na+-transporting) High 0.001
    uBiome 7.2.2.1 Na+-transporting two-sector ATPase High 0.001
    uBiome 7.2.2.10 P-type Ca2+ transporter High 0.001
    Thryve 7.2.4.1 carboxybiotin decarboxylase High 0.0001
    uBiome 7.3.2.1 ABC-type phosphate transporter High 0.001
    Thryve 7.3.2.6 ABC-type tungstate transporter High 0.001
    Thryve 7.3.2.7 arsenite-transporting ATPase High 0.001
    uBiome 7.4.2.8 protein-secreting ATPase High 0.001
    Thryve 7.6.2.14 ABC-type aliphatic sulfonate transporter Low 0.001
    uBiome 7.6.2.5 ABC-type heme transporter High 0.001

    Compound Associations

    A few of these compounds may be available as supplements. The other route are probiotics that consumes or produces these compounds.

    Lab CP ID Compound Name Direction Probability
    Thryve C04434 (1E)-4-Oxobut-1-ene-1,2,4-tricarboxylate Low 0.0001
    BiomeSight C06321 (1R,6S)-1,6-Dihydroxycyclohexa-2,4-diene-1-carboxylate Low 0.0001
    Thryve C06321 (1R,6S)-1,6-Dihydroxycyclohexa-2,4-diene-1-carboxylate High 0.0001
    Thryve C19831 (1R,6S)-6-Amino-5-oxocyclohex-2-ene-1-carboxylate Low 0.0001
    BiomeSight C04030 (2,3-Dihydroxybenzoyl)adenylate Low 0.0001
    Thryve C04030 (2,3-Dihydroxybenzoyl)adenylate Low 0.0001
    uBiome C04030 (2,3-Dihydroxybenzoyl)adenylate Low 0.0001
    Thryve C21453 (2-Aminobenzoyl)acetate Low 0.001
    Thryve C21452 (2-Aminobenzoyl)acetyl-CoA High 0.001
    Thryve C21020 (2'R)-2'-Hydroxyphytoceramide Low 0.001
    BiomeSight C21417 (2R,3R)-Dihydroflavonol Low 0.001
    Thryve C04411 (2R,3S)-3-Isopropylmalate Low 0.001
    BiomeSight C04236 (2S)-2-Isopropyl-3-oxosuccinate Low 0.0001
    Thryve C04236 (2S)-2-Isopropyl-3-oxosuccinate Low 0.0001
    uBiome C04236 (2S)-2-Isopropyl-3-oxosuccinate Low 0.0001
    Thryve C21181 (2S)-3-Sulfolactaldehyde Low 0.0001
    Thryve C19155 (2S)-Lactyl-2-diphospho-5'-guanosine Low 0.0001
    uBiome C20258 (2S,4S)-4-Hydroxy-2,3,4,5-tetrahydrodipicolinate High 0.001
    BiomeSight C20844 (2Z,4S,5R)-2-Amino-4,5,6-trihydroxyhex-2-enoate Low 0.0001
    Thryve C20844 (2Z,4S,5R)-2-Amino-4,5,6-trihydroxyhex-2-enoate Low 0.0001
    uBiome C20844 (2Z,4S,5R)-2-Amino-4,5,6-trihydroxyhex-2-enoate Low 0.0001
    Thryve C21761 (3R)-3-Hydroxy-4-oxobutanoate High 0.001
    BiomeSight C01186 (3S,5S)-3,5-Diaminohexanoate Low 0.0001
    Thryve C01186 (3S,5S)-3,5-Diaminohexanoate Low 0.0001
    uBiome C01186 (3S,5S)-3,5-Diaminohexanoate Low 0.0001
    Thryve C04349 (4S)-4,6-Dihydroxy-2,5-dioxohexanoate High 0.001
    Thryve C20485 (4S)-4-Hydroxy-2-oxoglutarate Low 0.001
    BiomeSight C20845 (4S,5R)-4,5,6-Trihydroxy-2-iminohexanoate Low 0.0001
    Thryve C20845 (4S,5R)-4,5,6-Trihydroxy-2-iminohexanoate Low 0.0001
    uBiome C20845 (4S,5R)-4,5,6-Trihydroxy-2-iminohexanoate Low 0.0001
    Thryve C20482 (6R)-6beta-Hydroxy-1,4,5,6-tetrahydronicotinamide-adenine dinucleotide Low 0.0001
    uBiome C20482 (6R)-6beta-Hydroxy-1,4,5,6-tetrahydronicotinamide-adenine dinucleotide Low 0.001
    Thryve C20483 (6R)-6beta-Hydroxy-1,4,5,6-tetrahydronicotinamide-adenine dinucleotide phosphate Low 0.0001
    uBiome C20483 (6R)-6beta-Hydroxy-1,4,5,6-tetrahydronicotinamide-adenine dinucleotide phosphate Low 0.001
    Thryve C20933 (9Z)-Hexadec-9-enoyl-KDO2-lipid IV(A) High 0.0001
    BiomeSight C00712 (9Z)-Octadecenoic acid Low 0.0001
    Thryve C00712 (9Z)-Octadecenoic acid High 0.0001
    Thryve C20748 (E)-4-(Trimethylammonio)but-2-enoyl-CoA Low 0.0001
    BiomeSight C22385 (L-Cysteinyl)adenylate Low 0.0001
    Thryve C22385 (L-Cysteinyl)adenylate Low 0.0001
    uBiome C22385 (L-Cysteinyl)adenylate Low 0.0001
    BiomeSight C05820 (L-Seryl)adenylate Low 0.0001
    Thryve C05820 (L-Seryl)adenylate Low 0.0001
    BiomeSight C03195 (R)-10-Hydroxystearate High 0.0001
    Thryve C03195 (R)-10-Hydroxystearate Low 0.0001
    Thryve C04272 (R)-2,3-Dihydroxy-3-methylbutanoate Low 0.0001
    uBiome C21089 (R)-2-Hydroxyisocaproyl-CoA Low 0.0001
    Thryve C01205 (R)-3-Amino-2-methylpropanoate High 0.0001
    Thryve C04352 (R)-4'-Phosphopantothenoyl-L-cysteine Low 0.0001
    uBiome C04352 (R)-4'-Phosphopantothenoyl-L-cysteine Low 0.0001
    BiomeSight C01143 (R)-5-Diphosphomevalonate Low 0.001
    Thryve C01143 (R)-5-Diphosphomevalonate Low 0.0001
    uBiome C01143 (R)-5-Diphosphomevalonate Low 0.0001
    BiomeSight C01107 (R)-5-Phosphomevalonate Low 0.0001
    Thryve C01107 (R)-5-Phosphomevalonate Low 0.0001
    BiomeSight C00810 (R)-Acetoin Low 0.0001
    Thryve C00810 (R)-Acetoin Low 0.0001
    uBiome C00810 (R)-Acetoin Low 0.0001
    BiomeSight C01769 (S)-Acetoin Low 0.0001
    Thryve C01769 (S)-Acetoin Low 0.0001
    uBiome C01769 (S)-Acetoin Low 0.0001
    uBiome C00337 (S)-Dihydroorotate Low 0.001
    Thryve C00424 (S)-Lactaldehyde High 0.001
    BiomeSight C21069 [5-(Aminomethyl)furan-3-yl]methyl diphosphate Low 0.0001
    BiomeSight C11826 [GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-g-D-Glu-L-Lys-D-Ala-D-Ala)]n-diphosphoundecaprenol Low 0.0001
    Thryve C11826 [GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-g-D-Glu-L-Lys-D-Ala-D-Ala)]n-diphosphoundecaprenol Low 0.0001
    uBiome C11826 [GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-g-D-Glu-L-Lys-D-Ala-D-Ala)]n-diphosphoundecaprenol Low 0.0001
    Thryve C22159 [Glycine cleavage system H]-N6-octanoyl-L-lysine Low 0.001
    BiomeSight C19710 [L-Asp(4-L-Arg)]n-L-Asp Low 0.0001
    Thryve C19710 [L-Asp(4-L-Arg)]n-L-Asp Low 0.0001
    BiomeSight C01281 [L-Glutamate:ammonia ligase (ADP-forming)] Low 0.0001
    Thryve C01281 [L-Glutamate:ammonia ligase (ADP-forming)] Low 0.0001
    uBiome C01281 [L-Glutamate:ammonia ligase (ADP-forming)] Low 0.0001
    uBiome C20730 [Protein]-FMN-L-Threonine High 0.001
    Thryve C19803 [Protein]-L-threonine Low 0.0001
    uBiome C19803 [Protein]-L-threonine Low 0.001
    Thryve C16236 [Protein]-N6-(octanoyl)-L-lysine Low 0.001
    Thryve C21814 [SoxY protein]-S-disulfanyl-L-cysteine Low 0.0001
    BiomeSight C21898 [SoxY protein]-S-sulfanyl-L-cysteine Low 0.0001
    BiomeSight C21879 1-(5-O-Phospho-beta-D-ribofuranosyl)-5-(sulfanylcarbonyl)pyridin-1-ium-3-carbonyl adenylate Low 0.0001
    Thryve C21879 1-(5-O-Phospho-beta-D-ribofuranosyl)-5-(sulfanylcarbonyl)pyridin-1-ium-3-carbonyl adenylate Low 0.0001
    uBiome C21879 1-(5-O-Phospho-beta-D-ribofuranosyl)-5-(sulfanylcarbonyl)pyridin-1-ium-3-carbonyl adenylate Low 0.0001
    Thryve C02739 1-(5-Phospho-D-ribosyl)-ATP Low 0.0001
    uBiome C02739 1-(5-Phospho-D-ribosyl)-ATP Low 0.001
    uBiome C04677 1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide High 0.001
    uBiome C04734 1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide High 0.001
    Thryve C02490 1,2-beta-D-Glucan Low 0.0001
    uBiome C02490 1,2-beta-D-Glucan Low 0.001
    Thryve C04850 1,3-beta-D-Galactosyl-(alpha-1,4-L-fucosyl)-N-acetyl-D-glucosaminyl-R Low 0.001
    Thryve C04656 1,3-beta-D-Galactosyl-N-acetyl-D-glucosaminyl-R High 0.001
    Thryve C15547 1,4-Dihydroxy-2-naphthoyl-CoA High 0.001
    Thryve C06485 1,5-Anhydro-D-fructose High 0.0001
    Thryve C16538 1,5-Anhydro-D-mannitol Low 0.0001
    Thryve C19769 1,6-Anhydro-N-acetyl-beta-muramate Low 0.001
    Thryve C21908 12alpha-Hydroxy-3-oxochol-4-en-24-oyl-CoA Low 0.0001
    Thryve C21907 12alpha-Hydroxy-3-oxocholan-24-oyl-CoA Low 0.001
    BiomeSight C11630 15,16-Dihydrobiliverdin Low 0.0001
    BiomeSight C19765 15,9'-dicis-Phytofluene Low 0.0001
    Thryve C20667 15-Oxo-beta-bilirubin Low 0.0001
    Thryve C11811 1-Hydroxy-2-methyl-2-butenyl 4-diphosphate Low 0.001
    BiomeSight C19702 1-O-(2-Amino-2-deoxy-alpha-D-glucopyranosyl)-1D-myo-inositol High 0.001
    BiomeSight C19703 1-O-[2-(L-Cysteinamido)-2-deoxy-alpha-D-glucopyranosyl]-1D-myo-inositol Low 0.001
    BiomeSight C04037 1-Phospho-alpha-D-galacturonate Low 0.001
    Thryve C19771 2'-(5-Triphosphoribosyl)-3'-dephospho-CoA Low 0.001
    uBiome C19771 2'-(5-Triphosphoribosyl)-3'-dephospho-CoA Low 0.001
    Thryve C21731 2-(Hydroxysulfanyl)hercynine Low 0.0001
    Thryve C20518 2,3-Bis-(O-phytanyl)-sn-glycerol 1-phosphate High 0.0001
    BiomeSight C01159 2,3-Bisphospho-D-glycerate Low 0.0001
    Thryve C01159 2,3-Bisphospho-D-glycerate Low 0.0001
    uBiome C01159 2,3-Bisphospho-D-glycerate Low 0.0001
    Thryve C20797 2,3-Dihydroxypropane-1-sulfonate Low 0.001
    BiomeSight C15650 2,3-Diketo-5-methylthiopentyl-1-phosphate Low 0.0001
    Thryve C15650 2,3-Diketo-5-methylthiopentyl-1-phosphate Low 0.001
    BiomeSight C19684 2,3-Epoxy-2,3-dihydrobenzoyl-CoA Low 0.0001
    BiomeSight C20424 2,4-Diacetamido-2,4,6-trideoxy-D-mannopyranose Low 0.0001
    Thryve C20424 2,4-Diacetamido-2,4,6-trideoxy-D-mannopyranose Low 0.001
    uBiome C20424 2,4-Diacetamido-2,4,6-trideoxy-D-mannopyranose Low 0.0001
    Thryve C21896 2,4-Diacetylphloroglucinol High 0.0001
    Thryve C21895 2-Acetylphloroglucinol Low 0.0001
    BiomeSight C17234 2-Aminobut-2-enoate Low 0.0001
    Thryve C17234 2-Aminobut-2-enoate Low 0.0001
    uBiome C17234 2-Aminobut-2-enoate Low 0.0001
    BiomeSight C16826 2-cis,6-trans-Farnesyl diphosphate Low 0.0001
    uBiome C11453 2-C-Methyl-D-erythritol 2,4-cyclodiphosphate High 0.001
    uBiome C11434 2-C-Methyl-D-erythritol 4-phosphate Low 0.001
    BiomeSight C01286 2-Dehydro-3-deoxy-6-phospho-D-galactonate Low 0.0001
    Thryve C01286 2-Dehydro-3-deoxy-6-phospho-D-galactonate Low 0.0001
    BiomeSight C00684 2-Dehydro-3-deoxy-L-arabinonate Low 0.0001
    BiomeSight C21618 2-Dehydro-L-erythronate Low 0.001
    uBiome C21618 2-Dehydro-L-erythronate Low 0.0001
    uBiome C05818 2-Demethylmenaquinone High 0.001
    Thryve C00586 2-Deoxy-D-glucose High 0.001
    Thryve C06369 2-Deoxy-D-glucose 6-phosphate Low 0.001
    Thryve C00673 2-Deoxy-D-ribose 5-phosphate Low 0.001
    uBiome C06196 2'-Deoxyinosine 5'-phosphate High 0.0001
    uBiome C04232 2'-Deoxyribonucleoside diphosphate Low 0.001
    BiomeSight C00596 2-Hydroxy-2,4-pentadienoate Low 0.0001
    BiomeSight C15651 2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate Low 0.0001
    Thryve C15651 2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate Low 0.0001
    BiomeSight C03217 2-Hydroxy-3-oxoadipate Low 0.0001
    BiomeSight C02763 2-Hydroxy-3-phenylpropenoate Low 0.0001
    BiomeSight C04642 2-Hydroxy-5-carboxymethylmuconate semialdehyde Low 0.001
    Thryve C07343 2-Hydroxyphytanoyl-CoA Low 0.0001
    BiomeSight C02631 2-Isopropylmaleate Low 0.0001
    Thryve C02631 2-Isopropylmaleate Low 0.0001
    uBiome C02631 2-Isopropylmaleate Low 0.0001
    BiomeSight C02222 2-Maleylacetate Low 0.0001
    BiomeSight C03345 2-Methylbut-2-enoyl-CoA High 0.0001
    BiomeSight C01033 2-Methylbutanoyl-CoA Low 0.0001
    BiomeSight C02225 2-Methylcitrate Low 0.0001
    Thryve C02225 2-Methylcitrate Low 0.0001
    uBiome C02226 2-Methylmaleate High 0.001
    uBiome C00026 2-Oxoglutarate Low 0.001
    uBiome C00631 2-Phospho-D-glycerate Low 0.001
    Thryve C00988 2-Phosphoglycolate Low 0.0001
    BiomeSight C13309 2-Phytyl-1,4-naphthoquinone Low 0.0001
    BiomeSight C17551 2-Polyprenyl-6-hydroxyphenol Low 0.0001
    Thryve C17551 2-Polyprenyl-6-hydroxyphenol Low 0.0001
    BiomeSight C03160 2-Succinylbenzoyl-CoA Low 0.0001
    Thryve C03160 2-Succinylbenzoyl-CoA Low 0.0001
    uBiome C03160 2-Succinylbenzoyl-CoA Low 0.001
    Thryve C04044 3-(2,3-Dihydroxyphenyl)propanoate High 0.001
    Thryve C11457 3-(3-Hydroxyphenyl)propanoic acid Low 0.001
    BiomeSight C04793 3,4-Dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione Low 0.001
    Thryve C04793 3,4-Dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione Low 0.0001
    Thryve C02933 3,5-Dichlorocatechol Low 0.0001
    BiomeSight C20772 3-[(1-Carboxyvinyl)oxy]benzoate Low 0.0001
    Thryve C20772 3-[(1-Carboxyvinyl)oxy]benzoate Low 0.0001
    uBiome C20772 3-[(1-Carboxyvinyl)oxy]benzoate Low 0.0001
    Thryve C22330 3-Amino-5-[(4-hydroxyphenyl)methyl]-4,4-dimethylpyrrolidin-2-one Low 0.0001
    Thryve C05574 3-Aminopentanedioate Low 0.001
    Thryve C21610 3-Dehydro-4-phospho-D-erythronate Low 0.0001
    uBiome C21610 3-Dehydro-4-phospho-D-erythronate Low 0.0001
    Thryve C21611 3-Dehydro-4-phospho-L-erythronate Low 0.0001
    uBiome C21611 3-Dehydro-4-phospho-L-erythronate Low 0.0001
    uBiome C21612 3-Dehydro-L-erythronate Low 0.0001
    uBiome C03064 3-Dehydro-L-threonate Low 0.0001
    uBiome C02637 3-Dehydroshikimate High 0.001
    BiomeSight C21860 3-Demethylubiquinol Low 0.0001
    Thryve C21860 3-Demethylubiquinol Low 0.0001
    uBiome C20934 3-Deoxy-D-glycero-D-galacto-non-2-ulopyranosonate Low 0.0001
    uBiome C01187 3-Deoxy-D-manno-octulosonate Low 0.001
    uBiome C04478 3-Deoxy-D-manno-octulosonate 8-phosphate Low 0.0001
    BiomeSight C20968 3-Hydroxy-3-(methylthio)propanoyl-CoA Low 0.0001
    Thryve C00587 3-Hydroxybenzoate Low 0.001
    Thryve C00969 3-Hydroxypropanal High 0.001
    Thryve C02515 3-Iodo-L-tyrosine Low 0.0001
    BiomeSight C03069 3-Methylcrotonyl-CoA Low 0.001
    Thryve C20354 3-O-alpha-D-Glucopyranosyl-L-rhamnopyranose High 0.001
    Thryve C04482 3-O-L-Lysyl-1-O-phosphatidylglycerol High 0.001
    BiomeSight C20762 3-O-Phospho-alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-[alpha-D-Man-(1->3)-alpha-D-Man-(1->3)-alpha-D-Man-(1->2)-alpha-D-Man-(1->2)]n-alpha-D-Man-(1->3)-alpha-D-Man-(1->3)-alpha-D-Man-(1->3)-alpha-D-GlcNAc-diphospho-ditrans,octacis-undecaprenol Low 0.0001
    Thryve C20762 3-O-Phospho-alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-[alpha-D-Man-(1->3)-alpha-D-Man-(1->3)-alpha-D-Man-(1->2)-alpha-D-Man-(1->2)]n-alpha-D-Man-(1->3)-alpha-D-Man-(1->3)-alpha-D-Man-(1->3)-alpha-D-GlcNAc-diphospho-ditrans,octacis-undecaprenol Low 0.0001
    BiomeSight C19946 3-Oxo-5,6-dehydrosuberyl-CoA semialdehyde Low 0.0001
    Thryve C19946 3-Oxo-5,6-dehydrosuberyl-CoA semialdehyde Low 0.0001
    uBiome C19946 3-Oxo-5,6-dehydrosuberyl-CoA semialdehyde Low 0.0001
    uBiome C00685 3-Oxoacyl-[acyl-carrier protein] High 0.001
    Thryve C21906 3-Oxochol-4-en-24-oyl-CoA Low 0.0001
    Thryve C21905 3-Oxocholan-24-oyl-CoA Low 0.001
    Thryve C05753 3-Oxodecanoyl-[acp] Low 0.0001
    Thryve C02941 3-Oxo-Delta1-steroid Low 0.0001
    Thryve C22278 3-Oxoisoapionate 4-phosphate Low 0.0001
    BiomeSight C05989 3-Oxopropionyl-CoA Low 0.0001
    Thryve C01876 3-Oxosteroid High 0.0001
    uBiome C00236 3-Phospho-D-glyceroyl phosphate High 0.001
    Thryve C03232 3-Phosphonooxypyruvate High 0.0001
    BiomeSight C02798 3-Phosphonopyruvate Low 0.0001
    BiomeSight C07303 4-Hydroxy-3-methoxyphenyl-beta-hydroxypropanoyl-CoA Low 0.0001
    Thryve C07303 4-Hydroxy-3-methoxyphenyl-beta-hydroxypropanoyl-CoA Low 0.0001
    BiomeSight C05848 4-Hydroxy-3-polyprenylbenzoate Low 0.0001
    Thryve C05848 4-Hydroxy-3-polyprenylbenzoate Low 0.0001
    uBiome C05848 4-Hydroxy-3-polyprenylbenzoate Low 0.0001
    BiomeSight C02949 4-Hydroxybenzoyl-CoA Low 0.001
    Thryve C02949 4-Hydroxybenzoyl-CoA High 0.001
    uBiome C00233 4-Methyl-2-oxopentanoate High 0.001
    Thryve C21849 4-O-(2-N-Acetyl-beta-D-glucosaminyl-D-ribitylphospho)n-di[(2R)-1-glycerophospho]-N-acetyl-beta-D-mannosaminyl-(1->4)-N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,octacis-undecaprenol Low 0.0001
    Thryve C22412 4-O-{Poly[(2R)-2-alpha-D-glucosyl-1-glycerophospho]-(2R)-glycerophospho}-N-acetyl-beta-D-mannosaminyl-(1->4)-N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,octacis-undecaprenol Low 0.0001
    Thryve C22373 4-O-Methyl-D-glucopyranuronate ester Low 0.001
    Thryve C22374 4-O-Methyl-D-glucuronic acid High 0.001
    BiomeSight C19877 4-O-Phospho-alpha-Kdo-(2->6)-lipid IVA Low 0.0001
    uBiome C21585 4-Phospho-D-threonate Low 0.001
    uBiome C03082 4-Phospho-L-aspartate High 0.001
    uBiome C00445 5,10-Methenyltetrahydrofolate High 0.001
    uBiome C00143 5,10-Methylenetetrahydrofolate Low 0.001
    Thryve C22332 5-[(4-Hydroxyphenyl)methyl]-3-imino-4,4-dimethylpyrrolidin-2-one Low 0.0001
    BiomeSight C21971 5-Amino-5-(4-hydroxybenzyl)-6-(D-ribitylimino)-5,6-dihydrouracil Low 0.0001
    Thryve C21971 5-Amino-5-(4-hydroxybenzyl)-6-(D-ribitylimino)-5,6-dihydrouracil Low 0.0001
    BiomeSight C21877 5-Carboxy-1-(5-O-phospho-beta-D-ribofuranosyl)pyridin-1-ium-3-carbonyl adenylate Low 0.0001
    Thryve C21877 5-Carboxy-1-(5-O-phospho-beta-D-ribofuranosyl)pyridin-1-ium-3-carbonyl adenylate Low 0.0001
    uBiome C21877 5-Carboxy-1-(5-O-phospho-beta-D-ribofuranosyl)pyridin-1-ium-3-carbonyl adenylate Low 0.0001
    Thryve C15667 5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole Low 0.001
    Thryve C04053 5-Dehydro-4-deoxy-D-glucuronate High 0.001
    BiomeSight C03771 5-Guanidino-2-oxopentanoate Low 0.0001
    BiomeSight C22267 5-Methylaminomethyl-2-(Se-phospho)selenouridine34 in tRNA Low 0.0001
    Thryve C22267 5-Methylaminomethyl-2-(Se-phospho)selenouridine34 in tRNA Low 0.0001
    uBiome C22267 5-Methylaminomethyl-2-(Se-phospho)selenouridine34 in tRNA Low 0.0001
    BiomeSight C22266 5-Methylaminomethyl-2-(S-geranyl)thiouridine34 in tRNA Low 0.0001
    Thryve C22266 5-Methylaminomethyl-2-(S-geranyl)thiouridine34 in tRNA Low 0.0001
    uBiome C22266 5-Methylaminomethyl-2-(S-geranyl)thiouridine34 in tRNA Low 0.0001
    uBiome C00170 5'-Methylthioadenosine Low 0.0001
    BiomeSight C01269 5-O-(1-Carboxyvinyl)-3-phosphoshikimate Low 0.0001
    uBiome C01269 5-O-(1-Carboxyvinyl)-3-phosphoshikimate Low 0.0001
    Thryve C20666 5-Oxo-delta-bilirubin Low 0.0001
    uBiome C00119 5-Phospho-alpha-D-ribose 1-diphosphate High 0.0001
    Thryve C03090 5-Phosphoribosylamine Low 0.0001
    uBiome C02520 5'-Ribonucleotide Low 0.0001
    Thryve C16848 6-Deoxy-5-ketofructose 1-phosphate Low 0.001
    Thryve C16614 6-Methylmercaptopurine Low 0.001
    BiomeSight C15858 7,9,7',9'-tetracis-Lycopene Low 0.0001
    BiomeSight C19759 7,9,9'-tricis-Neurosporene Low 0.0001
    Thryve C21910 7alpha,12alpha-Dihydroxy-3-oxochol-24-oyl-CoA Low 0.001
    Thryve C21469 7alpha,12alpha-Dihydroxy-3-oxochol-4-en-24-oyl-CoA High 0.001
    Thryve C21909 7alpha-Hydroxy-3-oxochol-24-oyl-CoA Low 0.001
    Thryve C21471 7alpha-Hydroxy-3-oxochol-4-en-24-oyl-CoA High 0.001
    Thryve C21911 7beta-Hydroxy-3-oxochol-24-oyl-CoA Low 0.001
    Thryve C21912 7beta-Hydroxy-3-oxochol-4-en-24-oyl-CoA High 0.001
    Thryve C19968 8-Oxo-dGMP High 0.001
    uBiome C19968 8-Oxo-dGMP High 0.001
    Thryve C19967 8-Oxo-dGTP Low 0.001
    BiomeSight C19764 9,15,9'-tricis-zeta-Carotene Low 0.0001
    Thryve C21156 Acarbose 7IV-phosphate Low 0.0001
    Thryve C22382 Aceneuramate Low 0.001
    BiomeSight C03939 Acetyl-[acyl-carrier protein] Low 0.0001
    uBiome C00024 Acetyl-CoA Low 0.001
    uBiome C00173 Acyl-[acyl-carrier protein] Low 0.001
    Thryve C03372 Acylglycerone phosphate Low 0.001
    uBiome C00147 Adenine High 0.001
    uBiome C06508 Adenosyl cobinamide Low 0.001
    Thryve C21153 Adenosylcobalamin 5'-phosphate Low 0.0001
    BiomeSight C01299 Adenylyl-[L-glutamate:ammonia ligase (ADP-forming)] Low 0.0001
    Thryve C01299 Adenylyl-[L-glutamate:ammonia ligase (ADP-forming)] Low 0.0001
    uBiome C01299 Adenylyl-[L-glutamate:ammonia ligase (ADP-forming)] Low 0.0001
    uBiome C00008 ADP High 0.001
    BiomeSight C03245 ADP-D-ribosyl-acceptor Low 0.0001
    Thryve C03245 ADP-D-ribosyl-acceptor Low 0.0001
    BiomeSight C01401 Alanine Low 0.0001
    Thryve C00069 Alcohol High 0.001
    BiomeSight C00071 Aldehyde High 0.001
    BiomeSight C04145 all-trans-Nonaprenyl diphosphate Low 0.0001
    BiomeSight C05414 all-trans-Phytofluene Low 0.0001
    Thryve C05414 all-trans-Phytofluene Low 0.0001
    uBiome C05414 all-trans-Phytofluene Low 0.0001
    uBiome C05847 all-trans-Polyprenyl diphosphate Low 0.0001
    BiomeSight C05430 all-trans-zeta-Carotene Low 0.0001
    Thryve C05430 all-trans-zeta-Carotene Low 0.0001
    uBiome C05430 all-trans-zeta-Carotene Low 0.0001
    Thryve C00984 alpha-D-Galactose Low 0.0001
    Thryve C01235 alpha-D-Galactosyl-(1->3)-1D-myo-inositol High 0.0001
    uBiome C00668 alpha-D-Glucose 6-phosphate Low 0.001
    Thryve C00936 alpha-D-Mannose High 0.0001
    BiomeSight C21780 alpha-D-Mannosyl-(1->3)-N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,octacis-undecaprenol Low 0.0001
    Thryve C21780 alpha-D-Mannosyl-(1->3)-N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,octacis-undecaprenol Low 0.0001
    BiomeSight C20423 alpha-D-Ribose 1-methylphosphonate 5-phosphate Low 0.0001
    uBiome C20423 alpha-D-Ribose 1-methylphosphonate 5-phosphate Low 0.001
    uBiome C20422 alpha-D-Ribose 1-methylphosphonate 5-triphosphate Low 0.0001
    uBiome C02504 alpha-Isopropylmalate High 0.001
    BiomeSight C19875 alpha-Kdo-(2->8)-alpha-Kdo-(2->4)-alpha-Kdo-(2->6)-lipid IVA Low 0.0001
    Thryve C19875 alpha-Kdo-(2->8)-alpha-Kdo-(2->4)-alpha-Kdo-(2->6)-lipid IVA Low 0.0001
    uBiome C19875 alpha-Kdo-(2->8)-alpha-Kdo-(2->4)-alpha-Kdo-(2->6)-lipid IVA Low 0.0001
    Thryve C05775 alpha-Ribazole High 0.0001
    Thryve C03373 Aminoimidazole ribotide Low 0.0001
    uBiome C00014 Ammonia High 0.001
    uBiome C00020 AMP High 0.0001
    Thryve C03852 Androstan-3alpha,17beta-diol High 0.0001
    uBiome C00108 Anthranilate High 0.001
    BiomeSight C02247 Anthraniloyl-CoA Low 0.0001
    BiomeSight C21213 Archaeal dolichyl 3-O-(2,3-diacetamido-2,3-dideoxy-beta-D-glucuronsyl)-N-acetyl-alpha-D-glucosaminyl phosphate Low 0.0001
    BiomeSight C00193 Aromatic aldehyde Low 0.0001
    Thryve C00072 Ascorbate Low 0.001
    uBiome C00002 ATP Low 0.0001
    BiomeSight C00701 Base Low 0.0001
    uBiome C00701 Base Low 0.0001
    Thryve C21454 beta-1,2-Mannotriose Low 0.0001
    BiomeSight C08591 beta-Cryptoxanthin Low 0.0001
    Thryve C08591 beta-Cryptoxanthin Low 0.0001
    Thryve C05345 beta-D-Fructose 6-phosphate Low 0.0001
    Thryve C01311 beta-D-Galactosyl-(1->4)-[alpha-L-fucosyl-(1->3)]-N-acetyl-D-glucosaminyl-R Low 0.001
    uBiome C00221 beta-D-Glucose High 0.001
    Thryve C00663 beta-D-Glucose 1-phosphate Low 0.001
    BiomeSight C07345 Betaine aldehyde hydrate Low 0.0001
    Thryve C20569 beta-L-Arabinofuranose Low 0.0001
    Thryve C18046 Biotinyl-[protein] High 0.0001
    BiomeSight C01563 Carbamate Low 0.0001
    Thryve C01563 Carbamate Low 0.0001
    uBiome C01563 Carbamate Low 0.0001
    Thryve C00169 Carbamoyl phosphate Low 0.0001
    Thryve C18047 Carboxybiotinyl-[protein] Low 0.0001
    Thryve C18174 Carboxynorspermidine Low 0.0001
    BiomeSight C20969 Carboxyphosphate Low 0.0001
    Thryve C20969 Carboxyphosphate Low 0.0001
    uBiome C20969 Carboxyphosphate Low 0.0001
    Thryve C18172 Carboxyspermidine Low 0.0001
    Thryve C00307 CDP-choline Low 0.0001
    BiomeSight C00501 CDP-glucose Low 0.0001
    uBiome C00501 CDP-glucose Low 0.001
    BiomeSight C05306 Chlorophyll a Low 0.0001
    Thryve C06571 Chlortetracycline Low 0.0001
    Thryve C00114 Choline High 0.001
    Thryve C00588 Choline phosphate High 0.0001
    Thryve C00919 Choline sulfate Low 0.001
    Thryve C01794 Choloyl-CoA High 0.001
    BiomeSight C21657 cis-3-Alkyl-4-alkyloxetan-2-one Low 0.0001
    Thryve C21657 cis-3-Alkyl-4-alkyloxetan-2-one Low 0.0001
    BiomeSight C04431 cis-4-Carboxymethylenebut-2-en-4-olide High 0.001
    Thryve C03440 cis-4-Hydroxy-D-proline Low 0.001
    BiomeSight C00417 cis-Aconitate Low 0.0001
    Thryve C00417 cis-Aconitate Low 0.0001
    uBiome C00417 cis-Aconitate Low 0.0001
    Thryve C01064 CMP-N-acylneuraminate High 0.001
    uBiome C00011 CO2 High 0.001
    BiomeSight C19724 Cobyrinate c-monamide Low 0.0001
    Thryve C19724 Cobyrinate c-monamide Low 0.0001
    uBiome C19724 Cobyrinate c-monamide Low 0.0001
    BiomeSight C19152 Coenzyme F420-1 Low 0.0001
    Thryve C19152 Coenzyme F420-1 Low 0.0001
    Thryve C03103 Cyclobutadipyrimidine Low 0.001
    Thryve C22031 Cytidine 5'-diphosphoramidate High 0.001
    Thryve C22218 D-Apionolactone Low 0.0001
    uBiome C00705 dCDP High 0.001
    BiomeSight C02218 Dehydroalanine Low 0.0001
    Thryve C02218 Dehydroalanine Low 0.0001
    uBiome C02218 Dehydroalanine Low 0.0001
    BiomeSight C15853 Dehydrospermidine Low 0.0001
    Thryve C15853 Dehydrospermidine Low 0.0001
    uBiome C15853 Dehydrospermidine Low 0.0001
    uBiome C17010 Dehypoxanthine futalosine Low 0.001
    BiomeSight C04092 Delta1-Piperideine-2-carboxylate Low 0.001
    BiomeSight C21084 Demethylphylloquinol Low 0.0001
    uBiome C04666 D-erythro-1-(Imidazol-4-yl)glycerol 3-phosphate Low 0.0001
    uBiome C00085 D-Fructose 6-phosphate High 0.001
    Thryve C00198 D-Glucono-1,5-lactone High 0.001
    Thryve C00329 D-Glucosamine High 0.0001
    BiomeSight C00092 D-Glucose 6-phosphate Low 0.0001
    Thryve C00738 D-Hexose Low 0.001
    Thryve C02965 D-Hexose 6-phosphate High 0.001
    BiomeSight C02146 Dialkyl ketone Low 0.001
    BiomeSight C02273 Digalacturonate Low 0.001
    BiomeSight C06040 Diglucosyldiacylglycerol Low 0.0001
    Thryve C06040 Diglucosyldiacylglycerol Low 0.0001
    uBiome C06040 Diglucosyldiacylglycerol Low 0.0001
    uBiome C05196 Dihydroflavodoxin Low 0.001
    uBiome C00415 Dihydrofolate High 0.001
    Thryve C00921 Dihydropteroate Low 0.001
    Thryve C03917 Dihydrotestosterone Low 0.0001
    uBiome C00235 Dimethylallyl diphosphate Low 0.001
    uBiome C00013 Diphosphate High 0.0001
    uBiome C01345 dITP Low 0.0001
    uBiome C03391 DNA 6-methylaminopurine High 0.001
    uBiome C00821 DNA adenine Low 0.001
    uBiome C04250 DNA containing 6-O-methylguanine Low 0.001
    BiomeSight C01246 Dolichyl beta-D-glucosyl phosphate Low 0.001
    Thryve C00822 Dopaquinone Low 0.0001
    Thryve C00515 D-Ornithine Low 0.001
    uBiome C00515 D-Ornithine Low 0.0001
    uBiome C00740 D-Serine High 0.001
    Thryve C00558 D-Tagaturonate High 0.001
    BiomeSight C11930 dTDP-2,6-dideoxy-D-glycero-hex-2-enos-4-ulose Low 0.0001
    Thryve C11930 dTDP-2,6-dideoxy-D-glycero-hex-2-enos-4-ulose Low 0.0001
    uBiome C11930 dTDP-2,6-dideoxy-D-glycero-hex-2-enos-4-ulose Low 0.0001
    Thryve C00688 dTDP-4-dehydro-beta-L-rhamnose High 0.001
    uBiome C00688 dTDP-4-dehydro-beta-L-rhamnose High 0.001
    Thryve C11907 dTDP-4-oxo-6-deoxy-D-glucose Low 0.001
    uBiome C03319 dTDP-L-rhamnose Low 0.001
    Thryve C00365 dUMP High 0.0001
    Thryve C00502 D-Xylonate Low 0.001
    uBiome C00231 D-Xylulose 5-phosphate High 0.001
    BiomeSight C05359 e- Low 0.0001
    Thryve C05359 e- Low 0.0001
    uBiome C05359 e- Low 0.0001
    Thryve C22297 Enolpyruvoyl-2-diphospho-5'-guanosine Low 0.0001
    Thryve C01352 FADH2 Low 0.0001
    Thryve C02682 Ferricytochrome c3 High 0.001
    Thryve C02684 Ferrocytochrome c3 Low 0.001
    uBiome C05199 Flavodoxin semiquinone High 0.001
    Thryve C22057 Flavuxanthin Low 0.0001
    BiomeSight C22238 FMN-N5-oxide Low 0.0001
    Thryve C22238 FMN-N5-oxide Low 0.0001
    BiomeSight C22379 FMN-N5-peroxide Low 0.0001
    Thryve C22379 FMN-N5-peroxide Low 0.0001
    uBiome C03479 Folinic acid Low 0.001
    Thryve C00488 Formamide High 0.001
    uBiome C11439 Formyl-L-methionyl peptide Low 0.001
    Thryve C16488 Fructoselysine Low 0.001
    BiomeSight C00669 gamma-L-Glutamyl-L-cysteine Low 0.001
    Thryve C15699 gamma-L-Glutamylputrescine High 0.001
    uBiome C00035 GDP High 0.001
    Thryve C00325 GDP-L-fucose High 0.0001
    BiomeSight C21217 Geranylgeranyl bacteriochlorophyllide a Low 0.0001
    uBiome C00127 Glutathione disulfide High 0.001
    BiomeSight C05730 Glutathionylspermidine Low 0.0001
    Thryve C05730 Glutathionylspermidine Low 0.0001
    uBiome C05730 Glutathionylspermidine Low 0.0001
    Thryve C00184 Glycerone High 0.001
    Thryve C22157 Glycine cleavage system H High 0.001
    uBiome C00266 Glycolaldehyde High 0.001
    Thryve C22361 Glycyl-AMP Low 0.0001
    uBiome C02412 Glycyl-tRNA(Gly) High 0.001
    uBiome C00044 GTP Low 0.0001
    Thryve C01228 Guanosine 3',5'-bis(diphosphate) Low 0.001
    Thryve C04494 Guanosine 3'-diphosphate 5'-triphosphate High 0.001
    uBiome C04494 Guanosine 3'-diphosphate 5'-triphosphate High 0.001
    uBiome C00080 H+ High 0.001
    BiomeSight C22173 Harderoheme III Low 0.0001
    Thryve C22173 Harderoheme III Low 0.0001
    uBiome C22173 Harderoheme III Low 0.0001
    uBiome C00288 HCO3- Low 0.001
    Thryve C16520 Hexadecenoyl-[acyl-carrier protein] Low 0.0001
    Thryve C01586 Hippurate Low 0.001
    uBiome C15603 Hydroquinone High 0.001
    Thryve C16849 Hydroxypyruvaldehyde phosphate High 0.001
    Thryve C00168 Hydroxypyruvate High 0.0001
    BiomeSight C21026 Iminoarginine Low 0.0001
    Thryve C21026 Iminoarginine Low 0.0001
    BiomeSight C05840 Iminoaspartate Low 0.001
    uBiome C05840 Iminoaspartate Low 0.0001
    uBiome C00130 IMP Low 0.001
    uBiome C00129 Isopentenyl diphosphate Low 0.0001
    uBiome C00081 ITP Low 0.001
    BiomeSight C15556 L-3,4-Dihydroxybutan-2-one 4-phosphate Low 0.0001
    Thryve C00041 L-Alanine Low 0.001
    uBiome C00886 L-Alanyl-tRNA High 0.001
    uBiome C02163 L-Arginyl-tRNA(Arg) High 0.001
    Thryve C16186 L-Ascorbate 6-phosphate High 0.001
    uBiome C02984 L-Aspartyl-tRNA(Asp) High 0.001
    uBiome C00097 L-Cysteine Low 0.001
    uBiome C02882 L-Cysteine-S-conjugate Low 0.001
    uBiome C03125 L-Cysteinyl-tRNA(Cys) High 0.001
    BiomeSight C02985 L-Fucose 1-phosphate Low 0.0001
    Thryve C02985 L-Fucose 1-phosphate Low 0.0001
    uBiome C02985 L-Fucose 1-phosphate Low 0.0001
    uBiome C00025 L-Glutamate High 0.001
    uBiome C00064 L-Glutamine Low 0.001
    uBiome C01100 L-Histidinol phosphate Low 0.001
    uBiome C02988 L-Histidyl-tRNA(His) High 0.001
    uBiome C00155 L-Homocysteine Low 0.001
    Thryve C19777 L-Homoserine lactone Low 0.0001
    Thryve C00770 L-Idonate Low 0.001
    Thryve C19884 Lipid IIA High 0.001
    uBiome C04824 Lipid X Low 0.0001
    Thryve C00338 Lipopolysaccharide Low 0.001
    BiomeSight C16238 Lipoyl-AMP Low 0.0001
    Thryve C16238 Lipoyl-AMP Low 0.0001
    uBiome C16238 Lipoyl-AMP Low 0.0001
    uBiome C00407 L-Isoleucine Low 0.001
    uBiome C03127 L-Isoleucyl-tRNA(Ile) High 0.001
    uBiome C00123 L-Leucine Low 0.001
    uBiome C00047 L-Lysine Low 0.001
    uBiome C01931 L-Lysyl-tRNA High 0.001
    Thryve C02430 L-Methionyl-tRNA High 0.0001
    uBiome C02430 L-Methionyl-tRNA High 0.001
    Thryve C00339 Long-chain alcohol Low 0.001
    uBiome C00079 L-Phenylalanine Low 0.001
    uBiome C03511 L-Phenylalanyl-tRNA(Phe) High 0.001
    uBiome C00148 L-Proline Low 0.001
    uBiome C02702 L-Prolyl-tRNA(Pro) High 0.001
    Thryve C01934 L-Rhamnonate Low 0.001
    uBiome C00065 L-Serine Low 0.001
    uBiome C02553 L-Seryl-tRNA(Ser) High 0.001
    uBiome C02992 L-Threonyl-tRNA(Thr) High 0.001
    uBiome C00082 L-Tyrosine Low 0.001
    uBiome C02839 L-Tyrosyl-tRNA(Tyr) High 0.001
    uBiome C02554 L-Valyl-tRNA(Val) High 0.001
    Thryve C00312 L-Xylulose Low 0.001
    Thryve C00083 Malonyl-CoA High 0.0001
    uBiome C00208 Maltose Low 0.001
    Thryve C19610 Manganese(2+) High 0.001
    BiomeSight C19611 Manganese(3+) Low 0.0001
    Thryve C19611 Manganese(3+) Low 0.0001
    uBiome C19611 Manganese(3+) Low 0.0001
    Thryve C00392 Mannitol Low 0.001
    uBiome C11440 Methionyl peptide High 0.001
    Thryve C04204 N-(2,3-Dihydroxybenzoyl)-L-serine High 0.001
    BiomeSight C15854 N-(4-Aminobutylidene)-[eIF5A-precursor]-lysine Low 0.0001
    Thryve C15854 N-(4-Aminobutylidene)-[eIF5A-precursor]-lysine Low 0.0001
    uBiome C15854 N-(4-Aminobutylidene)-[eIF5A-precursor]-lysine Low 0.0001
    BiomeSight C06442 N(gamma)-Acetyldiaminobutyrate Low 0.0001
    Thryve C06442 N(gamma)-Acetyldiaminobutyrate Low 0.0001
    BiomeSight C03406 N-(L-Arginino)succinate Low 0.0001
    Thryve C03406 N-(L-Arginino)succinate Low 0.0001
    uBiome C03406 N-(L-Arginino)succinate Low 0.0001
    BiomeSight C05933 N(omega)-Hydroxyarginine Low 0.0001
    Thryve C01026 N,N-Dimethylglycine High 0.0001
    Thryve C04259 N,N-Dimethylhistidine Low 0.0001
    Thryve C20333 N2-Citryl-N6-acetyl-N6-hydroxy-L-lysine Low 0.0001
    BiomeSight C03296 N2-Succinyl-L-arginine Low 0.0001
    Thryve C03296 N2-Succinyl-L-arginine Low 0.0001
    Thryve C03297 N3-Acetylgentamicin C Low 0.0001
    BiomeSight C21009 N4-Aminopropylspermidine Low 0.0001
    Thryve C21009 N4-Aminopropylspermidine Low 0.0001
    uBiome C21009 N4-Aminopropylspermidine Low 0.0001
    BiomeSight C20850 N5-Hydroxy-L-ornithine Low 0.0001
    BiomeSight C03794 N6-(1,2-Dicarboxyethyl)-AMP Low 0.0001
    Thryve C03794 N6-(1,2-Dicarboxyethyl)-AMP Low 0.0001
    uBiome C03794 N6-(1,2-Dicarboxyethyl)-AMP Low 0.0001
    BiomeSight C01028 N6-Hydroxy-L-lysine Low 0.0001
    Thryve C01028 N6-Hydroxy-L-lysine Low 0.0001
    uBiome C20751 N6-L-Threonylcarbamoyladenine in tRNA High 0.001
    BiomeSight C18060 N-Acetyl-alpha-D-galactosamine 1-phosphate Low 0.0001
    Thryve C18060 N-Acetyl-alpha-D-galactosamine 1-phosphate Low 0.0001
    uBiome C18060 N-Acetyl-alpha-D-galactosamine 1-phosphate Low 0.0001
    Thryve C20620 N-Acetyl-alpha-D-galactosaminyl-diphospho-ditrans,octacis-undecaprenol High 0.001
    Thryve C18055 N-Acetyl-alpha-D-hexosamine 1-phosphate Low 0.0001
    Thryve C01289 N-Acetyl-D-glucosaminyldiphosphoundecaprenol Low 0.001
    Thryve C03136 N-Acetyl-D-hexosamine High 0.001
    Thryve C00645 N-Acetyl-D-mannosamine High 0.001
    Thryve C02713 N-Acetylmuramate Low 0.0001
    Thryve C00591 N-Acylneuraminate Low 0.001
    uBiome C00003 NAD+ Low 0.001
    uBiome C00004 NADH High 0.001
    uBiome C00006 NADP+ Low 0.001
    uBiome C00005 NADPH High 0.001
    uBiome C00438 N-Carbamoyl-L-aspartate High 0.001
    Thryve C15586 N-D-Ribosylpurine Low 0.0001
    BiomeSight C01045 N-Formyl-L-glutamate Low 0.001
    Thryve C00253 Nicotinate Low 0.001
    Thryve C22056 Nonaflavuxanthin Low 0.0001
    uBiome C03523 N-Substituted amino acid High 0.001
    Thryve C03880 N-Substituted aminoacyl-tRNA Low 0.001
    uBiome C03880 N-Substituted aminoacyl-tRNA Low 0.001
    BiomeSight C05931 N-Succinyl-L-glutamate Low 0.0001
    Thryve C05931 N-Succinyl-L-glutamate Low 0.0001
    Thryve C01075 N-Sulfo-D-glucosamine Low 0.0001
    uBiome C21158 Nucleoside 3',5'-bisphosphate Low 0.001
    uBiome C01117 Nucleoside 5'-phosphate High 0.001
    Thryve C06055 O-Phospho-4-hydroxy-L-threonine Low 0.0001
    uBiome C02532 O-Phospho-D-serine Low 0.001
    uBiome C00295 Orotate High 0.001
    uBiome C01103 Orotidine 5'-phosphate Low 0.0001
    uBiome C00009 Orthophosphate High 0.0001
    BiomeSight C05379 Oxalosuccinate Low 0.0001
    Thryve C05379 Oxalosuccinate Low 0.0001
    uBiome C05379 Oxalosuccinate Low 0.0001
    uBiome C22151 Oxidized [2Fe-2S] ferredoxin High 0.001
    Thryve C01134 Pantetheine 4'-phosphate Low 0.001
    Thryve C00864 Pantothenate Low 0.001
    Thryve C19842 Peptidoglycan-D-glucosamine High 0.0001
    uBiome C03633 Peptidylproline (omega=0) High 0.001
    uBiome C03798 Peptidylproline (omega=180) Low 0.001
    Thryve C00601 Phenylacetaldehyde Low 0.001
    uBiome C00166 Phenylpyruvate High 0.001
    uBiome C00416 Phosphatidate High 0.001
    BiomeSight C01241 Phosphatidyl-N-methylethanolamine Low 0.0001
    Thryve C01241 Phosphatidyl-N-methylethanolamine Low 0.0001
    uBiome C01241 Phosphatidyl-N-methylethanolamine Low 0.0001
    uBiome C00562 Phosphoprotein High 0.001
    BiomeSight C17467 p-Hydroxybenzyl alcohol Low 0.0001
    BiomeSight C03313 Phylloquinol Low 0.001
    uBiome C19845 Pimeloyl-[acyl-carrier protein] Low 0.001
    BiomeSight C22398 Poly[(R)-3-hydroxyalkanoate]n Low 0.0001
    Thryve C22398 Poly[(R)-3-hydroxyalkanoate]n Low 0.0001
    BiomeSight C00404 Polyphosphate Low 0.0001
    Thryve C00404 Polyphosphate Low 0.0001
    uBiome C00404 Polyphosphate Low 0.0001
    BiomeSight C15527 Precorrin 1 Low 0.0001
    Thryve C15527 Precorrin 1 Low 0.0001
    uBiome C15527 Precorrin 1 Low 0.0001
    BiomeSight C03427 Prephytoene diphosphate Low 0.0001
    Thryve C03427 Prephytoene diphosphate Low 0.0001
    uBiome C03427 Prephytoene diphosphate Low 0.0001
    BiomeSight C03428 Presqualene diphosphate Low 0.0001
    uBiome C03428 Presqualene diphosphate Low 0.0001
    BiomeSight C04398 Procollagen trans-4-hydroxy-L-proline Low 0.0001
    BiomeSight C21177 Prokaryotic ubiquitin-like protein Low 0.0001
    Thryve C21177 Prokaryotic ubiquitin-like protein Low 0.0001
    uBiome C21177 Prokaryotic ubiquitin-like protein Low 0.0001
    uBiome C00479 Propanal Low 0.001
    Thryve C02457 Propane-1,3-diol High 0.0001
    uBiome C00017 Protein Low 0.001
    Thryve C00614 Protein glutamate Low 0.001
    uBiome C04142 Protein glutamate methyl ester Low 0.0001
    Thryve C03306 Protein L-isoaspartate Low 0.001
    Thryve C04311 Protein L-isoaspartate methyl ester High 0.001
    uBiome C03800 Protein S-methyl-L-cysteine High 0.001
    uBiome C00585 Protein tyrosine High 0.001
    uBiome C01167 Protein tyrosine phosphate Low 0.001
    Thryve C01079 Protoporphyrinogen IX High 0.001
    Thryve C21616 Psicoselysine High 0.001
    Thryve C15587 Purine High 0.0001
    Thryve C20463 Purine deoxyribonucleoside Low 0.0001
    BiomeSight C21851 Pyridinium-3,5-biscarboxylic acid mononucleotide Low 0.0001
    BiomeSight C21878 Pyridinium-3-carboxy-5-thiocarboxylic acid mononucleotide Low 0.0001
    Thryve C21878 Pyridinium-3-carboxy-5-thiocarboxylic acid mononucleotide Low 0.0001
    uBiome C21878 Pyridinium-3-carboxy-5-thiocarboxylic acid mononucleotide Low 0.0001
    Thryve C00396 Pyrimidine High 0.001
    Thryve C03169 Pyrimidine nucleoside Low 0.001
    uBiome C00022 Pyruvate High 0.001
    uBiome C15602 Quinone Low 0.001
    BiomeSight C00492 Raffinose Low 0.001
    Thryve C00492 Raffinose Low 0.0001
    Thryve C21299 RCH2NHR' Low 0.001
    uBiome C22150 Reduced [2Fe-2S] ferredoxin Low 0.001
    Thryve C01007 Reduced riboflavin Low 0.001
    BiomeSight C01751 Resorcinol Low 0.0001
    uBiome C03723 Ribonucleoside diphosphate High 0.001
    uBiome C03802 Ribonucleoside triphosphate Low 0.001
    Thryve C21300 R'NH2 High 0.001
    uBiome C01335 ROH High 0.001
    uBiome C15498 ROOH Low 0.001
    Thryve C02320 R-S-Glutathione High 0.001
    Thryve C01322 RX Low 0.001
    Thryve C20994 S-(Hercyn-2-yl)-L-cysteine S-oxide Low 0.0001
    BiomeSight C14180 S-(Hydroxymethyl)glutathione High 0.0001
    uBiome C00021 S-Adenosyl-L-homocysteine High 0.001
    uBiome C00019 S-Adenosyl-L-methionine Low 0.001
    uBiome C01031 S-Formylglutathione Low 0.0001
    BiomeSight C06718 S-Formylmycothiol Low 0.001
    uBiome C00493 Shikimate Low 0.001
    Thryve C00623 sn-Glycerol 1-phosphate High 0.0001
    Thryve C01096 Sorbitol 6-phosphate Low 0.001
    Thryve C00315 Spermidine High 0.001
    BiomeSight C00319 Sphingosine High 0.001
    BiomeSight C05727 S-Substituted N-acetyl-L-cysteine High 0.001
    BiomeSight C21787 S-Sulfinatoglutathione Low 0.0001
    Thryve C21787 S-Sulfinatoglutathione Low 0.0001
    Thryve C00042 Succinate Low 0.001
    BiomeSight C02591 Sucrose 6'-phosphate Low 0.0001
    Thryve C11477 Sugar High 0.001
    Thryve C00934 Sugar phosphate Low 0.001
    Thryve C06125 Sulfatide Low 0.001
    Thryve C00087 Sulfur Low 0.001
    uBiome C15810 Sulfur-carrier protein High 0.001
    Thryve C06570 Tetracycline High 0.0001
    Thryve C20276 Tetraprenyl-beta-curcumene Low 0.0001
    BiomeSight C03541 THF-polyglutamate Low 0.0001
    Thryve C03541 THF-polyglutamate Low 0.0001
    uBiome C03541 THF-polyglutamate Low 0.0001
    uBiome C15814 Thiocarboxy-[sulfur-carrier protein] Low 0.0001
    uBiome C00145 Thiol High 0.001
    Thryve C01756 Thiopurine High 0.001
    Thryve C11511 threo-3-Hydroxy-L-aspartate High 0.0001
    BiomeSight C20368 trans,octacis-Decaprenylphospho-beta-D-ribofuranose Low 0.001
    Thryve C12621 trans-3-Hydroxycinnamate Low 0.001
    Thryve C22182 Triglucosyl-enterobactin Low 0.0001
    BiomeSight C19852 tritrans,heptacis-Undecaprenyl diphosphate Low 0.001
    uBiome C00066 tRNA High 0.001
    uBiome C17324 tRNA adenine Low 0.001
    BiomeSight C19080 tRNA with a 3' CC end Low 0.0001
    Thryve C19080 tRNA with a 3' CC end Low 0.0001
    uBiome C19080 tRNA with a 3' CC end Low 0.0001
    uBiome C01636 tRNA(Arg) Low 0.001
    Thryve C01637 tRNA(Asn) Low 0.001
    uBiome C01638 tRNA(Asp) Low 0.001
    uBiome C01639 tRNA(Cys) Low 0.001
    uBiome C01642 tRNA(Gly) Low 0.001
    uBiome C01643 tRNA(His) Low 0.001
    uBiome C01644 tRNA(Ile) Low 0.001
    uBiome C01646 tRNA(Lys) Low 0.001
    Thryve C01647 tRNA(Met) Low 0.0001
    uBiome C01647 tRNA(Met) Low 0.001
    uBiome C01648 tRNA(Phe) Low 0.001
    uBiome C01649 tRNA(Pro) Low 0.001
    uBiome C01650 tRNA(Ser) Low 0.001
    uBiome C01651 tRNA(Thr) Low 0.001
    uBiome C01652 tRNA(Trp) Low 0.001
    uBiome C00787 tRNA(Tyr) Low 0.001
    uBiome C01653 tRNA(Val) Low 0.001
    uBiome C00015 UDP High 0.001
    BiomeSight C20849 UDP-2-acetamido-3-dehydro-2-deoxy-alpha-D-glucopyranose Low 0.0001
    BiomeSight C22409 UDP-3-O-[(3R)-3-hydroxyacyl]-alpha-D-glucosamine Low 0.0001
    Thryve C22409 UDP-3-O-[(3R)-3-hydroxyacyl]-alpha-D-glucosamine Low 0.0001
    uBiome C22409 UDP-3-O-[(3R)-3-hydroxyacyl]-alpha-D-glucosamine Low 0.0001
    Thryve C00617 UDP-D-galacturonate High 0.001
    uBiome C00029 UDP-glucose Low 0.001
    BiomeSight C16154 UDP-L-Ara4FN Low 0.0001
    Thryve C16154 UDP-L-Ara4FN Low 0.001
    uBiome C04702 UDPMurNAc(oyl-L-Ala-D-gamma-Glu-L-Lys-D-Ala-D-Ala) High 0.001
    uBiome C04631 UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine High 0.001
    BiomeSight C22053 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L-glutamate Low 0.0001
    BiomeSight C01212 UDP-N-acetylmuramoyl-L-alanine Low 0.001
    uBiome C01212 UDP-N-acetylmuramoyl-L-alanine Low 0.001
    Thryve C05892 UDP-N-acetylmuramoyl-L-alanyl-gamma-D-glutamyl-L-lysine Low 0.0001
    uBiome C05892 UDP-N-acetylmuramoyl-L-alanyl-gamma-D-glutamyl-L-lysine Low 0.0001
    Thryve C05893 Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-gamma-D-glutamyl-L-lysyl-D-alanyl-D-alanine Low 0.001
    uBiome C05893 Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-gamma-D-glutamyl-L-lysyl-D-alanyl-D-alanine Low 0.001
    uBiome C00106 Uracil High 0.001
    Thryve C00299 Uridine Low 0.0001
    uBiome C00001 Water Low 0.001
    uBiome C00700 XTP Low 0.001

    Probiotics modeled on Enzymes

    All of the species listed below are available in some retail probiotics, somewhere in the world. They may not be available in your country.

    We focus on those producing low levels of enzymes

    ProbioticWeight
    Pseudomonas fluorescens 1863
    Pseudomonas putida 1761.2
    Azospirillum lipoferum 1555.8
    Rhodococcus rhodochrous 1458.1
    Streptomyces venezuelae 1407.8
    Escherichia coli 1346.8
    Pimelobacter simplex 1279.6
    Priestia megaterium 1201.7
    Bacillus thuringiensis 1178.2
    Azospirillum brasilense 1172.1
    Azotobacter chroococcum 1154.4
    Cereibacter sphaeroides 1127.1
    Streptomyces fradiae 1115.7
    Azotobacter vinelandii 1110.8
    Paenibacillus polymyxa 1041.3
    Peribacillus simplex 1024.7
    Bacillus subtilis 1021.2
    Bacillus amyloliquefaciens 1002.3
    Bacillus velezensis 984.7
    Brevibacillus brevis 976.7
    Bacillus subtilis subsp. natto 973
    Bacillus licheniformis 934.6
    Hafnia alvei 923.1
    Corynebacterium stationis 909.7
    Cellulosimicrobium cellulans 905.8
    Acinetobacter calcoaceticus 902.5
    Cellulomonas fimi 894.6
    Rhodospirillum rubrum 888
    Arthrobacter citreus 880.5
    Bacillus pumilus 864.7
    Brevibacillus laterosporus 814.5
    Shouchella clausii 784.7
    Heyndrickxia oleronia 780.7
    Lentibacillus amyloliquefaciens 770.7
    Arthrobacter agilis 768.5
    Alkalihalophilus pseudofirmus 762.1
    Heyndrickxia coagulans 715.2
    Micrococcus luteus 710.5
    Kurthia zopfii 550.4
    Clostridium beijerinckii 547.3
    Limosilactobacillus reuteri 424
    Lentilactobacillus buchneri 419.2
    Lactiplantibacillus plantarum 401.8
    Lactiplantibacillus pentosus 371.1
    Clostridium butyricum 361.7
    Levilactobacillus brevis 347.2
    Faecalibacterium prausnitzii 346
    Lactiplantibacillus argentoratensis 345.9
    Lentilactobacillus kefiri 339.8
    Leuconostoc mesenteroides 333.7
    Pediococcus acidilactici 328.2
    Limosilactobacillus fermentum 327.4
    Lacticaseibacillus paracasei 323.8
    Bifidobacterium longum subsp. infantis 317.8
    Enterococcus faecalis 313.7
    Bifidobacterium breve 308.4
    Lacticaseibacillus rhamnosus 307
    Veillonella atypica 299.3
    Bifidobacterium longum 299
    Bifidobacterium animalis subsp. lactis 295.2
    Bifidobacterium animalis 295.2
    Lacticaseibacillus casei 293
    Lactococcus cremoris 292.6
    Bifidobacterium longum subsp. longum 289.4
    Pediococcus pentosaceus 274
    Enterococcus faecium 269
    Bifidobacterium adolescentis 266.6
    Ligilactobacillus salivarius 263.5
    Bifidobacterium pseudocatenulatum 260.9
    Bifidobacterium catenulatum 260.9
    Lactobacillus kefiranofaciens 252.1
    Anaerobutyricum hallii 251.6
    Lactococcus lactis 249.6
    Bifidobacterium bifidum 246
    Streptococcus thermophilus 232.5
    Oxalobacter formigenes 229.3
    Blautia hansenii 228.3
    Lactobacillus delbrueckii subsp. bulgaricus 222.5
    Lactobacillus acidophilus 220.7
    Enterococcus durans 217.3
    Leuconostoc lactis 217.2
    Lactobacillus helveticus 214
    Lactobacillus jensenii 207.8
    Bifidobacterium pseudolongum 203.9
    Lactobacillus crispatus 197.4
    Lactobacillus johnsonii 182.3
    Lactobacillus gasseri 172.7
    Christensenella minuta 163
    Akkermansia muciniphila 123.6

    Probiotics modeled on Bacteria Shifts and PubMed Studies

    A lot of the probiotics above have not been studies in isolation. This reduces the number of probiotics considered.

    ProbioticWeight
    Lactobacillus plantarum {L. plantarum} 231.80861973056543
    Lacticaseibacillus paracasei {L.paracasei} 142.87008811974047
    bifidobacterium longum {B.Longum } 137.76870810464658
    Bifidobacterium breve {B. breve} 137.335043972294
    Saccharomyces cerevisiae var boulardii {S. boulardii} 134.1171681286317
    Streptococcus salivarius subsp. thermophilus {S. thermophilus} 122.64015378493289
    Latilactobacillus sakei {Lactobacillus sakei} 115.1496845351879
    bifidobacterium lactis,streptococcus thermophilus probiotic 109.51998565412762
    Heyndrickxia coagulans {B. coagulans} 107.16632194206437
    Lactobacillus kefiranofaciens {Kefir Probiotic} 104.13378235225628
    Limosilactobacillus fermentum {L. fermentum} 98.34773656238737
    bacillus 92.62740649261643
    bifidobacterium infantis {B. infantis} 69.8967639610211
    lactobacillus acidophilus {L. acidophilus} 68.29926427982915
    Bifidobacterium animalis {B. animalis} 67.65384686455647
    Pediococcus pentosaceus {P. pentosaceus} 65.1703212539655
    Lactobacillus gasseri {L.gasseri} 64.48493126238108
    bifidobacterium 58.47276054503297
    Escherichia coli Nissle 1917 {Mutaflor} 52.66382940043641
    Ligilactobacillus salivarius {L. salivarius} 43.48167293552762
    Alkalihalobacillus clausii {Bacillus clausii } 40.70611748203931
    Enterococcus faecium sf 68 {bioflorin} 39.79764803350206
    Lentilactobacillus kefiri {Kefibios} 34.52214846421827
    pediococcus acidilactici {P acidilactici} 32.11070173510087
    enterococcus faecium {E. faecium} 29.771401152604394
    Limosilactobacillus reuteri {L. Reuteri} 28.231420101866934
    Bifidobacterium longum subsp. longum BB536 {BB536} 24.442207433744954
    Lacticaseibacillus paracasei shirota {Yakult} 20.19146908552375
    Lactiplantibacillus pentosus {L. pentosus} 18.941127937094848
    Bacillus pumilus {B. pumilus} 17.037589079249724
    Blautia wexlerae {Blautia wexlerae} 12.945599999999999
    Kluyveromyces marxianus (yeast) 10.757404059874911
    Bacillus amyloliquefaciens {B.amyloliquefaciens } 7.632
    Lentilactobacillus buchneri {Lactobacillus buchneri} 6.333094539676517
    pediococcus acidilactic {RBB9 PEDIOCOCCUS ACIDILACTI} 1.493336757618196
    lactobacillus helveticus {L. helveticus} 1.0684486089923793
    bacillus subtilis natto {B.natto} 0.37118108977579745
    Parabacteroides goldsteinii {Parabacteroides goldsteinii} -1.9583999999999997
    Escherichia coli cryodesiccata {colinfant probiotics} -2.525761385799498
    Lactiplantibacillus argentoratensis {Lactobacillus argentoratensis} -3.801353266049674
    Lactobacillus jensenii {L Jensenii} -3.8199820045014845
    Brevibacillus laterosporus {B. laterosporus } -4.419896618532868
    Lactococcus lactis {Streptococcus lactis} -5.372410165030077
    Bacillus amyloliquefaciens group {B. Amyloliquefaciens} -5.870324446229641
    Escherichia coli:DSM 16441-16448 {symbioflor-2} -6.298204059874911
    Lactobacillus Johnsonii {Lactobacillus Johnsonii} -7.3989172532328045
    Debaryomyces hansenii (yeast) -9.033386064376396
    Blautia hansenii {Streptococcus hansenii} -15.206241256183933
    Bifidobacterium animalis subsp. lactis {B. Lactis} -16.62926608262127
    bifidobacterium pseudocatenulatum {B. pseudocatenulatum } -19.650527456362557
    Lacticaseibacillus rhamnosus {l. rhamnosus} -20.150344389790853
    Faecalibacterium prausnitzii {Faecalibacterium prausnitzii} -21.81871222377317
    Lactobacillus delbrueckii subsp. bulgaricus {L bulgaricus} -23.746287835727696
    Akkermansia muciniphila {Pendulum Probiotic} -24.050241895427117
    Levilactobacillus brevis {L.brevis} -25.798549798875527
    enterococcus durans {Streptococcus durans} -26.581533342373906
    Lacticaseibacillus casei {L. casei} -28.25249089203446
    aspergillus oryzae {koji} -33.62923481012283
    Bacteroides uniformis {Bacteroides uniformis} -40.579305959028694
    Bifidobacterium catenulatum subsp. catenulatum {Bifidobacterium catenulatum} -41.49816533025114
    bacillus licheniformis {b. licheniformis} -42.427457341214506
    Clostridium butyricum MIYAIRI 588 {Miyarisan} -42.544717936345506
    lactobacillus rhamnosus gg -48.05716953981843
    bifidobacterium bifidum {B. bifidum} -49.66876084720085
    Lactobacillus mucosae -58.08051176213965
    bacillus subtilis {B.Subtilis } -61.43675886620555
    bifidobacterium adolescentis {B. adolescentis} -108.15819744239943

    Probiotics modeled on Compounds

    Compound modelling is complex because bacteria consumes compound in general.

    This is shown for completeness -- with great caution about clinical applications

    ProbioticWeight
    Lactobacillus jensenii -148
    Lactobacillus gasseri -161
    Lactobacillus johnsonii -169
    Lactobacillus acidophilus -172
    Pediococcus pentosaceus -173
    Lactobacillus kefiranofaciens -175
    Lactobacillus crispatus -176
    Enterococcus durans -180
    Pediococcus acidilactici -182
    Bifidobacterium pseudolongum -183
    Lacticaseibacillus casei -184
    Bifidobacterium animalis subsp. lactis -184
    Bifidobacterium animalis -187
    Levilactobacillus brevis -187
    Lactobacillus delbrueckii subsp. bulgaricus -191
    Kurthia zopfii -194
    Lactobacillus helveticus -194
    Lacticaseibacillus rhamnosus -194
    Ligilactobacillus salivarius -196
    Bifidobacterium breve -196
    Limosilactobacillus reuteri -197
    Bifidobacterium bifidum -197
    Streptococcus thermophilus -197
    Bifidobacterium pseudocatenulatum -198
    Lentilactobacillus buchneri -198
    Leuconostoc lactis -199
    Bifidobacterium catenulatum -199
    Lactiplantibacillus argentoratensis -200
    Leuconostoc mesenteroides -201
    Bifidobacterium adolescentis -201
    Anaerobutyricum hallii -203
    Bifidobacterium longum subsp. infantis -205
    Enterococcus faecium -205
    Corynebacterium stationis -206
    Bifidobacterium longum -206
    Veillonella atypica -206
    Lacticaseibacillus paracasei -207
    Micrococcus luteus -208
    Lentilactobacillus kefiri -208
    Lactiplantibacillus pentosus -211
    Bifidobacterium longum subsp. longum -211
    Lactiplantibacillus plantarum -213
    Lentibacillus amyloliquefaciens -213
    Lactococcus cremoris -214
    Lactococcus lactis -215
    Alkalihalophilus pseudofirmus -216
    Limosilactobacillus fermentum -216
    Pimelobacter simplex -216
    Arthrobacter agilis -217
    Bacillus licheniformis -218
    Streptomyces fradiae -219
    Enterococcus faecalis -221
    Heyndrickxia oleronia -222
    Christensenella minuta -224
    Oxalobacter formigenes -225
    Blautia hansenii -225
    Heyndrickxia coagulans -226
    Streptomyces venezuelae -227
    Cellulosimicrobium cellulans -230
    Arthrobacter citreus -231
    Cellulomonas fimi -232
    Bacillus amyloliquefaciens -232
    Pseudomonas putida -232
    Faecalibacterium prausnitzii -234
    Peribacillus simplex -234
    Brevibacillus laterosporus -234
    Bacillus velezensis -235
    Brevibacillus brevis -235
    Bacillus subtilis subsp. natto -236
    Azotobacter chroococcum -237
    Bacillus thuringiensis -237
    Bacillus subtilis -237
    Rhodococcus rhodochrous -237
    Acinetobacter calcoaceticus -238
    Shouchella clausii -239
    Bacillus pumilus -239
    Rhodospirillum rubrum -239
    Azotobacter vinelandii -240
    Priestia megaterium -244
    Akkermansia muciniphila -245
    Clostridium butyricum -247
    Azospirillum lipoferum -247
    Azospirillum brasilense -249
    Cereibacter sphaeroides -249
    Clostridium beijerinckii -254
    Paenibacillus polymyxa -257
    Pseudomonas fluorescens -258
    Hafnia alvei -264
    Parabacteroides distasonis -299
    Escherichia coli -302
    Bacteroides uniformis -313

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