AI Engines For more Details: Perplexity Kagi Labs You
Gut Health: HMOs, Holigos, and Stachyose act as prebiotics, promoting the growth of beneficial bacteria in the gut, particularly Bifidobacteria. By nourishing these beneficial bacteria, HMOs and similar prebiotics help establish a healthy gut microbiota in infants, which is essential for digestive health, nutrient absorption, and immune function.
Immune Function: HMOs have been shown to play a crucial role in supporting immune function in infants. They help shape the development of the infant immune system and contribute to the establishment of a healthy gut barrier, which can help protect against infections and inflammatory conditions. Similarly, Holigos and Stachyose may support immune function by promoting the growth of beneficial bacteria in the gut.
Reduced Risk of Infections: HMOs have been associated with a reduced risk of infections, particularly gastrointestinal and respiratory infections, in infants. By promoting the growth of beneficial bacteria and preventing the adhesion of pathogens to the gut epithelium, HMOs may help protect against infectious diseases. Similar effects may be observed with Holigos and Stachyose.
Digestive Disorders: HMOs and similar prebiotics may have potential benefits for individuals with digestive disorders, such as irritable bowel syndrome (IBS) and inflammatory bowel disease (IBD). By promoting the growth of beneficial bacteria and modulating gut microbiota composition, these prebiotics may help alleviate symptoms of digestive disorders, including bloating, abdominal pain, and irregular bowel movements.
Reduced Allergy Risk: HMOs have been shown to have immunomodulatory effects that may help reduce the risk of allergic conditions, such as eczema and food allergies, in infants. By promoting immune tolerance and reducing inflammation, HMOs may help prevent the development of allergic reactions. Similar effects may be observed with Holigos and Stachyose.
Bone Health: Some research suggests that HMOs and similar prebiotics may have benefits for bone health by promoting calcium absorption in the gut and modulating bone metabolism. By supporting gut microbiota composition and enhancing nutrient absorption, these prebiotics may help improve bone mineral density and reduce the risk of osteoporosis.
Weight Management: HMOs and similar prebiotics may have potential benefits for weight management by modulating gut microbiota composition and influencing energy metabolism. By promoting the growth of beneficial bacteria associated with improved metabolic health, these prebiotics may help regulate appetite, reduce calorie absorption, and support healthy weight maintenance.
| Rank | Probiotic | Impact |
|---|---|---|
| genus | Arthrobacter | Reduces |
| genus | Bacillus | Increases |
| genus | Bifidobacterium | Increases |
| genus | Pediococcus | Increases |
| order | Micrococcales | Increases |
| species | Akkermansia muciniphila | Increases |
| species | Arthrobacter agilis | Reduces |
| species | Arthrobacter citreus | Reduces |
| species | Arthrobacter globiformis | Reduces |
| species | Bacillus aeolius | Increases |
| species | Bacillus horti | Increases |
| species | Bacillus infernus | Increases |
| species | Bacillus pumilus | Increases |
| species | Bacillus thermotolerans | Increases |
| species | Bacteroides uniformis | Increases |
| species | Bifidobacterium adolescentis | Increases |
| species | Bifidobacterium animalis | Reduces |
| species | Bifidobacterium bifidum | Increases |
| species | Bifidobacterium breve | Increases |
| species | Bifidobacterium catenulatum | Increases |
| species | Bifidobacterium longum | Increases |
| species | Bifidobacterium pseudocatenulatum | Increases |
| species | Bifidobacterium pseudolongum | Increases |
| species | Blautia hansenii | Increases |
| species | Blautia wexlerae | Increases |
| species | Clostridium beijerinckii | Reduces |
| species | Clostridium butyricum | Increases |
| species | Corynebacterium stationis | Reduces |
| species | Enterococcus durans | Reduces |
| species | Enterococcus faecalis | Reduces |
| species | Enterococcus faecium | Reduces |
| species | Escherichia coli | Reduces |
| species | Lacticaseibacillus rhamnosus | Increases |
| species | Lactiplantibacillus pentosus | Increases |
| species | Lactiplantibacillus plantarum | Increases |
| species | Lactobacillus acidophilus | Increases |
| species | Lactobacillus crispatus | Increases |
| species | Lactobacillus gasseri | Increases |
| species | Lactobacillus helveticus | Increases |
| species | Lactobacillus jensenii | Increases |
| species | Lactobacillus johnsonii | Increases |
| species | Lactobacillus kefiranofaciens | Increases |
| species | Lactococcus cremoris | Reduces |
| species | Lactococcus lactis | Reduces |
| species | Latilactobacillus sakei | Increases |
| species | Lentilactobacillus buchneri | Increases |
| species | Lentilactobacillus kefiri | Increases |
| species | Lentilactobacillus parakefiri | Increases |
| species | Levilactobacillus brevis | Increases |
| species | Ligilactobacillus salivarius | Increases |
| species | Limosilactobacillus fermentum | Increases |
| species | Limosilactobacillus reuteri | Increases |
| species | Parabacteroides distasonis | Increases |
| species | Parabacteroides goldsteinii | Increases |
| species | Pediococcus pentosaceus | Increases |
| species | Phocaeicola coprocola | Increases |
| species | Pseudomonas sp. cn4902 | Reduces |
| species | Streptococcus thermophilus | Reduces |
| species | Veillonella atypica | Reduces |
| species group | Bacillus cereus group | Reduces |
| species group | Pseudomonas putida group | Reduces |
| subspecies | Bifidobacterium animalis subsp. lactis | Reduces |
| subspecies | Bifidobacterium longum subsp. infantis | Increases |
| subspecies | Bifidobacterium longum subsp. longum | Increases |
| subspecies | Lactobacillus delbrueckii subsp. bulgaricus | Increases |
| subspecies | Lactobacillus delbrueckii subsp. lactis | Increases |
We extend modifiers to include items that changes the parent and child taxa. I.e. for a species, that would be the genus that is belongs to and the strains in the species.
| π Direct Citations | πͺπΆ Indirect Citations | Taxonomy | Rank | Effect |
|---|---|---|---|---|
| 0 | 1 | delta/epsilon subdivisions | clade | Decreases |
| 0 | 3 | Terrabacteria group | clade | Increases |
| 0 | 1 | Gammaproteobacteria | class | Decreases |
| 0 | 3 | Desulfuribacillia | class | Decreases |
| 0 | 3 | Dethiobacteria | class | Decreases |
| 0 | 3 | Limnochordia | class | Decreases |
| 0 | 1 | Oligoflexia | class | Decreases |
| 0 | 3 | Thermolithobacteria | class | Decreases |
| 0 | 1 | Zetaproteobacteria | class | Decreases |
| 0 | 3 | Erysipelotrichia | class | Decreases |
| 0 | 1 | Acidithiobacillia | class | Decreases |
| 0 | 3 | Tissierellia | class | Decreases |
| 0 | 1 | Alphaproteobacteria | class | Decreases |
| 0 | 3 | Negativicutes | class | Decreases |
| 0 | 3 | Bacilli | class | Decreases |
| 0 | 1 | Betaproteobacteria | class | Decreases |
| 0 | 1 | Hydrogenophilia | class | Decreases |
| 0 | 2 | Acidimicrobiia | class | Decreases |
| 0 | 2 | Coriobacteriia | class | Decreases |
| 0 | 2 | Nitriliruptoria | class | Decreases |
| 0 | 2 | Rubrobacteria | class | Decreases |
| 0 | 2 | Thermoleophilia | class | Decreases |
| 1 | 3 | Clostridia | class | Increases |
| 2 | 1 | Actinomycetes | class | Increases |
| 0 | 2 | Turicibacteraceae | family | Decreases |
| 1 | 3 | Enterococcaceae | family | Decreases |
| 2 | 1 | Campylobacteraceae | family | Decreases |
| 1 | 4 | Streptococcaceae | family | Decreases |
| 0 | 1 | Corynebacteriaceae | family | Decreases |
| 0 | 1 | Shewanellaceae | family | Decreases |
| 0 | 2 | Micrococcaceae | family | Decreases |
| 0 | 2 | Pseudomonadaceae | family | Decreases |
| 0 | 4 | Clostridiaceae | family | Decreases |
| 1 | 0 | Desulfovibrionaceae | family | Decreases |
| 0 | 1 | Sutterellaceae | family | Decreases |
| 3 | 0 | Muribaculaceae | family | Decreases |
| 0 | 1 | Flavobacteriaceae | family | Decreases |
| 0 | 1 | Lysobacteraceae | family | Decreases |
| 0 | 1 | Rhodanobacteraceae | family | Decreases |
| 0 | 1 | Veillonellaceae | family | Decreases |
| 1 | 2 | Oscillospiraceae | family | Decreases |
| 0 | 1 | Peptostreptococcaceae | family | Decreases |
| 0 | 2 | Staphylococcaceae | family | Decreases |
| 2 | 0 | Erysipelotrichaceae | family | Increases |
| 2 | 1 | Enterobacteriaceae | family | Increases |
| 0 | 1 | Burkholderiaceae | family | Increases |
| 0 | 1 | Comamonadaceae | family | Increases |
| 0 | 1 | Erwiniaceae | family | Increases |
| 0 | 1 | Bacillaceae | family | Increases |
| 0 | 1 | Bruguierivoracaceae | family | Increases |
| 0 | 1 | Candidatus Saccharimonadaceae | family | Increases |
| 0 | 1 | Eubacteriaceae | family | Increases |
| 0 | 1 | Holophagaceae | family | Increases |
| 0 | 1 | Hyphomicrobiaceae | family | Increases |
| 0 | 1 | Peptococcaceae | family | Increases |
| 0 | 1 | Rikenellaceae | family | Increases |
| 0 | 1 | Barnesiellaceae | family | Increases |
| 6 | 3 | Lachnospiraceae | family | Increases |
| 0 | 1 | Listeriaceae | family | Increases |
| 0 | 1 | Tannerellaceae | family | Increases |
| 1 | 0 | Atopobiaceae | family | Increases |
| 1 | 0 | Porphyromonadaceae | family | Increases |
| 1 | 0 | Prevotellaceae | family | Increases |
| 1 | 0 | Ruminococcaceae | family | Increases |
| 1 | 0 | Vibrionaceae | family | Increases |
| 3 | 6 | Lactobacillaceae | family | Increases |
| 2 | 5 | Bacteroidaceae | family | Increases |
| 5 | 15 | Bifidobacteriaceae | family | Increases |
| 0 | 9 | Akkermansiaceae | family | Increases |
| 3 | 0 | Turicibacter | genus | Decreases |
| 4 | 1 | Streptococcus | genus | Decreases |
| 2 | 0 | Pseudomonas | genus | Decreases |
| 3 | 2 | Enterococcus | genus | Decreases |
| 2 | 0 | Rothia | genus | Decreases |
| 2 | 0 | Rothia | genus | Decreases |
| 1 | 1 | Klebsiella | genus | Decreases |
| 1 | 1 | Melissococcus | genus | Decreases |
| 0 | 2 | Arcobacter group | genus | Decreases |
| 0 | 2 | Sulfurospirillum | genus | Decreases |
| 0 | 1 | Bilophila | genus | Decreases |
| 0 | 1 | Faecalibacterium | genus | Decreases |
| 1 | 0 | Arthrobacter | genus | Decreases |
| 3 | 0 | Campylobacter | genus | Decreases |
| 1 | 0 | Corynebacterium | genus | Decreases |
| 1 | 0 | Dokdonella | genus | Decreases |
| 1 | 0 | Lactococcus | genus | Decreases |
| 1 | 0 | Parasutterella | genus | Decreases |
| 1 | 0 | Rudaea | genus | Decreases |
| 1 | 0 | Shewanella | genus | Decreases |
| 1 | 0 | Stenotrophomonas | genus | Decreases |
| 1 | 3 | Escherichia | genus | Decreases |
| 1 | 0 | Kocuria | genus | Decreases |
| 0 | 1 | Duncaniella | genus | Decreases |
| 0 | 1 | Subdoligranulum | genus | Decreases |
| 0 | 1 | Vescimonas | genus | Decreases |
| 1 | 0 | Macrococcus | genus | Decreases |
| 0 | 1 | Absicoccus | genus | Decreases |
| 0 | 1 | Absiella | genus | Decreases |
| 0 | 1 | Acetanaerobacterium | genus | Decreases |
| 0 | 1 | Agathobaculum | genus | Decreases |
| 0 | 1 | Amedibacillus | genus | Decreases |
| 0 | 1 | Amygdalobacter | genus | Decreases |
| 0 | 1 | Anaerobacterium | genus | Decreases |
| 0 | 1 | Anaerofilum | genus | Decreases |
| 0 | 1 | Anaeromassilibacillus | genus | Decreases |
| 0 | 1 | Angelakisella | genus | Decreases |
| 0 | 1 | Beduini | genus | Decreases |
| 0 | 1 | Bittarella (ex Durand et al. 2017) | genus | Decreases |
| 0 | 1 | Breznakia | genus | Decreases |
| 0 | 1 | Brucella | genus | Decreases |
| 0 | 1 | Candidatus Amulumruptor | genus | Decreases |
| 0 | 1 | Candidatus Homeothermus | genus | Decreases |
| 0 | 1 | Candidatus Ishikawella | genus | Decreases |
| 0 | 1 | Candidatus Moranella | genus | Decreases |
| 0 | 1 | Candidatus Phlomobacter | genus | Decreases |
| 0 | 1 | Candidatus Regiella | genus | Decreases |
| 0 | 1 | Candidatus Riesia | genus | Decreases |
| 0 | 1 | Candidatus Schneideria | genus | Decreases |
| 0 | 1 | Candidatus Stoquefichus | genus | Decreases |
| 0 | 1 | Catellicoccus | genus | Decreases |
| 0 | 1 | Catenisphaera | genus | Decreases |
| 0 | 1 | Cellulosibacter | genus | Decreases |
| 0 | 1 | Chiayiivirga | genus | Decreases |
| 0 | 1 | Congzhengia | genus | Decreases |
| 0 | 1 | Copranaerobaculum | genus | Decreases |
| 0 | 1 | Desulfobaculum | genus | Decreases |
| 0 | 1 | Desulfocurvibacter | genus | Decreases |
| 0 | 1 | Desulfocurvus | genus | Decreases |
| 0 | 1 | Desulfohalovibrio | genus | Decreases |
| 0 | 1 | Dielma | genus | Decreases |
| 0 | 1 | Drancourtella | genus | Decreases |
| 0 | 1 | Entomohabitans | genus | Decreases |
| 0 | 1 | Ercella | genus | Decreases |
| 0 | 1 | Erysipelatoclostridium | genus | Decreases |
| 0 | 1 | Faecalicoccus | genus | Decreases |
| 0 | 1 | Floricoccus | genus | Decreases |
| 0 | 1 | Fournierella | genus | Decreases |
| 0 | 1 | Franconibacter | genus | Decreases |
| 0 | 1 | Fumia | genus | Decreases |
| 0 | 1 | Fundidesulfovibrio | genus | Decreases |
| 0 | 1 | Gibbsiella | genus | Decreases |
| 0 | 1 | Gorbachella | genus | Decreases |
| 0 | 1 | Halodesulfovibrio | genus | Decreases |
| 0 | 1 | Harryflintia | genus | Decreases |
| 0 | 1 | Holdemanella | genus | Decreases |
| 0 | 1 | Holdemania | genus | Decreases |
| 0 | 1 | Hominenteromicrobium | genus | Decreases |
| 0 | 1 | Hominicoprocola | genus | Decreases |
| 0 | 1 | Hominilimicola | genus | Decreases |
| 0 | 1 | Humidesulfovibrio | genus | Decreases |
| 0 | 1 | Hydrogeniiclostridium | genus | Decreases |
| 0 | 1 | Hydrogenoanaerobacterium | genus | Decreases |
| 0 | 1 | Ileibacterium | genus | Decreases |
| 0 | 1 | Jeotgalicoccus | genus | Decreases |
| 0 | 1 | Lactovum | genus | Decreases |
| 0 | 1 | Ligaoa | genus | Decreases |
| 0 | 1 | Limnobaculum | genus | Decreases |
| 0 | 1 | Mailhella | genus | Decreases |
| 0 | 1 | Mangrovibacter | genus | Decreases |
| 0 | 1 | Marasmitruncus | genus | Decreases |
| 0 | 1 | Marseillibacter | genus | Decreases |
| 0 | 1 | Massilicoli | genus | Decreases |
| 0 | 1 | Massiliimalia | genus | Decreases |
| 0 | 1 | Massilimicrobiota | genus | Decreases |
| 0 | 1 | Merdibacter | genus | Decreases |
| 0 | 1 | Merdimmobilis | genus | Decreases |
| 0 | 1 | Metakosakonia | genus | Decreases |
| 0 | 1 | Neglectibacter | genus | Decreases |
| 0 | 1 | Neobittarella | genus | Decreases |
| 0 | 1 | Nitratidesulfovibrio | genus | Decreases |
| 0 | 1 | Oscillospira | genus | Decreases |
| 0 | 1 | Papillibacter | genus | Decreases |
| 0 | 1 | Paradesulfovibrio (ex Waite et al. 2020) | genus | Decreases |
| 0 | 1 | Paramuribaculum | genus | Decreases |
| 0 | 1 | Paucidesulfovibrio | genus | Decreases |
| 0 | 1 | Phocea | genus | Decreases |
| 0 | 1 | Pilibacter | genus | Decreases |
| 0 | 1 | Provencibacterium | genus | Decreases |
| 0 | 1 | Pseudobacteroides | genus | Decreases |
| 0 | 1 | Pseudoflavonifractor | genus | Decreases |
| 0 | 1 | Pseudoruminococcus | genus | Decreases |
| 0 | 1 | Pygmaiobacter | genus | Decreases |
| 0 | 1 | Raoultella | genus | Decreases |
| 0 | 1 | Ructibacterium | genus | Decreases |
| 0 | 1 | Saccharofermentans | genus | Decreases |
| 0 | 1 | Salidesulfovibrio | genus | Decreases |
| 0 | 1 | Shuzhengia | genus | Decreases |
| 0 | 1 | Solobacterium | genus | Decreases |
| 0 | 1 | Sporobacter | genus | Decreases |
| 0 | 1 | Traorella | genus | Decreases |
| 0 | 1 | Yanshouia | genus | Decreases |
| 0 | 1 | Youxingia | genus | Decreases |
| 0 | 1 | Maridesulfovibrio | genus | Decreases |
| 0 | 1 | Sodaliphilus | genus | Decreases |
| 0 | 1 | Anaerotruncus | genus | Decreases |
| 0 | 1 | Dysosmobacter | genus | Decreases |
| 0 | 1 | Lawsonibacter | genus | Decreases |
| 0 | 1 | Pusillibacter | genus | Decreases |
| 0 | 1 | Longicatena | genus | Decreases |
| 0 | 1 | Ruthenibacterium | genus | Decreases |
| 1 | 1 | Veillonella | genus | Decreases |
| 0 | 1 | Salmonella | genus | Decreases |
| 1 | 0 | Flavobacterium | genus | Decreases |
| 0 | 1 | Acetivibrio | genus | Decreases |
| 0 | 1 | Desulfovibrio | genus | Decreases |
| 0 | 1 | Scandinavium | genus | Decreases |
| 1 | 1 | Citrobacter | genus | Decreases |
| 0 | 1 | Amedibacterium | genus | Decreases |
| 0 | 1 | Solibaculum | genus | Decreases |
| 0 | 1 | Monoglobus | genus | Decreases |
| 0 | 1 | Thermoclostridium | genus | Decreases |
| 0 | 1 | Acutalibacter | genus | Decreases |
| 0 | 1 | Mageeibacillus | genus | Decreases |
| 0 | 1 | Jejubacter | genus | Decreases |
| 1 | 0 | Erwinia | genus | Decreases |
| 0 | 1 | Flavonifractor | genus | Decreases |
| 0 | 1 | Pseudoclostridium | genus | Decreases |
| 0 | 1 | Caproicibacter | genus | Decreases |
| 0 | 1 | Thermocaproicibacter | genus | Decreases |
| 0 | 1 | Intestinibaculum | genus | Decreases |
| 0 | 1 | Enterobacter | genus | Decreases |
| 0 | 1 | Bulleidia | genus | Decreases |
| 0 | 1 | Caproiciproducens | genus | Decreases |
| 0 | 1 | Megalodesulfovibrio | genus | Decreases |
| 0 | 1 | Caproicibacterium | genus | Decreases |
| 0 | 1 | Desulfolutivibrio | genus | Decreases |
| 0 | 1 | Solidesulfovibrio | genus | Decreases |
| 0 | 1 | Erysipelothrix | genus | Decreases |
| 0 | 1 | Ethanoligenens | genus | Decreases |
| 0 | 1 | Allocoprobacillus | genus | Decreases |
| 0 | 1 | Shimwellia | genus | Decreases |
| 0 | 1 | Oleidesulfovibrio | genus | Decreases |
| 0 | 1 | Oceanidesulfovibrio | genus | Decreases |
| 0 | 1 | Fastidiosipila | genus | Decreases |
| 0 | 1 | Buttiauxella | genus | Decreases |
| 0 | 1 | Superficieibacter | genus | Decreases |
| 0 | 1 | Lawsonia | genus | Decreases |
| 0 | 1 | Pseudodesulfovibrio | genus | Decreases |
| 0 | 1 | Cedecea | genus | Decreases |
| 0 | 1 | Phytobacter | genus | Decreases |
| 0 | 1 | Cronobacter | genus | Decreases |
| 0 | 1 | Pluralibacter | genus | Decreases |
| 0 | 1 | Siccibacter | genus | Decreases |
| 0 | 1 | Candidatus Profftia | genus | Decreases |
| 0 | 1 | Leclercia | genus | Decreases |
| 0 | 1 | Trabulsiella | genus | Decreases |
| 0 | 1 | Tetragenococcus | genus | Decreases |
| 0 | 1 | Pseudocitrobacter | genus | Decreases |
| 0 | 1 | Petroclostridium | genus | Decreases |
| 0 | 1 | Kosakonia | genus | Decreases |
| 0 | 1 | Lelliottia | genus | Decreases |
| 0 | 1 | Atlantibacter | genus | Decreases |
| 0 | 1 | Vagococcus | genus | Decreases |
| 0 | 1 | Pseudescherichia | genus | Decreases |
| 0 | 1 | Yokenella | genus | Decreases |
| 0 | 1 | Plesiomonas | genus | Decreases |
| 0 | 2 | Sakamotonia | genus | Decreases |
| 1 | 0 | Salinicoccus | genus | Decreases |
| 0 | 1 | Microbacter | genus | Increases |
| 0 | 5 | Scardovia | genus | Increases |
| 0 | 5 | Anaerotignum | genus | Increases |
| 0 | 5 | Gardnerella | genus | Increases |
| 0 | 5 | Anaeropeptidivorans | genus | Increases |
| 0 | 2 | Schleiferilactobacillus | genus | Increases |
| 0 | 1 | Photobacterium | genus | Increases |
| 0 | 2 | Liquorilactobacillus | genus | Increases |
| 0 | 5 | Anaeromicropila | genus | Increases |
| 0 | 1 | Leptogranulimonas | genus | Increases |
| 0 | 5 | Chordicoccus | genus | Increases |
| 0 | 1 | Pseudoprevotella | genus | Increases |
| 0 | 5 | Tyzzerella | genus | Increases |
| 0 | 1 | Hoylesella | genus | Increases |
| 0 | 2 | Levilactobacillus | genus | Increases |
| 0 | 1 | Fannyhessea | genus | Increases |
| 0 | 2 | Companilactobacillus | genus | Increases |
| 2 | 0 | Bacillus | genus | Increases |
| 2 | 0 | Staphylococcus | genus | Increases |
| 0 | 5 | Anaerocolumna | genus | Increases |
| 5 | 2 | Clostridium | genus | Increases |
| 0 | 2 | Loigolactobacillus | genus | Increases |
| 0 | 5 | Enterocloster | genus | Increases |
| 0 | 2 | Weissella | genus | Increases |
| 0 | 5 | Pseudobutyrivibrio | genus | Increases |
| 0 | 5 | Sporofaciens | genus | Increases |
| 0 | 2 | Fructilactobacillus | genus | Increases |
| 0 | 5 | Parascardovia | genus | Increases |
| 0 | 2 | Furfurilactobacillus | genus | Increases |
| 0 | 1 | Atopobium | genus | Increases |
| 0 | 5 | Lachnospira | genus | Increases |
| 0 | 5 | Wujia | genus | Increases |
| 0 | 5 | Simiaoa | genus | Increases |
| 0 | 2 | Latilactobacillus | genus | Increases |
| 0 | 5 | Sellimonas | genus | Increases |
| 0 | 5 | Herbinix | genus | Increases |
| 0 | 1 | Mammaliicoccus | genus | Increases |
| 1 | 1 | Kluyvera | genus | Increases |
| 0 | 5 | Qiania | genus | Increases |
| 1 | 0 | Burkholderia | genus | Increases |
| 1 | 0 | Listeria | genus | Increases |
| 0 | 5 | Novisyntrophococcus | genus | Increases |
| 1 | 1 | Shigella | genus | Increases |
| 0 | 5 | Lachnoanaerobaculum | genus | Increases |
| 0 | 1 | Parafannyhessea | genus | Increases |
| 0 | 5 | Butyrivibrio | genus | Increases |
| 0 | 1 | Lancefieldella | genus | Increases |
| 0 | 1 | Thermophilibacter | genus | Increases |
| 0 | 2 | Lactiplantibacillus | genus | Increases |
| 0 | 5 | Wansuia | genus | Increases |
| 0 | 5 | Acetatifactor | genus | Increases |
| 0 | 5 | Acetitomaculum | genus | Increases |
| 0 | 5 | Agathobacter | genus | Increases |
| 0 | 1 | Aliivibrio | genus | Increases |
| 0 | 1 | Alloprevotella | genus | Increases |
| 0 | 5 | Anaerobium | genus | Increases |
| 0 | 3 | Anaerorhabdus | genus | Increases |
| 0 | 5 | Anaerosacchariphilus | genus | Increases |
| 0 | 5 | Anaerosporobacter | genus | Increases |
| 0 | 5 | Anaerotaenia | genus | Increases |
| 0 | 5 | Anthropogastromicrobium | genus | Increases |
| 0 | 5 | Bariatricus | genus | Increases |
| 0 | 5 | Brotaphodocola | genus | Increases |
| 0 | 5 | Butyribacter | genus | Increases |
| 0 | 5 | Candidatus Epulonipiscium | genus | Increases |
| 0 | 1 | Candidatus Vestibaculum | genus | Increases |
| 0 | 5 | Catenibacillus | genus | Increases |
| 0 | 5 | Catonella | genus | Increases |
| 0 | 5 | Claveliimonas | genus | Increases |
| 0 | 5 | Cuneatibacter | genus | Increases |
| 0 | 5 | Diplocloster | genus | Increases |
| 0 | 5 | Eisenbergiella | genus | Increases |
| 0 | 1 | Enterovibrio | genus | Increases |
| 0 | 5 | Extibacter | genus | Increases |
| 0 | 5 | Faecalicatena | genus | Increases |
| 0 | 5 | Faecalimonas | genus | Increases |
| 0 | 1 | Falsiporphyromonas | genus | Increases |
| 0 | 1 | Fermentimonas | genus | Increases |
| 0 | 5 | Frisingicoccus | genus | Increases |
| 0 | 5 | Fusicatenibacter | genus | Increases |
| 0 | 1 | Gabonia | genus | Increases |
| 0 | 1 | Gabonibacter | genus | Increases |
| 0 | 5 | Gallintestinimicrobium | genus | Increases |
| 0 | 5 | Gluceribacter | genus | Increases |
| 0 | 1 | Grimontia | genus | Increases |
| 0 | 1 | Hallella | genus | Increases |
| 0 | 5 | Hespellia | genus | Increases |
| 0 | 5 | Hominifimenecus | genus | Increases |
| 0 | 5 | Hominisplanchenecus | genus | Increases |
| 0 | 5 | Hoministercoradaptatus | genus | Increases |
| 0 | 5 | Hominiventricola | genus | Increases |
| 0 | 1 | Ihuprevotella | genus | Increases |
| 0 | 5 | Jingyaoa | genus | Increases |
| 0 | 5 | Johnsonella | genus | Increases |
| 0 | 5 | Jutongia | genus | Increases |
| 0 | 5 | Kineothrix | genus | Increases |
| 0 | 5 | Lachnobacterium | genus | Increases |
| 0 | 5 | Lachnotalea | genus | Increases |
| 0 | 1 | Lascolabacillus | genus | Increases |
| 0 | 1 | Libanicoccus | genus | Increases |
| 0 | 5 | Lientehia | genus | Increases |
| 0 | 5 | Luxibacter | genus | Increases |
| 0 | 1 | Macellibacteroides | genus | Increases |
| 0 | 1 | Marseilla | genus | Increases |
| 0 | 1 | Massilimalia | genus | Increases |
| 0 | 1 | Massiliprevotella | genus | Increases |
| 0 | 5 | Merdimonas | genus | Increases |
| 0 | 1 | Metaprevotella | genus | Increases |
| 0 | 5 | Mobilitalea | genus | Increases |
| 0 | 5 | Moryella | genus | Increases |
| 0 | 5 | Muricomes | genus | Increases |
| 0 | 5 | Niameybacter | genus | Increases |
| 0 | 5 | Oliverpabstia | genus | Increases |
| 0 | 5 | Oribacterium | genus | Increases |
| 0 | 5 | Parablautia | genus | Increases |
| 0 | 1 | Paraphotobacterium | genus | Increases |
| 0 | 5 | Pararoseburia | genus | Increases |
| 0 | 5 | Parasporobacterium | genus | Increases |
| 0 | 1 | Paratractidigestivibacter | genus | Increases |
| 0 | 5 | Porcincola | genus | Increases |
| 0 | 1 | Prevotellamassilia | genus | Increases |
| 0 | 5 | Robinsoniella | genus | Increases |
| 0 | 1 | Salinivibrio | genus | Increases |
| 0 | 1 | Sanguibacteroides | genus | Increases |
| 0 | 5 | Schaedlerella | genus | Increases |
| 0 | 1 | Sharpea | genus | Increases |
| 0 | 5 | Shuttleworthella | genus | Increases |
| 0 | 5 | Sporobacterium | genus | Increases |
| 0 | 5 | Stomatobaculum | genus | Increases |
| 0 | 5 | Suonthocola | genus | Increases |
| 0 | 5 | Syntrophococcus | genus | Increases |
| 0 | 1 | Thaumasiovibrio | genus | Increases |
| 0 | 1 | Tractidigestivibacter | genus | Increases |
| 0 | 5 | Waltera | genus | Increases |
| 0 | 5 | Zhenhengia | genus | Increases |
| 0 | 3 | Lacticaseibacillus | genus | Increases |
| 0 | 2 | Leuconostoc | genus | Increases |
| 1 | 1 | Biostraticola | genus | Increases |
| 1 | 1 | Rosenbergiella | genus | Increases |
| 0 | 5 | Coprococcus | genus | Increases |
| 0 | 1 | Paraprevotella | genus | Increases |
| 0 | 5 | Anaerostipes | genus | Increases |
| 0 | 5 | Dorea | genus | Increases |
| 0 | 1 | Olsenella | genus | Increases |
| 0 | 5 | Anaerobutyricum | genus | Increases |
| 0 | 3 | Paucilactobacillus | genus | Increases |
| 0 | 1 | Prevotella | genus | Increases |
| 1 | 1 | Oscillibacter | genus | Increases |
| 1 | 1 | Faecalitalea | genus | Increases |
| 0 | 1 | Parolsenella | genus | Increases |
| 1 | 1 | Muribaculum | genus | Increases |
| 0 | 1 | Segatella | genus | Increases |
| 0 | 1 | Leyella | genus | Increases |
| 0 | 2 | Apilactobacillus | genus | Increases |
| 0 | 3 | Limosilactobacillus | genus | Increases |
| 0 | 6 | Lacrimispora | genus | Increases |
| 1 | 0 | Alistipes | genus | Increases |
| 1 | 0 | Candidatus Saccharimonas | genus | Increases |
| 0 | 6 | Mediterraneibacter | genus | Increases |
| 0 | 3 | Secundilactobacillus | genus | Increases |
| 1 | 1 | Faecalibaculum | genus | Increases |
| 0 | 1 | Petrimonas | genus | Increases |
| 0 | 2 | Acetilactobacillus | genus | Increases |
| 0 | 2 | Agrilactobacillus | genus | Increases |
| 0 | 2 | Amylolactobacillus | genus | Increases |
| 0 | 2 | Bombilactobacillus | genus | Increases |
| 0 | 2 | Dellaglioa | genus | Increases |
| 0 | 2 | Fructobacillus | genus | Increases |
| 0 | 2 | Holzapfeliella | genus | Increases |
| 0 | 2 | Lapidilactobacillus | genus | Increases |
| 0 | 2 | Mediterranea | genus | Increases |
| 0 | 2 | Nicoliella | genus | Increases |
| 0 | 2 | Oenococcus | genus | Increases |
| 0 | 2 | Periweissella | genus | Increases |
| 1 | 1 | Allobaculum | genus | Increases |
| 1 | 1 | Ruminiclostridium | genus | Increases |
| 0 | 3 | Ligilactobacillus | genus | Increases |
| 0 | 1 | Porphyromonas | genus | Increases |
| 1 | 0 | Bacillus | genus | Increases |
| 1 | 0 | Barnesiella | genus | Increases |
| 1 | 0 | Comamonas | genus | Increases |
| 1 | 0 | Eubacterium | genus | Increases |
| 1 | 0 | Geothrix | genus | Increases |
| 1 | 0 | Gordonibacter | genus | Increases |
| 1 | 0 | Hungatella | genus | Increases |
| 1 | 0 | Hyphomicrobium | genus | Increases |
| 1 | 0 | Intestinimonas | genus | Increases |
| 1 | 0 | Nesterenkonia | genus | Increases |
| 1 | 0 | Ochrobactrum | genus | Increases |
| 1 | 0 | Odoribacter | genus | Increases |
| 1 | 0 | Peptococcus | genus | Increases |
| 1 | 0 | Rhizobium | genus | Increases |
| 1 | 0 | Rikenella | genus | Increases |
| 0 | 3 | Lentilactobacillus | genus | Increases |
| 2 | 6 | Blautia | genus | Increases |
| 1 | 5 | Lachnoclostridium | genus | Increases |
| 1 | 2 | Pediococcus | genus | Increases |
| 1 | 5 | Murimonas | genus | Increases |
| 1 | 1 | Vibrio | genus | Increases |
| 2 | 1 | Ruminococcus | genus | Increases |
| 1 | 5 | Marvinbryantia | genus | Increases |
| 3 | 5 | Roseburia | genus | Increases |
| 3 | 0 | Romboutsia | genus | Increases |
| 0 | 4 | Phocaeicola | genus | Increases |
| 0 | 5 | Aeriscardovia | genus | Increases |
| 0 | 5 | Alloscardovia | genus | Increases |
| 0 | 5 | Bombiscardovia | genus | Increases |
| 0 | 5 | Galliscardovia | genus | Increases |
| 0 | 5 | Neoscardovia | genus | Increases |
| 0 | 5 | Pseudoscardovia | genus | Increases |
| 2 | 1 | Parabacteroides | genus | Increases |
| 8 | 1 | Bacteroides | genus | Increases |
| 9 | 1 | Lactobacillus | genus | Increases |
| 10 | 3 | Akkermansia | genus | Increases |
| 21 | 2 | Bifidobacterium | genus | Increases |
| 0 | 2 | environmental samples | no rank | Decreases |
| 0 | 2 | environmental samples | no rank | Decreases |
| 0 | 2 | environmental samples | no rank | Decreases |
| 0 | 2 | Klebsiella/Raoultella group | no rank | Decreases |
| 0 | 2 | unclassified Campylobacteraceae | no rank | Decreases |
| 0 | 2 | unclassified Pseudomonas | no rank | Decreases |
| 0 | 2 | unclassified Rothia (in: high G+C Gram-positive bacteria) | no rank | Decreases |
| 0 | 2 | unclassified Turicibacter | no rank | Decreases |
| 0 | 4 | environmental samples | no rank | Decreases |
| 0 | 4 | environmental samples | no rank | Decreases |
| 0 | 4 | unclassified Clostridium | no rank | Decreases |
| 0 | 4 | unclassified Streptococcus | no rank | Decreases |
| 0 | 3 | Bacillota incertae sedis | no rank | Decreases |
| 0 | 3 | Bacillota sensu stricto incertae sedis | no rank | Decreases |
| 0 | 1 | Enterobacteriaceae incertae sedis | no rank | Decreases |
| 0 | 1 | environmental samples | no rank | Decreases |
| 0 | 1 | environmental samples | no rank | Decreases |
| 0 | 1 | environmental samples | no rank | Decreases |
| 0 | 1 | environmental samples | no rank | Decreases |
| 0 | 1 | environmental samples | no rank | Decreases |
| 0 | 1 | environmental samples | no rank | Decreases |
| 0 | 3 | environmental samples | no rank | Decreases |
| 0 | 3 | environmental samples | no rank | Decreases |
| 0 | 1 | environmental samples | no rank | Decreases |
| 0 | 1 | environmental samples | no rank | Decreases |
| 0 | 1 | environmental samples | no rank | Decreases |
| 0 | 3 | environmental samples | no rank | Decreases |
| 0 | 1 | environmental samples | no rank | Decreases |
| 0 | 1 | environmental samples | no rank | Decreases |
| 0 | 1 | environmental samples | no rank | Decreases |
| 0 | 1 | environmental samples | no rank | Decreases |
| 0 | 1 | environmental samples | no rank | Decreases |
| 0 | 1 | environmental samples | no rank | Decreases |
| 0 | 1 | environmental samples | no rank | Decreases |
| 0 | 1 | Erysipelotrichaceae incertae sedis | no rank | Decreases |
| 0 | 1 | Oscillospiraceae incertae sedis | no rank | Decreases |
| 0 | 1 | Pseudomonadota incertae sedis | no rank | Decreases |
| 0 | 1 | unclassified Arthrobacter | no rank | Decreases |
| 0 | 3 | unclassified Bacillota | no rank | Decreases |
| 0 | 3 | unclassified Campylobacter | no rank | Decreases |
| 0 | 1 | unclassified Citrobacter | no rank | Decreases |
| 0 | 1 | unclassified Corynebacterium | no rank | Decreases |
| 0 | 1 | unclassified Desulfovibrionaceae | no rank | Decreases |
| 0 | 1 | unclassified Enterobacteriaceae | no rank | Decreases |
| 0 | 1 | unclassified Enterococcaceae | no rank | Decreases |
| 0 | 3 | unclassified Enterococcus | no rank | Decreases |
| 0 | 1 | unclassified Erwinia | no rank | Decreases |
| 0 | 1 | unclassified Erysipelotrichaceae | no rank | Decreases |
| 0 | 1 | unclassified Flavobacterium | no rank | Decreases |
| 0 | 1 | unclassified Klebsiella | no rank | Decreases |
| 0 | 1 | unclassified Kocuria | no rank | Decreases |
| 0 | 1 | unclassified Lactococcus | no rank | Decreases |
| 0 | 1 | unclassified Macrococcus | no rank | Decreases |
| 0 | 1 | unclassified Muribaculaceae | no rank | Decreases |
| 0 | 1 | unclassified Oscillospiraceae | no rank | Decreases |
| 0 | 1 | unclassified Parasutterella | no rank | Decreases |
| 0 | 1 | unclassified Pseudomonadota | no rank | Decreases |
| 0 | 1 | unclassified Romboutsia | no rank | Decreases |
| 0 | 1 | unclassified Shewanella | no rank | Decreases |
| 0 | 1 | unclassified Stenotrophomonas | no rank | Decreases |
| 0 | 1 | unclassified Streptococcaceae | no rank | Decreases |
| 0 | 1 | unclassified Veillonella | no rank | Decreases |
| 0 | 2 | Actinomycetes incertae sedis | no rank | Decreases |
| 0 | 2 | environmental samples | no rank | Decreases |
| 0 | 2 | environmental samples | no rank | Decreases |
| 0 | 2 | environmental samples | no rank | Decreases |
| 0 | 2 | Escherichia coli O1:K1:H7 | no rank | Decreases |
| 0 | 2 | Escherichia coli O139:H1 | no rank | Decreases |
| 0 | 2 | Escherichia coli O141:H4 | no rank | Decreases |
| 0 | 2 | Escherichia coli O145:H34 | no rank | Decreases |
| 0 | 2 | Escherichia coli O15:H12 | no rank | Decreases |
| 0 | 2 | Escherichia coli O155:H21 | no rank | Decreases |
| 0 | 2 | Escherichia coli O158:H23 | no rank | Decreases |
| 0 | 2 | Escherichia coli O16:H48 | no rank | Decreases |
| 0 | 2 | Escherichia coli O170:H18 | no rank | Decreases |
| 0 | 2 | Escherichia coli O18ac:H14 | no rank | Decreases |
| 0 | 2 | Escherichia coli O19:H7 | no rank | Decreases |
| 0 | 2 | Escherichia coli O2:K1:H4 | no rank | Decreases |
| 0 | 2 | Escherichia coli O2:K1:H5 | no rank | Decreases |
| 0 | 2 | Escherichia coli O2:K1:H7 | no rank | Decreases |
| 0 | 2 | Escherichia coli O20:H12 | no rank | Decreases |
| 0 | 2 | Escherichia coli O25:H16 | no rank | Decreases |
| 0 | 2 | Escherichia coli O55:H7 | no rank | Decreases |
| 0 | 2 | Escherichia coli O68:H12 | no rank | Decreases |
| 0 | 2 | Escherichia coli O7:H15 | no rank | Decreases |
| 0 | 2 | Escherichia coli O78:H51 | no rank | Decreases |
| 0 | 2 | Escherichia coli O80:H26 | no rank | Decreases |
| 0 | 2 | Escherichia coli O84:H7 | no rank | Decreases |
| 0 | 2 | Escherichia coli O85:H1 | no rank | Decreases |
| 0 | 2 | unclassified Actinomycetes | no rank | Decreases |
| 0 | 2 | unclassified Actinomycetota | no rank | Decreases |
| 0 | 1 | unclassified Salinicoccus | no rank | Decreases |
| 0 | 2 | unclassified Staphylococcus | no rank | Decreases |
| 0 | 1 | Clostridium perfringens E | no rank | Increases |
| 0 | 1 | Clostridium perfringens B | no rank | Increases |
| 0 | 1 | Clostridium perfringens D | no rank | Increases |
| 0 | 1 | Brucella/Ochrobactrum group | no rank | Increases |
| 0 | 1 | Clostridium perfringens A | no rank | Increases |
| 0 | 1 | Clostridium perfringens C | no rank | Increases |
| 0 | 1 | Clostridium perfringens CPE | no rank | Increases |
| 0 | 1 | environmental samples | no rank | Increases |
| 0 | 1 | environmental samples | no rank | Increases |
| 0 | 3 | environmental samples | no rank | Increases |
| 0 | 1 | environmental samples | no rank | Increases |
| 0 | 1 | environmental samples | no rank | Increases |
| 0 | 1 | environmental samples | no rank | Increases |
| 0 | 1 | environmental samples | no rank | Increases |
| 0 | 1 | environmental samples | no rank | Increases |
| 0 | 1 | environmental samples | no rank | Increases |
| 0 | 1 | environmental samples | no rank | Increases |
| 0 | 1 | environmental samples | no rank | Increases |
| 0 | 1 | environmental samples | no rank | Increases |
| 0 | 1 | environmental samples | no rank | Increases |
| 0 | 1 | environmental samples | no rank | Increases |
| 0 | 5 | environmental samples | no rank | Increases |
| 0 | 1 | environmental samples | no rank | Increases |
| 0 | 1 | environmental samples | no rank | Increases |
| 0 | 1 | environmental samples | no rank | Increases |
| 0 | 1 | environmental samples | no rank | Increases |
| 0 | 5 | Lachnospiraceae incertae sedis | no rank | Increases |
| 0 | 1 | Rhizobium/Agrobacterium group | no rank | Increases |
| 0 | 1 | unclassified Alistipes | no rank | Increases |
| 0 | 1 | unclassified Atopobiaceae | no rank | Increases |
| 0 | 1 | unclassified Bacillus (in: firmicutes) | no rank | Increases |
| 0 | 1 | unclassified Barnesiella | no rank | Increases |
| 0 | 3 | unclassified Blautia | no rank | Increases |
| 0 | 1 | unclassified Burkholderia | no rank | Increases |
| 0 | 1 | unclassified Candidatus Saccharimonas | no rank | Increases |
| 0 | 1 | unclassified Comamonas | no rank | Increases |
| 0 | 1 | unclassified Eubacterium (in: firmicutes) | no rank | Increases |
| 0 | 1 | unclassified Hungatella | no rank | Increases |
| 0 | 1 | unclassified Hyphomicrobium | no rank | Increases |
| 0 | 1 | unclassified Kluyvera | no rank | Increases |
| 0 | 1 | unclassified Lachnoclostridium | no rank | Increases |
| 0 | 5 | unclassified Lachnospiraceae | no rank | Increases |
| 0 | 1 | unclassified Listeria | no rank | Increases |
| 0 | 1 | unclassified Marvinbryantia | no rank | Increases |
| 0 | 1 | unclassified Nesterenkonia | no rank | Increases |
| 0 | 1 | unclassified Ochrobactrum | no rank | Increases |
| 0 | 1 | unclassified Oscillibacter | no rank | Increases |
| 0 | 1 | unclassified Parabacteroides | no rank | Increases |
| 0 | 1 | unclassified Pediococcus | no rank | Increases |
| 0 | 1 | unclassified Peptococcus | no rank | Increases |
| 0 | 1 | unclassified Porphyromonadaceae | no rank | Increases |
| 0 | 1 | unclassified Prevotellaceae | no rank | Increases |
| 0 | 1 | unclassified Rhizobium | no rank | Increases |
| 0 | 3 | unclassified Roseburia | no rank | Increases |
| 0 | 1 | unclassified Shigella | no rank | Increases |
| 0 | 1 | unclassified Vibrio | no rank | Increases |
| 0 | 1 | Vibrionaceae incertae sedis | no rank | Increases |
| 0 | 2 | Bacteroidaceae incertae sedis | no rank | Increases |
| 0 | 2 | environmental samples | no rank | Increases |
| 0 | 2 | environmental samples | no rank | Increases |
| 0 | 2 | unclassified Bacteroidaceae | no rank | Increases |
| 0 | 2 | unclassified Lactobacillaceae | no rank | Increases |
| 0 | 2 | unclassified Ruminococcus | no rank | Increases |
| 0 | 5 | unclassified Bifidobacteriaceae (miscellaneous) | no rank | Increases |
| 0 | 9 | environmental samples | no rank | Increases |
| 0 | 7 | environmental samples | no rank | Increases |
| 0 | 9 | unclassified Akkermansia | no rank | Increases |
| 0 | 7 | unclassified Bacteroides | no rank | Increases |
| 0 | 8 | environmental samples | no rank | Increases |
| 0 | 8 | unclassified Lactobacillus | no rank | Increases |
| 0 | 19 | environmental samples | no rank | Increases |
| 0 | 19 | unclassified Bifidobacterium | no rank | Increases |
| 0 | 2 | unclassified Pseudomonas | norank | Decreases |
| 0 | 1 | environmental samples | norank | Increases |
| 0 | 1 | Desulfovibrionales | order | Decreases |
| 0 | 1 | Enterobacterales | order | Decreases |
| 0 | 5 | Eubacteriales | order | Decreases |
| 0 | 1 | Erysipelotrichales | order | Decreases |
| 0 | 2 | Campylobacterales | order | Decreases |
| 0 | 2 | Acidothermales | order | Decreases |
| 0 | 2 | Actinomycetales | order | Decreases |
| 0 | 2 | Actinopolysporales | order | Decreases |
| 0 | 2 | Candidatus Nanopelagicales | order | Decreases |
| 0 | 2 | Catenulisporales | order | Decreases |
| 0 | 2 | Cryptosporangiales | order | Decreases |
| 0 | 2 | Frankiales | order | Decreases |
| 0 | 2 | Geodermatophilales | order | Decreases |
| 0 | 2 | Glycomycetales | order | Decreases |
| 0 | 2 | Jatrophihabitantales | order | Decreases |
| 0 | 2 | Jiangellales | order | Decreases |
| 0 | 2 | Kineosporiales | order | Decreases |
| 0 | 2 | Kitasatosporales | order | Decreases |
| 0 | 2 | Lactobacillales | order | Decreases |
| 0 | 2 | Micrococcales | order | Decreases |
| 0 | 2 | Micromonosporales | order | Decreases |
| 0 | 2 | Motilibacterales | order | Decreases |
| 0 | 2 | Mycobacteriales | order | Decreases |
| 0 | 2 | Nakamurellales | order | Decreases |
| 0 | 2 | Propionibacteriales | order | Decreases |
| 0 | 2 | Pseudonocardiales | order | Decreases |
| 0 | 2 | Sporichthyales | order | Decreases |
| 0 | 2 | Streptosporangiales | order | Decreases |
| 0 | 1 | Coriobacteriales | order | Increases |
| 0 | 1 | Vibrionales | order | Increases |
| 0 | 5 | Bacteroidales | order | Increases |
| 1 | 6 | Bifidobacteriales | order | Increases |
| 4 | 0 | Bacillota | phylum | Decreases |
| 2 | 0 | Pseudomonadota | phylum | Decreases |
| 2 | 0 | Actinomycetota | phylum | Increases |
| 1 | 0 | Bacteroidota | phylum | Increases |
| 0 | 5 | Bacteroides togonis | QST454 | Increases |
| 0 | 5 | Bacteroides bouchesdurhonensis | QSV445 | Increases |
| 0 | 2 | Streptococcus agalactiae serogroup Ia | serogroup | Decreases |
| 0 | 2 | Streptococcus agalactiae serogroup III | serogroup | Decreases |
| 0 | 2 | Streptococcus agalactiae serogroup V | serogroup | Decreases |
| 0 | 2 | Escherichia coli O103 | serogroup | Decreases |
| 0 | 2 | Escherichia coli O111 | serogroup | Decreases |
| 0 | 2 | Escherichia coli O119 | serogroup | Decreases |
| 0 | 2 | Escherichia coli O121 | serogroup | Decreases |
| 0 | 2 | Escherichia coli O145 | serogroup | Decreases |
| 0 | 2 | Escherichia coli O155 | serogroup | Decreases |
| 0 | 2 | Escherichia coli O157 | serogroup | Decreases |
| 0 | 2 | Escherichia coli O177 | serogroup | Decreases |
| 0 | 2 | Escherichia coli O26 | serogroup | Decreases |
| 0 | 2 | Escherichia coli O3 | serogroup | Decreases |
| 0 | 2 | Escherichia coli O43 | serogroup | Decreases |
| 0 | 2 | Escherichia coli O5 | serogroup | Decreases |
| 0 | 2 | Escherichia coli O78 | serogroup | Decreases |
| 0 | 2 | Escherichia coli O86 | serogroup | Decreases |
| 0 | 2 | Escherichia coli O91 | serogroup | Decreases |
| 0 | 1 | Shigella dysenteriae 4 | serotype | Decreases |
| 0 | 2 | Escherichia coli H20 | serotype | Decreases |
| 0 | 2 | Escherichia coli O1:H42 | serotype | Decreases |
| 0 | 2 | Escherichia coli O1:HNT | serotype | Decreases |
| 0 | 2 | Escherichia coli O10:H32 | serotype | Decreases |
| 0 | 2 | Escherichia coli O10:K5(L):H4 | serotype | Decreases |
| 0 | 2 | Escherichia coli O100:H21 | serotype | Decreases |
| 0 | 2 | Escherichia coli O103:H11 | serotype | Decreases |
| 0 | 2 | Escherichia coli O103:H2 | serotype | Decreases |
| 0 | 2 | Escherichia coli O103:H25 | serotype | Decreases |
| 0 | 2 | Escherichia coli O104:H21 | serotype | Decreases |
| 0 | 2 | Escherichia coli O104:H4 | serotype | Decreases |
| 0 | 2 | Escherichia coli O111:H- | serotype | Decreases |
| 0 | 2 | Escherichia coli O111:H11 | serotype | Decreases |
| 0 | 2 | Escherichia coli O111:H8 | serotype | Decreases |
| 0 | 2 | Escherichia coli O111:NM | serotype | Decreases |
| 0 | 2 | Escherichia coli O112ab:H8 | serotype | Decreases |
| 0 | 2 | Escherichia coli O112ac:H19 | serotype | Decreases |
| 0 | 2 | Escherichia coli O113:H21 | serotype | Decreases |
| 0 | 2 | Escherichia coli O114:H49 | serotype | Decreases |
| 0 | 2 | Escherichia coli O118:H16 | serotype | Decreases |
| 0 | 2 | Escherichia coli O121:H19 | serotype | Decreases |
| 0 | 2 | Escherichia coli O121:H7 | serotype | Decreases |
| 0 | 2 | Escherichia coli O123:H11 | serotype | Decreases |
| 0 | 2 | Escherichia coli O125ac:K+:H10 | serotype | Decreases |
| 0 | 2 | Escherichia coli O126:H45 | serotype | Decreases |
| 0 | 2 | Escherichia coli O127:H27 | serotype | Decreases |
| 0 | 2 | Escherichia coli O127:H6 | serotype | Decreases |
| 0 | 2 | Escherichia coli O128:H2 | serotype | Decreases |
| 0 | 2 | Escherichia coli O128ac:H12 | serotype | Decreases |
| 0 | 2 | Escherichia coli O139:H28 | serotype | Decreases |
| 0 | 2 | Escherichia coli O145:H25 | serotype | Decreases |
| 0 | 2 | Escherichia coli O145:H28 | serotype | Decreases |
| 0 | 2 | Escherichia coli O145:NM | serotype | Decreases |
| 0 | 2 | Escherichia coli O146:H21 | serotype | Decreases |
| 0 | 2 | Escherichia coli O15:H18 | serotype | Decreases |
| 0 | 2 | Escherichia coli O150:H6 | serotype | Decreases |
| 0 | 2 | Escherichia coli O152:H23 | serotype | Decreases |
| 0 | 2 | Escherichia coli O153:H2 | serotype | Decreases |
| 0 | 2 | Escherichia coli O156:H25 | serotype | Decreases |
| 0 | 2 | Escherichia coli O157:H- | serotype | Decreases |
| 0 | 2 | Escherichia coli O157:H43 | serotype | Decreases |
| 0 | 2 | Escherichia coli O157:H7 | serotype | Decreases |
| 0 | 2 | Escherichia coli O157:NM | serotype | Decreases |
| 0 | 2 | Escherichia coli O16:H6 | serotype | Decreases |
| 0 | 2 | Escherichia coli O165:H25 | serotype | Decreases |
| 0 | 2 | Escherichia coli O167:H26 | serotype | Decreases |
| 0 | 2 | Escherichia coli O174:H2 | serotype | Decreases |
| 0 | 2 | Escherichia coli O174:H21 | serotype | Decreases |
| 0 | 2 | Escherichia coli O174:H8 | serotype | Decreases |
| 0 | 2 | Escherichia coli O176:H45 | serotype | Decreases |
| 0 | 2 | Escherichia coli O177:NM | serotype | Decreases |
| 0 | 2 | Escherichia coli O2:H6 | serotype | Decreases |
| 0 | 2 | Escherichia coli O2:K2:H1 | serotype | Decreases |
| 0 | 2 | Escherichia coli O25:H1 | serotype | Decreases |
| 0 | 2 | Escherichia coli O25:NM | serotype | Decreases |
| 0 | 2 | Escherichia coli O26:H1 | serotype | Decreases |
| 0 | 2 | Escherichia coli O26:H11 | serotype | Decreases |
| 0 | 2 | Escherichia coli O28ac:NM | serotype | Decreases |
| 0 | 2 | Escherichia coli O29:H4 | serotype | Decreases |
| 0 | 2 | Escherichia coli O32:H37 | serotype | Decreases |
| 0 | 2 | Escherichia coli O39:NM | serotype | Decreases |
| 0 | 2 | Escherichia coli O44:H18 | serotype | Decreases |
| 0 | 2 | Escherichia coli O45:H2 | serotype | Decreases |
| 0 | 2 | Escherichia coli O6:H16 | serotype | Decreases |
| 0 | 2 | Escherichia coli O6:H16:CFA/II | serotype | Decreases |
| 0 | 2 | Escherichia coli O6:K2:H1 | serotype | Decreases |
| 0 | 2 | Escherichia coli O69:H11 | serotype | Decreases |
| 0 | 2 | Escherichia coli O7:H4 | serotype | Decreases |
| 0 | 2 | Escherichia coli O7:K1 | serotype | Decreases |
| 0 | 2 | Escherichia coli O78:H12 | serotype | Decreases |
| 0 | 2 | Escherichia coli O78:H4 | serotype | Decreases |
| 0 | 2 | Escherichia coli O79:H7 | serotype | Decreases |
| 0 | 2 | Escherichia coli O8:H8 | serotype | Decreases |
| 0 | 2 | Escherichia coli O81:NM | serotype | Decreases |
| 0 | 2 | Escherichia coli O83:H1 | serotype | Decreases |
| 0 | 2 | Escherichia coli O86:H34 | serotype | Decreases |
| 0 | 2 | Escherichia coli O89m:H10 | serotype | Decreases |
| 0 | 2 | Escherichia coli O89m:H9 | serotype | Decreases |
| 0 | 2 | Escherichia coli O9:H10 | serotype | Decreases |
| 0 | 2 | Escherichia coli O91:H14 | serotype | Decreases |
| 0 | 2 | Escherichia coli O91:NM | serotype | Decreases |
| 0 | 2 | Escherichia coli O99:H6 | serotype | Decreases |
| 0 | 2 | Escherichia coli ONT:H33 | serotype | Decreases |
| 0 | 2 | Rothia mucilaginosa | species | Decreases |
| 1 | 2 | Enterococcus asini | species | Decreases |
| 1 | 2 | Enterococcus faecalis | species | Decreases |
| 0 | 2 | Turicibacter bilis | species | Decreases |
| 1 | 1 | Turicibacter sanguinis | species | Decreases |
| 0 | 4 | Streptococcus salivarius | species | Decreases |
| 1 | 3 | Clostridium disporicum | species | Decreases |
| 1 | 1 | Staphylococcus cohnii | species | Decreases |
| 0 | 4 | Streptococcus parasanguinis | species | Decreases |
| 1 | 1 | Rothia dentocariosa | species | Decreases |
| 2 | 2 | Streptococcus agalactiae | species | Decreases |
| 1 | 3 | Streptococcus cuniculipharyngis | species | Decreases |
| 1 | 3 | Streptococcus danieliae | species | Decreases |
| 0 | 4 | Streptococcus thermophilus | species | Decreases |
| 1 | 2 | Enterococcus avium | species | Decreases |
| 0 | 2 | [Flavobacterium] lutescens | species | Decreases |
| 0 | 2 | Campylobacter porcelli | species | Decreases |
| 0 | 2 | Campylobacter sp. | species | Decreases |
| 0 | 2 | Campylobacter sp. 10_1_50 | species | Decreases |
| 0 | 2 | Campylobacter sp. canine oral taxon 283 | species | Decreases |
| 0 | 2 | Campylobacter sp. FOBRC14 | species | Decreases |
| 0 | 2 | Campylobacter sp. FOBRC15 | species | Decreases |
| 0 | 2 | Campylobacter sp. RM16704 | species | Decreases |
| 0 | 2 | Campylobacter vicugnae | species | Decreases |
| 0 | 2 | Candidatus Pseudomonas adelgestsugas | species | Decreases |
| 0 | 2 | Pseudomonas abietaniphila | species | Decreases |
| 0 | 2 | Pseudomonas agarici | species | Decreases |
| 0 | 2 | Pseudomonas alcaliphila | species | Decreases |
| 0 | 2 | Pseudomonas alkylphenolica | species | Decreases |
| 0 | 2 | Pseudomonas allokribbensis | species | Decreases |
| 0 | 2 | Pseudomonas alvandae | species | Decreases |
| 0 | 2 | Pseudomonas antarctica | species | Decreases |
| 0 | 2 | Pseudomonas anuradhapurensis | species | Decreases |
| 0 | 2 | Pseudomonas argentinensis | species | Decreases |
| 0 | 2 | Pseudomonas arsenicoxydans | species | Decreases |
| 0 | 2 | Pseudomonas asgharzadehiana | species | Decreases |
| 0 | 2 | Pseudomonas asiatica | species | Decreases |
| 0 | 2 | Pseudomonas asplenii | species | Decreases |
| 0 | 2 | Pseudomonas atacamensis | species | Decreases |
| 0 | 2 | Pseudomonas benzenivorans | species | Decreases |
| 0 | 2 | Pseudomonas bijieensis | species | Decreases |
| 0 | 2 | Pseudomonas brassicacearum | species | Decreases |
| 0 | 2 | Pseudomonas campi | species | Decreases |
| 0 | 2 | Pseudomonas canavaninivorans | species | Decreases |
| 0 | 2 | Pseudomonas cavernae | species | Decreases |
| 0 | 2 | Pseudomonas cerasi | species | Decreases |
| 0 | 2 | Pseudomonas cinnamophila | species | Decreases |
| 0 | 2 | Pseudomonas clemancea | species | Decreases |
| 0 | 2 | Pseudomonas collierea | species | Decreases |
| 0 | 2 | Pseudomonas cremoricolorata | species | Decreases |
| 0 | 2 | Pseudomonas deceptionensis | species | Decreases |
| 0 | 2 | Pseudomonas donghuensis | species | Decreases |
| 0 | 2 | Pseudomonas entomophila | species | Decreases |
| 0 | 2 | Pseudomonas eucalypticola | species | Decreases |
| 0 | 2 | Pseudomonas fakonensis | species | Decreases |
| 0 | 2 | Pseudomonas fitomaticsae | species | Decreases |
| 0 | 2 | Pseudomonas flexibilis | species | Decreases |
| 0 | 2 | Pseudomonas frederiksbergensis | species | Decreases |
| 0 | 2 | Pseudomonas gingeri | species | Decreases |
| 0 | 2 | Pseudomonas glycinae | species | Decreases |
| 0 | 2 | Pseudomonas gozinkensis | species | Decreases |
| 0 | 2 | Pseudomonas graminis | species | Decreases |
| 0 | 2 | Pseudomonas guangdongensis | species | Decreases |
| 0 | 2 | Pseudomonas guguanensis | species | Decreases |
| 0 | 2 | Pseudomonas guineae | species | Decreases |
| 0 | 2 | Pseudomonas hamedanensis | species | Decreases |
| 0 | 2 | Pseudomonas helleri | species | Decreases |
| 0 | 2 | Pseudomonas humi | species | Decreases |
| 0 | 2 | Pseudomonas hydrolytica | species | Decreases |
| 0 | 2 | Pseudomonas hygromyciniae | species | Decreases |
| 0 | 2 | Pseudomonas indoloxydans | species | Decreases |
| 0 | 2 | Pseudomonas insulae | species | Decreases |
| 0 | 2 | Pseudomonas izuensis | species | Decreases |
| 0 | 2 | Pseudomonas japonica | species | Decreases |
| 0 | 2 | Pseudomonas jessenii | species | Decreases |
| 0 | 2 | Pseudomonas juntendi | species | Decreases |
| 0 | 2 | Pseudomonas kermanshahensis | species | Decreases |
| 0 | 2 | Pseudomonas khazarica | species | Decreases |
| 0 | 2 | Pseudomonas kielensis | species | Decreases |
| 0 | 2 | Pseudomonas knackmussii | species | Decreases |
| 0 | 2 | Pseudomonas kribbensis | species | Decreases |
| 0 | 2 | Pseudomonas lalkuanensis | species | Decreases |
| 0 | 2 | Pseudomonas laurylsulfatiphila | species | Decreases |
| 0 | 2 | Pseudomonas lini | species | Decreases |
| 0 | 2 | Pseudomonas lurida | species | Decreases |
| 0 | 2 | Pseudomonas lutea | species | Decreases |
| 0 | 2 | Pseudomonas luteola | species | Decreases |
| 0 | 2 | Pseudomonas marincola | species | Decreases |
| 0 | 2 | Pseudomonas massiliensis | species | Decreases |
| 0 | 2 | Pseudomonas metavorans | species | Decreases |
| 0 | 2 | Pseudomonas monsensis | species | Decreases |
| 0 | 2 | Pseudomonas muyukensis | species | Decreases |
| 0 | 2 | Pseudomonas nitritireducens | species | Decreases |
| 0 | 2 | Pseudomonas nunensis | species | Decreases |
| 0 | 2 | Pseudomonas oryzae | species | Decreases |
| 0 | 2 | Pseudomonas otitidis | species | Decreases |
| 0 | 2 | Pseudomonas palleroniana | species | Decreases |
| 0 | 2 | Pseudomonas palmensis | species | Decreases |
| 0 | 2 | Pseudomonas panacis | species | Decreases |
| 0 | 2 | Pseudomonas panipatensis | species | Decreases |
| 0 | 2 | Pseudomonas parafulva | species | Decreases |
| 0 | 2 | Pseudomonas pohangensis | species | Decreases |
| 0 | 2 | Pseudomonas promysalinigenes | species | Decreases |
| 0 | 2 | Pseudomonas prosekii | species | Decreases |
| 0 | 2 | Pseudomonas qingdaonensis | species | Decreases |
| 0 | 2 | Pseudomonas reinekei | species | Decreases |
| 0 | 2 | Pseudomonas rhizophila | species | Decreases |
| 0 | 2 | Pseudomonas rhizosphaerae | species | Decreases |
| 0 | 2 | Pseudomonas saudimassiliensis | species | Decreases |
| 0 | 2 | Pseudomonas saudiphocaensis | species | Decreases |
| 0 | 2 | Pseudomonas sediminis | species | Decreases |
| 0 | 2 | Pseudomonas seleniipraecipitans | species | Decreases |
| 0 | 2 | Pseudomonas sichuanensis | species | Decreases |
| 0 | 2 | Pseudomonas sihuiensis | species | Decreases |
| 0 | 2 | Pseudomonas silesiensis | species | Decreases |
| 0 | 2 | Pseudomonas siliginis | species | Decreases |
| 0 | 2 | Pseudomonas simiae | species | Decreases |
| 0 | 2 | Pseudomonas soli | species | Decreases |
| 0 | 2 | Pseudomonas sp. R2A2 | species | Decreases |
| 0 | 2 | Pseudomonas taetrolens | species | Decreases |
| 0 | 2 | Pseudomonas teessidea | species | Decreases |
| 0 | 2 | Pseudomonas tensinigenes | species | Decreases |
| 0 | 2 | Pseudomonas thermotolerans | species | Decreases |
| 0 | 2 | Pseudomonas thivervalensis | species | Decreases |
| 0 | 2 | Pseudomonas tohonis | species | Decreases |
| 0 | 2 | Pseudomonas toyotomiensis | species | Decreases |
| 0 | 2 | Pseudomonas tritici | species | Decreases |
| 0 | 2 | Pseudomonas tropicalis | species | Decreases |
| 0 | 2 | Pseudomonas tructae | species | Decreases |
| 0 | 2 | Pseudomonas umsongensis | species | Decreases |
| 0 | 2 | Pseudomonas uvaldensis | species | Decreases |
| 0 | 2 | Pseudomonas vancouverensis | species | Decreases |
| 0 | 2 | Pseudomonas vanderleydeniana | species | Decreases |
| 0 | 2 | Pseudomonas versuta | species | Decreases |
| 0 | 2 | Pseudomonas viciae | species | Decreases |
| 0 | 2 | Pseudomonas wenzhouensis | species | Decreases |
| 0 | 2 | Pseudomonas xantholysinigenes | species | Decreases |
| 0 | 2 | Pseudomonas xanthosomatis | species | Decreases |
| 0 | 2 | Pseudomonas zarinae | species | Decreases |
| 0 | 2 | Pseudomonas zeae | species | Decreases |
| 0 | 2 | Rothia halotolerans | species | Decreases |
| 0 | 2 | Rothia koreensis | species | Decreases |
| 0 | 4 | [Butyribacterium] methylotrophicum | species | Decreases |
| 0 | 4 | Clostridium aceticum | species | Decreases |
| 0 | 4 | Clostridium acetireducens | species | Decreases |
| 0 | 4 | Clostridium acidisoli | species | Decreases |
| 0 | 4 | Clostridium aestuarii | species | Decreases |
| 0 | 4 | Clostridium akagii | species | Decreases |
| 0 | 4 | Clostridium algidicarnis | species | Decreases |
| 0 | 4 | Clostridium algifaecis | species | Decreases |
| 0 | 4 | Clostridium aminobutyricum | species | Decreases |
| 0 | 4 | Clostridium amylolyticum | species | Decreases |
| 0 | 4 | Clostridium aurantibutyricum | species | Decreases |
| 0 | 4 | Clostridium autoethanogenum | species | Decreases |
| 0 | 4 | Clostridium boliviensis | species | Decreases |
| 0 | 4 | Clostridium bovifaecis | species | Decreases |
| 0 | 4 | Clostridium bovipellis | species | Decreases |
| 0 | 4 | Clostridium bowmanii | species | Decreases |
| 0 | 4 | Clostridium caliptrosporum | species | Decreases |
| 0 | 4 | Clostridium carnis | species | Decreases |
| 0 | 4 | Clostridium cavendishii | species | Decreases |
| 0 | 4 | Clostridium celatum | species | Decreases |
| 0 | 4 | Clostridium chartatabidum | species | Decreases |
| 0 | 4 | Clostridium chromiireducens | species | Decreases |
| 0 | 4 | Clostridium colicanis | species | Decreases |
| 0 | 4 | Clostridium collagenovorans | species | Decreases |
| 0 | 4 | Clostridium combesii | species | Decreases |
| 0 | 4 | Clostridium culturomicium | species | Decreases |
| 0 | 4 | Clostridium cuniculi | species | Decreases |
| 0 | 4 | Clostridium cylindrosporum | species | Decreases |
| 0 | 4 | Clostridium diolis | species | Decreases |
| 0 | 4 | Clostridium drakei | species | Decreases |
| 0 | 4 | Clostridium facile | species | Decreases |
| 0 | 4 | Clostridium fallax | species | Decreases |
| 0 | 4 | Clostridium fessum | species | Decreases |
| 0 | 4 | Clostridium formicaceticum | species | Decreases |
| 0 | 4 | Clostridium frigidicarnis | species | Decreases |
| 0 | 4 | Clostridium frigoris | species | Decreases |
| 0 | 4 | Clostridium fungisolvens | species | Decreases |
| 0 | 4 | Clostridium fusiformis | species | Decreases |
| 0 | 4 | Clostridium ganghwense | species | Decreases |
| 0 | 4 | Clostridium grantii | species | Decreases |
| 0 | 4 | Clostridium haemolyticum | species | Decreases |
| 0 | 4 | Clostridium homopropionicum | species | Decreases |
| 0 | 4 | Clostridium hveragerdense | species | Decreases |
| 0 | 4 | Clostridium hydrogeniformans | species | Decreases |
| 0 | 4 | Clostridium jeddahitimonense | species | Decreases |
| 0 | 4 | Clostridium kogasense | species | Decreases |
| 0 | 4 | Clostridium lacusfryxellense | species | Decreases |
| 0 | 4 | Clostridium lentum | species | Decreases |
| 0 | 4 | Clostridium liquoris | species | Decreases |
| 0 | 4 | Clostridium ljungdahlii | species | Decreases |
| 0 | 4 | Clostridium longisporum | species | Decreases |
| 0 | 4 | Clostridium lundense | species | Decreases |
| 0 | 4 | Clostridium magnum | species | Decreases |
| 0 | 4 | Clostridium malenominatum | species | Decreases |
| 0 | 4 | Clostridium massiliamazoniense | species | Decreases |
| 0 | 4 | Clostridium merdae | species | Decreases |
| 0 | 4 | Clostridium minihomine | species | Decreases |
| 0 | 4 | Clostridium moniliforme | species | Decreases |
| 0 | 4 | Clostridium nigeriense | species | Decreases |
| 0 | 4 | Clostridium nitrophenolicum | species | Decreases |
| 0 | 4 | Clostridium novyi | species | Decreases |
| 0 | 4 | Clostridium oceanicum | species | Decreases |
| 0 | 4 | Clostridium oryzae | species | Decreases |
| 0 | 4 | Clostridium paraputrificum | species | Decreases |
| 0 | 4 | Clostridium paridis | species | Decreases |
| 0 | 4 | Clostridium phoceensis | species | Decreases |
| 0 | 4 | Clostridium polyendosporum | species | Decreases |
| 0 | 4 | Clostridium porci | species | Decreases |
| 0 | 4 | Clostridium putrefaciens | species | Decreases |
| 0 | 4 | Clostridium quinii | species | Decreases |
| 0 | 4 | Clostridium rhizosphaerae | species | Decreases |
| 0 | 4 | Clostridium ruminantium | species | Decreases |
| 0 | 4 | Clostridium sardiniense | species | Decreases |
| 0 | 4 | Clostridium sartagoforme | species | Decreases |
| 0 | 4 | Clostridium saudiense | species | Decreases |
| 0 | 4 | Clostridium schirmacherense | species | Decreases |
| 0 | 4 | Clostridium segne | species | Decreases |
| 0 | 4 | Clostridium senegalense | species | Decreases |
| 0 | 4 | Clostridium sp. AP-15 | species | Decreases |
| 0 | 4 | Clostridium sp. TF01-11 | species | Decreases |
| 0 | 4 | Clostridium subterminale | species | Decreases |
| 0 | 4 | Clostridium sulfidigenes | species | Decreases |
| 0 | 4 | Clostridium swellfunianum | species | Decreases |
| 0 | 4 | Clostridium tagluense | species | Decreases |
| 0 | 4 | Clostridium tarantellae | species | Decreases |
| 0 | 4 | Clostridium tepidiprofundi | species | Decreases |
| 0 | 4 | Clostridium tepidum | species | Decreases |
| 0 | 4 | Clostridium tertium | species | Decreases |
| 0 | 4 | Clostridium tetanomorphum | species | Decreases |
| 0 | 4 | Clostridium thermoamylolyticum | species | Decreases |
| 0 | 4 | Clostridium thermobutyricum | species | Decreases |
| 0 | 4 | Clostridium thermopalmarium | species | Decreases |
| 0 | 4 | Clostridium thiosulfatireducens | species | Decreases |
| 0 | 4 | Clostridium tunisiense | species | Decreases |
| 0 | 4 | Clostridium uliginosum | species | Decreases |
| 0 | 4 | Clostridium vincentii | species | Decreases |
| 0 | 4 | Clostridium vulturis | species | Decreases |
| 0 | 4 | Faecalispora jeddahensis | species | Decreases |
| 0 | 4 | Streptococcus azizii | species | Decreases |
| 0 | 4 | Streptococcus caballi | species | Decreases |
| 0 | 4 | Streptococcus castoreus | species | Decreases |
| 0 | 4 | Streptococcus chenjunshii | species | Decreases |
| 0 | 4 | Streptococcus chosunense | species | Decreases |
| 0 | 4 | Streptococcus criceti | species | Decreases |
| 0 | 4 | Streptococcus dentapri | species | Decreases |
| 0 | 4 | Streptococcus dentasini | species | Decreases |
| 0 | 4 | Streptococcus dentirousetti | species | Decreases |
| 0 | 4 | Streptococcus devriesei | species | Decreases |
| 0 | 4 | Streptococcus didelphis | species | Decreases |
| 0 | 4 | Streptococcus downei | species | Decreases |
| 0 | 4 | Streptococcus entericus | species | Decreases |
| 0 | 4 | Streptococcus fryi | species | Decreases |
| 0 | 4 | Streptococcus gallinaceus | species | Decreases |
| 0 | 4 | Streptococcus halichoeri | species | Decreases |
| 0 | 4 | Streptococcus halotolerans | species | Decreases |
| 0 | 4 | Streptococcus henryi | species | Decreases |
| 0 | 4 | Streptococcus hongkongensis | species | Decreases |
| 0 | 4 | Streptococcus hyointestinalis | species | Decreases |
| 0 | 4 | Streptococcus hyovaginalis | species | Decreases |
| 0 | 4 | Streptococcus ictaluri | species | Decreases |
| 0 | 4 | Streptococcus macacae | species | Decreases |
| 0 | 4 | Streptococcus marimammalium | species | Decreases |
| 0 | 4 | Streptococcus marmotae | species | Decreases |
| 0 | 4 | Streptococcus massiliensis | species | Decreases |
| 0 | 4 | Streptococcus minor | species | Decreases |
| 0 | 4 | Streptococcus orisasini | species | Decreases |
| 0 | 4 | Streptococcus orisratti | species | Decreases |
| 0 | 4 | Streptococcus orisuis | species | Decreases |
| 0 | 4 | Streptococcus ovis | species | Decreases |
| 0 | 4 | Streptococcus panodentis | species | Decreases |
| 0 | 4 | Streptococcus pantholopis | species | Decreases |
| 0 | 4 | Streptococcus pasteuri | species | Decreases |
| 0 | 4 | Streptococcus peroris | species | Decreases |
| 0 | 4 | Streptococcus phocae | species | Decreases |
| 0 | 4 | Streptococcus plurextorum | species | Decreases |
| 0 | 4 | Streptococcus porci | species | Decreases |
| 0 | 4 | Streptococcus porcorum | species | Decreases |
| 0 | 4 | Streptococcus respiraculi | species | Decreases |
| 0 | 4 | Streptococcus rupicaprae | species | Decreases |
| 0 | 4 | Streptococcus seminale | species | Decreases |
| 0 | 4 | Streptococcus shenyangsis | species | Decreases |
| 0 | 4 | Streptococcus sinensis | species | Decreases |
| 0 | 4 | Streptococcus symci | species | Decreases |
| 0 | 4 | Streptococcus thoraltensis | species | Decreases |
| 0 | 4 | Streptococcus timonensis | species | Decreases |
| 0 | 4 | Streptococcus troglodytidis | species | Decreases |
| 0 | 4 | Streptococcus ursoris | species | Decreases |
| 0 | 4 | Streptococcus vaginalis | species | Decreases |
| 0 | 4 | Streptococcus viridans | species | Decreases |
| 0 | 4 | Streptococcus vulneris | species | Decreases |
| 0 | 4 | Streptococcus xiaochunlingii | species | Decreases |
| 0 | 4 | Streptococcus australis | species | Decreases |
| 0 | 2 | Pseudomonas psychrotolerans | species | Decreases |
| 0 | 4 | Streptococcus lactarius | species | Decreases |
| 1 | 1 | Rothia amarae | species | Decreases |
| 1 | 0 | Bacillus cytotoxicus | species | Decreases |
| 1 | 0 | Brucella rhizosphaerae | species | Decreases |
| 1 | 0 | Burkholderia pseudomultivorans | species | Decreases |
| 1 | 0 | Chiayiivirga flava | species | Decreases |
| 0 | 3 | Clostridium islandicum | species | Decreases |
| 1 | 0 | Corynebacterium casei | species | Decreases |
| 1 | 0 | Dokdonella immobilis | species | Decreases |
| 1 | 0 | Hyphomicrobium zavarzinii | species | Decreases |
| 1 | 0 | Jeotgalicoccus nanhaiensis | species | Decreases |
| 1 | 0 | Kocuria varians | species | Decreases |
| 1 | 0 | Melissococcus plutonius | species | Decreases |
| 1 | 0 | Pseudomonas aeruginosa | species | Decreases |
| 1 | 0 | Romboutsia ilealis | species | Decreases |
| 1 | 0 | Rosenbergiella australiborealis | species | Decreases |
| 0 | 4 | Streptococcus vestibularis | species | Decreases |
| 0 | 1 | Macrococcoides caseolyticum | species | Decreases |
| 0 | 4 | Clostridium fermenticellae | species | Decreases |
| 1 | 3 | Streptococcus sanguinis | species | Decreases |
| 0 | 1 | Klebsiella pneumoniae | species | Decreases |
| 0 | 2 | Pseudomonas extremaustralis | species | Decreases |
| 1 | 3 | Streptococcus rubneri | species | Decreases |
| 0 | 1 | Lactococcus lactis | species | Decreases |
| 0 | 4 | Clostridium intestinale | species | Decreases |
| 0 | 4 | Streptococcus mitis | species | Decreases |
| 0 | 1 | Veillonella dispar | species | Decreases |
| 0 | 1 | Veillonella nakazawae | species | Decreases |
| 0 | 4 | Clostridium acetobutylicum | species | Decreases |
| 0 | 4 | Streptococcus gordonii | species | Decreases |
| 0 | 4 | Clostridium saccharobutylicum | species | Decreases |
| 2 | 1 | Campylobacter jejuni | species | Decreases |
| 0 | 1 | Veillonella rogosae | species | Decreases |
| 1 | 1 | Rothia endophytica | species | Decreases |
| 1 | 1 | Rothia nasimurium | species | Decreases |
| 0 | 4 | Streptococcus pneumoniae | species | Decreases |
| 0 | 4 | Clostridium cadaveris | species | Decreases |
| 0 | 1 | Erwinia tracheiphila | species | Decreases |
| 0 | 4 | Streptococcus troglodytae | species | Decreases |
| 0 | 1 | Kocuria rosea | species | Decreases |
| 0 | 4 | Streptococcus infantis | species | Decreases |
| 0 | 2 | Pseudomonas yamanorum | species | Decreases |
| 0 | 4 | Clostridium gasigenes | species | Decreases |
| 0 | 1 | Lactococcus cremoris | species | Decreases |
| 0 | 4 | Streptococcus oriscaviae | species | Decreases |
| 0 | 4 | Streptococcus gwangjuense | species | Decreases |
| 1 | 3 | Streptococcus oralis | species | Decreases |
| 0 | 4 | Streptococcus ilei | species | Decreases |
| 0 | 1 | Veillonella atypica | species | Decreases |
| 0 | 4 | Clostridium cellulovorans | species | Decreases |
| 0 | 4 | Clostridium taeniosporum | species | Decreases |
| 0 | 4 | Streptococcus pseudopneumoniae | species | Decreases |
| 0 | 2 | Pseudomonas vranovensis | species | Decreases |
| 0 | 1 | Romboutsia hominis | species | Decreases |
| 0 | 1 | Corynebacterium durum | species | Decreases |
| 0 | 1 | Kocuria rhizophila | species | Decreases |
| 1 | 2 | Enterococcus hirae | species | Decreases |
| 0 | 4 | Streptococcus ratti | species | Decreases |
| 0 | 4 | Clostridium argentinense | species | Decreases |
| 0 | 3 | Campylobacter coli | species | Decreases |
| 1 | 0 | Citrobacter koseri | species | Decreases |
| 1 | 0 | Erwinia oleae | species | Decreases |
| 2 | 0 | Escherichia coli | species | Decreases |
| 1 | 0 | Macrococcus brunensis | species | Decreases |
| 1 | 0 | Romboutsia sedimentorum | species | Decreases |
| 1 | 0 | Shigella dysenteriae | species | Decreases |
| 1 | 18 | Bifidobacterium animalis | species | Decreases |
| 0 | 4 | Streptococcus koreensis | species | Decreases |
| 0 | 4 | Clostridium sporogenes | species | Decreases |
| 0 | 1 | Klebsiella quasipneumoniae | species | Decreases |
| 0 | 1 | [Brevibacterium] flavum | species | Decreases |
| 0 | 1 | [Pantoea] beijingensis | species | Decreases |
| 0 | 1 | Arthrobacter agilis | species | Decreases |
| 0 | 1 | Arthrobacter antioxidans | species | Decreases |
| 0 | 1 | Arthrobacter caoxuetaonis | species | Decreases |
| 0 | 1 | Arthrobacter citreus | species | Decreases |
| 0 | 1 | Arthrobacter crystallopoietes | species | Decreases |
| 0 | 1 | Arthrobacter dokdonellae | species | Decreases |
| 0 | 1 | Arthrobacter gengyunqii | species | Decreases |
| 0 | 1 | Arthrobacter glacialis | species | Decreases |
| 0 | 1 | Arthrobacter globiformis | species | Decreases |
| 0 | 1 | Arthrobacter jiangjiafuii | species | Decreases |
| 0 | 1 | Arthrobacter koreensis | species | Decreases |
| 0 | 1 | Arthrobacter liuii | species | Decreases |
| 0 | 1 | Arthrobacter pascens | species | Decreases |
| 0 | 1 | Arthrobacter polaris | species | Decreases |
| 0 | 1 | Arthrobacter psychrochitiniphilus | species | Decreases |
| 0 | 1 | Arthrobacter psychrolactophilus | species | Decreases |
| 0 | 1 | Arthrobacter saudimassiliensis | species | Decreases |
| 0 | 1 | Arthrobacter sulfonylureivorans | species | Decreases |
| 0 | 1 | Arthrobacter sunyaminii | species | Decreases |
| 0 | 1 | Arthrobacter woluwensis | species | Decreases |
| 0 | 1 | Arthrobacter zhangbolii | species | Decreases |
| 0 | 1 | Atopomonas hussainii | species | Decreases |
| 0 | 3 | Campylobacter armoricus | species | Decreases |
| 0 | 3 | Campylobacter avium | species | Decreases |
| 0 | 3 | Campylobacter blaseri | species | Decreases |
| 0 | 3 | Campylobacter canadensis | species | Decreases |
| 0 | 3 | Campylobacter cuniculorum | species | Decreases |
| 0 | 3 | Campylobacter faecalis | species | Decreases |
| 0 | 3 | Campylobacter felis | species | Decreases |
| 0 | 3 | Campylobacter helveticus | species | Decreases |
| 0 | 3 | Campylobacter hepaticus | species | Decreases |
| 0 | 3 | Campylobacter hyointestinalis | species | Decreases |
| 0 | 3 | Campylobacter iguaniorum | species | Decreases |
| 0 | 3 | Campylobacter insulaenigrae | species | Decreases |
| 0 | 3 | Campylobacter jejuni-like bacterium | species | Decreases |
| 0 | 3 | Campylobacter lanienae | species | Decreases |
| 0 | 3 | Campylobacter mucosalis | species | Decreases |
| 0 | 3 | Campylobacter novaezeelandiae | species | Decreases |
| 0 | 3 | Campylobacter ornithocola | species | Decreases |
| 0 | 3 | Campylobacter peloridis | species | Decreases |
| 0 | 3 | Campylobacter pinnipediorum | species | Decreases |
| 0 | 3 | Campylobacter sp. NCTC 13003 | species | Decreases |
| 0 | 3 | Campylobacter sputorum | species | Decreases |
| 0 | 3 | Campylobacter subantarcticus | species | Decreases |
| 0 | 3 | Campylobacter troglodytis | species | Decreases |
| 0 | 3 | Campylobacter upsaliensis | species | Decreases |
| 0 | 3 | Campylobacter volucris | species | Decreases |
| 0 | 3 | Campylobacter vulpis | species | Decreases |
| 0 | 3 | Candidatus Campylobacter infans | species | Decreases |
| 0 | 1 | Candidatus Parasutterella gallistercoris | species | Decreases |
| 0 | 1 | Citrobacter europaeus | species | Decreases |
| 0 | 1 | Citrobacter telavivensis | species | Decreases |
| 0 | 1 | Corynebacterium acetoacidophilum | species | Decreases |
| 0 | 1 | Corynebacterium ammoniagenes | species | Decreases |
| 0 | 1 | Corynebacterium anserum | species | Decreases |
| 0 | 1 | Corynebacterium appendicis | species | Decreases |
| 0 | 1 | Corynebacterium aquatimens | species | Decreases |
| 0 | 1 | Corynebacterium aquilae | species | Decreases |
| 0 | 1 | Corynebacterium auris | species | Decreases |
| 0 | 1 | Corynebacterium bovis | species | Decreases |
| 0 | 1 | Corynebacterium camporealensis | species | Decreases |
| 0 | 1 | Corynebacterium canis | species | Decreases |
| 0 | 1 | Corynebacterium capitovis | species | Decreases |
| 0 | 1 | Corynebacterium caspium | species | Decreases |
| 0 | 1 | Corynebacterium ciconiae | species | Decreases |
| 0 | 1 | Corynebacterium comes | species | Decreases |
| 0 | 1 | Corynebacterium crudilactis | species | Decreases |
| 0 | 1 | Corynebacterium cystitidis | species | Decreases |
| 0 | 1 | Corynebacterium dentalis | species | Decreases |
| 0 | 1 | Corynebacterium deserti | species | Decreases |
| 0 | 1 | Corynebacterium doosanense | species | Decreases |
| 0 | 1 | Corynebacterium efficiens | species | Decreases |
| 0 | 1 | Corynebacterium endometrii | species | Decreases |
| 0 | 1 | Corynebacterium epidermidicanis | species | Decreases |
| 0 | 1 | Corynebacterium fastidiosum | species | Decreases |
| 0 | 1 | Corynebacterium felinum | species | Decreases |
| 0 | 1 | Corynebacterium frankenforstense | species | Decreases |
| 0 | 1 | Corynebacterium freiburgense | species | Decreases |
| 0 | 1 | Corynebacterium freneyi | species | Decreases |
| 0 | 1 | Corynebacterium genitalium | species | Decreases |
| 0 | 1 | Corynebacterium gerontici | species | Decreases |
| 0 | 1 | Corynebacterium glaucum | species | Decreases |
| 0 | 1 | Corynebacterium glyciniphilum | species | Decreases |
| 0 | 1 | Corynebacterium halotolerans | species | Decreases |
| 0 | 1 | Corynebacterium hansenii | species | Decreases |
| 0 | 1 | Corynebacterium heidelbergense | species | Decreases |
| 0 | 1 | Corynebacterium hindlerae | species | Decreases |
| 0 | 1 | Corynebacterium humireducens | species | Decreases |
| 0 | 1 | Corynebacterium ihumii | species | Decreases |
| 0 | 1 | Corynebacterium jeddahense | species | Decreases |
| 0 | 1 | Corynebacterium kalinowskii | species | Decreases |
| 0 | 1 | Corynebacterium kutscheri | species | Decreases |
| 0 | 1 | Corynebacterium lactis | species | Decreases |
| 0 | 1 | Corynebacterium liangguodongii | species | Decreases |
| 0 | 1 | Corynebacterium lipophiloflavum | species | Decreases |
| 0 | 1 | Corynebacterium lizhenjunii | species | Decreases |
| 0 | 1 | Corynebacterium lubricantis | species | Decreases |
| 0 | 1 | Corynebacterium lujinxingii | species | Decreases |
| 0 | 1 | Corynebacterium marinum | species | Decreases |
| 0 | 1 | Corynebacterium maris | species | Decreases |
| 0 | 1 | Corynebacterium mastitidis | species | Decreases |
| 0 | 1 | Corynebacterium mucifaciens | species | Decreases |
| 0 | 1 | Corynebacterium mustelae | species | Decreases |
| 0 | 1 | Corynebacterium mycetoides | species | Decreases |
| 0 | 1 | Corynebacterium occultum | species | Decreases |
| 0 | 1 | Corynebacterium otitidis | species | Decreases |
| 0 | 1 | Corynebacterium pelargi | species | Decreases |
| 0 | 1 | Corynebacterium phocae | species | Decreases |
| 0 | 1 | Corynebacterium pilosum | species | Decreases |
| 0 | 1 | Corynebacterium poyangense | species | Decreases |
| 0 | 1 | Corynebacterium pseudopelargi | species | Decreases |
| 0 | 1 | Corynebacterium pseudotuberculosis | species | Decreases |
| 0 | 1 | Corynebacterium pyruviciproducens | species | Decreases |
| 0 | 1 | Corynebacterium qintianiae | species | Decreases |
| 0 | 1 | Corynebacterium ramonii | species | Decreases |
| 0 | 1 | Corynebacterium renale | species | Decreases |
| 0 | 1 | Corynebacterium rouxii | species | Decreases |
| 0 | 1 | Corynebacterium segmentosum | species | Decreases |
| 0 | 1 | Corynebacterium silvaticum | species | Decreases |
| 0 | 1 | Corynebacterium sp. NML00-0156 | species | Decreases |
| 0 | 1 | Corynebacterium sphenisci | species | Decreases |
| 0 | 1 | Corynebacterium spheniscorum | species | Decreases |
| 0 | 1 | Corynebacterium suicordis | species | Decreases |
| 0 | 1 | Corynebacterium sundsvallense | species | Decreases |
| 0 | 1 | Corynebacterium thomssenii | species | Decreases |
| 0 | 1 | Corynebacterium trachiae | species | Decreases |
| 0 | 1 | Corynebacterium tuscaniense | species | Decreases |
| 0 | 1 | Corynebacterium uberis | species | Decreases |
| 0 | 1 | Corynebacterium ulcerans | species | Decreases |
| 0 | 1 | Corynebacterium ulceribovis | species | Decreases |
| 0 | 1 | Corynebacterium urealyticum | species | Decreases |
| 0 | 1 | Corynebacterium urogenitale | species | Decreases |
| 0 | 1 | Corynebacterium uterequi | species | Decreases |
| 0 | 1 | Corynebacterium yudongzhengii | species | Decreases |
| 0 | 1 | Corynebacterium zhongnanshanii | species | Decreases |
| 0 | 1 | Dokdonella fugitiva | species | Decreases |
| 0 | 1 | Dokdonella koreensis | species | Decreases |
| 0 | 3 | Enterococcus alcedinis | species | Decreases |
| 0 | 3 | Enterococcus aquimarinus | species | Decreases |
| 0 | 3 | Enterococcus camelliae | species | Decreases |
| 0 | 3 | Enterococcus canis | species | Decreases |
| 0 | 3 | Enterococcus columbae | species | Decreases |
| 0 | 3 | Enterococcus devriesei | species | Decreases |
| 0 | 3 | Enterococcus diestrammenae | species | Decreases |
| 0 | 3 | Enterococcus haemoperoxidus | species | Decreases |
| 0 | 3 | Enterococcus hawaiiensis | species | Decreases |
| 0 | 3 | Enterococcus hermanniensis | species | Decreases |
| 0 | 3 | Enterococcus italicus | species | Decreases |
| 0 | 3 | Enterococcus malodoratus | species | Decreases |
| 0 | 3 | Enterococcus pallens | species | Decreases |
| 0 | 3 | Enterococcus pernyi | species | Decreases |
| 0 | 3 | Enterococcus pseudoavium | species | Decreases |
| 0 | 3 | Enterococcus quebecensis | species | Decreases |
| 0 | 3 | Enterococcus rotai | species | Decreases |
| 0 | 3 | Enterococcus silesiacus | species | Decreases |
| 0 | 3 | Enterococcus spodopteracolus | species | Decreases |
| 0 | 3 | Enterococcus sulfureus | species | Decreases |
| 0 | 3 | Enterococcus ureasiticus | species | Decreases |
| 0 | 3 | Enterococcus wangshanyuanii | species | Decreases |
| 0 | 1 | Entomomonas moraniae | species | Decreases |
| 0 | 1 | Erwinia aphidicola | species | Decreases |
| 0 | 1 | Erwinia billingiae | species | Decreases |
| 0 | 1 | Erwinia mallotivora | species | Decreases |
| 0 | 1 | Erwinia papayae | species | Decreases |
| 0 | 1 | Erwinia piriflorinigrans | species | Decreases |
| 0 | 1 | Erwinia psidii | species | Decreases |
| 0 | 1 | Erwinia pyrifoliae | species | Decreases |
| 0 | 1 | Erwinia rhapontici | species | Decreases |
| 0 | 1 | Erwinia soli | species | Decreases |
| 0 | 1 | Erwinia sorbitola | species | Decreases |
| 0 | 1 | Erwinia tasmaniensis | species | Decreases |
| 0 | 1 | Erwinia typographi | species | Decreases |
| 0 | 1 | Erwinia uzenensis | species | Decreases |
| 0 | 1 | Faecalimicrobium dakarense | species | Decreases |
| 0 | 1 | Flavobacterium aestivum | species | Decreases |
| 0 | 1 | Flavobacterium akiainvivens | species | Decreases |
| 0 | 1 | Flavobacterium album | species | Decreases |
| 0 | 1 | Flavobacterium algicola | species | Decreases |
| 0 | 1 | Flavobacterium alkalisoli | species | Decreases |
| 0 | 1 | Flavobacterium ammoniigenes | species | Decreases |
| 0 | 1 | Flavobacterium anhuiense | species | Decreases |
| 0 | 1 | Flavobacterium antarcticum | species | Decreases |
| 0 | 1 | Flavobacterium aquaticum | species | Decreases |
| 0 | 1 | Flavobacterium aquatile | species | Decreases |
| 0 | 1 | Flavobacterium arcticum | species | Decreases |
| 0 | 1 | Flavobacterium arsenatis | species | Decreases |
| 0 | 1 | Flavobacterium azooxidireducens | species | Decreases |
| 0 | 1 | Flavobacterium bernardetii | species | Decreases |
| 0 | 1 | Flavobacterium bizetiae | species | Decreases |
| 0 | 1 | Flavobacterium branchiicola | species | Decreases |
| 0 | 1 | Flavobacterium branchiophilum | species | Decreases |
| 0 | 1 | Flavobacterium caeni | species | Decreases |
| 0 | 1 | Flavobacterium cauense | species | Decreases |
| 0 | 1 | Flavobacterium cerinum | species | Decreases |
| 0 | 1 | Flavobacterium channae | species | Decreases |
| 0 | 1 | Flavobacterium cheniae | species | Decreases |
| 0 | 1 | Flavobacterium collinsii | species | Decreases |
| 0 | 1 | Flavobacterium columnare | species | Decreases |
| 0 | 1 | Flavobacterium commune | species | Decreases |
| 0 | 1 | Flavobacterium compostarboris | species | Decreases |
| 0 | 1 | Flavobacterium covae | species | Decreases |
| 0 | 1 | Flavobacterium crassostreae | species | Decreases |
| 0 | 1 | Flavobacterium croceum | species | Decreases |
| 0 | 1 | Flavobacterium crocinum | species | Decreases |
| 0 | 1 | Flavobacterium cyclinae | species | Decreases |
| 0 | 1 | Flavobacterium defluvii | species | Decreases |
| 0 | 1 | Flavobacterium denitrificans | species | Decreases |
| 0 | 1 | Flavobacterium endoglycinae | species | Decreases |
| 0 | 1 | Flavobacterium enshiense | species | Decreases |
| 0 | 1 | Flavobacterium faecale | species | Decreases |
| 0 | 1 | Flavobacterium filum | species | Decreases |
| 0 | 1 | Flavobacterium flevense | species | Decreases |
| 0 | 1 | Flavobacterium fluviale | species | Decreases |
| 0 | 1 | Flavobacterium gelidilacus | species | Decreases |
| 0 | 1 | Flavobacterium gilvum | species | Decreases |
| 0 | 1 | Flavobacterium ginsengisoli | species | Decreases |
| 0 | 1 | Flavobacterium glycines | species | Decreases |
| 0 | 1 | Flavobacterium gyeonganense | species | Decreases |
| 0 | 1 | Flavobacterium haoranii | species | Decreases |
| 0 | 1 | Flavobacterium humidisoli | species | Decreases |
| 0 | 1 | Flavobacterium indicum | species | Decreases |
| 0 | 1 | Flavobacterium inviolabile | species | Decreases |
| 0 | 1 | Flavobacterium johnsoniae | species | Decreases |
| 0 | 1 | Flavobacterium jumunjinense | species | Decreases |
| 0 | 1 | Flavobacterium kamogawaensis | species | Decreases |
| 0 | 1 | Flavobacterium kingsejongi | species | Decreases |
| 0 | 1 | Flavobacterium limicola | species | Decreases |
| 0 | 1 | Flavobacterium lindanitolerans | species | Decreases |
| 0 | 1 | Flavobacterium litorale | species | Decreases |
| 0 | 1 | Flavobacterium longum | species | Decreases |
| 0 | 1 | Flavobacterium luteolum | species | Decreases |
| 0 | 1 | Flavobacterium magnum | species | Decreases |
| 0 | 1 | Flavobacterium micromati | species | Decreases |
| 0 | 1 | Flavobacterium nackdongense | species | Decreases |
| 0 | 1 | Flavobacterium nitratireducens | species | Decreases |
| 0 | 1 | Flavobacterium nitrogenifigens | species | Decreases |
| 0 | 1 | Flavobacterium okayamense | species | Decreases |
| 0 | 1 | Flavobacterium omnivorum | species | Decreases |
| 0 | 1 | Flavobacterium oreochromis | species | Decreases |
| 0 | 1 | Flavobacterium pallidum | species | Decreases |
| 0 | 1 | Flavobacterium pectinovorum | species | Decreases |
| 0 | 1 | Flavobacterium procerum | species | Decreases |
| 0 | 1 | Flavobacterium psychrophilum | species | Decreases |
| 0 | 1 | Flavobacterium rakeshii | species | Decreases |
| 0 | 1 | Flavobacterium rivuli | species | Decreases |
| 0 | 1 | Flavobacterium sangjuense | species | Decreases |
| 0 | 1 | Flavobacterium sasangense | species | Decreases |
| 0 | 1 | Flavobacterium sediminis | species | Decreases |
| 0 | 1 | Flavobacterium soli | species | Decreases |
| 0 | 1 | Flavobacterium subsaxonicum | species | Decreases |
| 0 | 1 | Flavobacterium succinicans | species | Decreases |
| 0 | 1 | Flavobacterium suncheonense | species | Decreases |
| 0 | 1 | Flavobacterium swingsii | species | Decreases |
| 0 | 1 | Flavobacterium terrae | species | Decreases |
| 0 | 1 | Flavobacterium terrigena | species | Decreases |
| 0 | 1 | Flavobacterium weaverense | species | Decreases |
| 0 | 1 | Flavobacterium yanchengense | species | Decreases |
| 0 | 1 | Halopseudomonas litoralis | species | Decreases |
| 0 | 1 | Halopseudomonas nanhaiensis | species | Decreases |
| 0 | 1 | Halopseudomonas pachastrellae | species | Decreases |
| 0 | 1 | Halopseudomonas pelagia | species | Decreases |
| 0 | 1 | Halopseudomonas phragmitis | species | Decreases |
| 0 | 1 | Halopseudomonas sabulinigri | species | Decreases |
| 0 | 1 | Halopseudomonas salegens | species | Decreases |
| 0 | 1 | Halopseudomonas xinjiangensis | species | Decreases |
| 0 | 1 | Klebsiella cf. planticola B43 | species | Decreases |
| 0 | 1 | Klebsiella granulomatis | species | Decreases |
| 0 | 1 | Kocuria assamensis | species | Decreases |
| 0 | 1 | Kocuria flava | species | Decreases |
| 0 | 1 | Kocuria gwangalliensis | species | Decreases |
| 0 | 1 | Kocuria himachalensis | species | Decreases |
| 0 | 1 | Kocuria indica | species | Decreases |
| 0 | 1 | Kocuria marina | species | Decreases |
| 0 | 1 | Kocuria turfanensis | species | Decreases |
| 0 | 1 | Lactococcus allomyrinae | species | Decreases |
| 0 | 1 | Lactococcus fujiensis | species | Decreases |
| 0 | 1 | Lactococcus hircilactis | species | Decreases |
| 0 | 1 | Lactococcus laudensis | species | Decreases |
| 0 | 1 | Lactococcus plantarum | species | Decreases |
| 0 | 1 | Lactococcus protaetiae | species | Decreases |
| 0 | 1 | Macrococcoides bohemicum | species | Decreases |
| 0 | 1 | Macrococcus armenti | species | Decreases |
| 0 | 1 | Macrococcus bovicus | species | Decreases |
| 0 | 1 | Macrococcus epidermidis | species | Decreases |
| 0 | 1 | Macrococcus equipercicus | species | Decreases |
| 0 | 1 | Macrococcus hajekii | species | Decreases |
| 0 | 1 | Macrococcus lamae | species | Decreases |
| 0 | 1 | Parasutterella excrementihominis | species | Decreases |
| 0 | 1 | Parasutterella secunda | species | Decreases |
| 0 | 1 | Pseudomonas alcaligenes | species | Decreases |
| 0 | 1 | Pseudomonas anguilliseptica | species | Decreases |
| 0 | 1 | Pseudomonas caricapapayae | species | Decreases |
| 0 | 1 | Pseudomonas citronellolis | species | Decreases |
| 0 | 1 | Pseudomonas granadensis | species | Decreases |
| 0 | 1 | Pseudomonas jinjuensis | species | Decreases |
| 0 | 1 | Pseudomonas koreensis | species | Decreases |
| 0 | 1 | Pseudomonas lundensis | species | Decreases |
| 0 | 1 | Pseudomonas mendocina | species | Decreases |
| 0 | 1 | Pseudomonas moraviensis | species | Decreases |
| 0 | 1 | Pseudomonas paraeruginosa | species | Decreases |
| 0 | 1 | Pseudomonas poae | species | Decreases |
| 0 | 1 | Pseudomonas proteolytica | species | Decreases |
| 0 | 1 | Pseudomonas resinovorans | species | Decreases |
| 0 | 1 | Pseudomonas saponiphila | species | Decreases |
| 0 | 1 | Pseudomonas sessilinigenes | species | Decreases |
| 0 | 1 | Pseudomonas sp. | species | Decreases |
| 0 | 1 | Pseudomonas sp. 02C 26 | species | Decreases |
| 0 | 1 | Pseudomonas sp. 108Z1 | species | Decreases |
| 0 | 1 | Pseudomonas sp. 31-12 | species | Decreases |
| 0 | 1 | Pseudomonas sp. 7SR1 | species | Decreases |
| 0 | 1 | Pseudomonas sp. a101-18-2 | species | Decreases |
| 0 | 1 | Pseudomonas sp. a111-5 | species | Decreases |
| 0 | 1 | Pseudomonas sp. ACM7 | species | Decreases |
| 0 | 1 | Pseudomonas sp. ATCC 13867 | species | Decreases |
| 0 | 1 | Pseudomonas sp. CC6-YY-74 | species | Decreases |
| 0 | 1 | Pseudomonas sp. CCOS 191 | species | Decreases |
| 0 | 1 | Pseudomonas sp. CMR5c | species | Decreases |
| 0 | 1 | Pseudomonas sp. cn4902 | species | Decreases |
| 0 | 1 | Pseudomonas sp. DQ-01 | species | Decreases |
| 0 | 1 | Pseudomonas sp. DTU12.3 | species | Decreases |
| 0 | 1 | Pseudomonas sp. DY-1 | species | Decreases |
| 0 | 1 | Pseudomonas sp. G1116 | species | Decreases |
| 0 | 1 | Pseudomonas sp. GmFRB023 | species | Decreases |
| 0 | 1 | Pseudomonas sp. HB02 | species | Decreases |
| 0 | 1 | Pseudomonas sp. KB23 | species | Decreases |
| 0 | 1 | Pseudomonas sp. KVS86 | species | Decreases |
| 0 | 1 | Pseudomonas sp. LH1G9 | species | Decreases |
| 0 | 1 | Pseudomonas sp. LPH1 | species | Decreases |
| 0 | 1 | Pseudomonas sp. LTJR-52 | species | Decreases |
| 0 | 1 | Pseudomonas sp. M_36 | species | Decreases |
| 0 | 1 | Pseudomonas sp. MFY143 | species | Decreases |
| 0 | 1 | Pseudomonas sp. MRSN 12121 | species | Decreases |
| 0 | 1 | Pseudomonas sp. MT-1 | species | Decreases |
| 0 | 1 | Pseudomonas sp. NS1(2017) | species | Decreases |
| 0 | 1 | Pseudomonas sp. Os17 | species | Decreases |
| 0 | 1 | Pseudomonas sp. PcFRB072 | species | Decreases |
| 0 | 1 | Pseudomonas sp. PcFRB119 | species | Decreases |
| 0 | 1 | Pseudomonas sp. PONIH3 | species | Decreases |
| 0 | 1 | Pseudomonas sp. ps4-2 | species | Decreases |
| 0 | 1 | Pseudomonas sp. PsF | species | Decreases |
| 0 | 1 | Pseudomonas sp. PsG | species | Decreases |
| 0 | 1 | Pseudomonas sp. R4-34-07 | species | Decreases |
| 0 | 1 | Pseudomonas sp. R5-89-07 | species | Decreases |
| 0 | 1 | Pseudomonas sp. RU47 | species | Decreases |
| 0 | 1 | Pseudomonas sp. StFLB209 | species | Decreases |
| 0 | 1 | Pseudomonas sp. SWI36 | species | Decreases |
| 0 | 1 | Pseudomonas sp. TCU-HL1 | species | Decreases |
| 0 | 1 | Pseudomonas sp. TKP | species | Decreases |
| 0 | 1 | Pseudomonas sp. TMW 2.1634 | species | Decreases |
| 0 | 1 | Pseudomonas sp. URMO17WK12:I11 | species | Decreases |
| 0 | 1 | Pseudomonas sp. UW4 | species | Decreases |
| 0 | 1 | Pseudomonas sp. VLB120 | species | Decreases |
| 0 | 1 | Pseudomonas sp. WCS374 | species | Decreases |
| 0 | 1 | Pseudomonas straminea | species | Decreases |
| 0 | 1 | Pseudomonas syncyanea | species | Decreases |
| 0 | 1 | Pseudomonas tremae | species | Decreases |
| 0 | 1 | Pseudomonas veronii | species | Decreases |
| 0 | 1 | Romboutsia lituseburensis | species | Decreases |
| 0 | 1 | Romboutsia timonensis | species | Decreases |
| 0 | 1 | Shewanella acanthi | species | Decreases |
| 0 | 1 | Shewanella aestuarii | species | Decreases |
| 0 | 1 | Shewanella amazonensis | species | Decreases |
| 0 | 1 | Shewanella avicenniae | species | Decreases |
| 0 | 1 | Shewanella benthica | species | Decreases |
| 0 | 1 | Shewanella bicestrii | species | Decreases |
| 0 | 1 | Shewanella carassii | species | Decreases |
| 0 | 1 | Shewanella chilikensis | species | Decreases |
| 0 | 1 | Shewanella colwelliana | species | Decreases |
| 0 | 1 | Shewanella corallii | species | Decreases |
| 0 | 1 | Shewanella cyperi | species | Decreases |
| 0 | 1 | Shewanella decolorationis | species | Decreases |
| 0 | 1 | Shewanella denitrificans | species | Decreases |
| 0 | 1 | Shewanella dokdonensis | species | Decreases |
| 0 | 1 | Shewanella donghaensis | species | Decreases |
| 0 | 1 | Shewanella electrodiphila | species | Decreases |
| 0 | 1 | Shewanella eurypsychrophilus | species | Decreases |
| 0 | 1 | Shewanella frigidimarina | species | Decreases |
| 0 | 1 | Shewanella gaetbuli | species | Decreases |
| 0 | 1 | Shewanella glacialimarina | species | Decreases |
| 0 | 1 | Shewanella halifaxensis | species | Decreases |
| 0 | 1 | Shewanella halotolerans | species | Decreases |
| 0 | 1 | Shewanella hanedai | species | Decreases |
| 0 | 1 | Shewanella insulae | species | Decreases |
| 0 | 1 | Shewanella inventionis | species | Decreases |
| 0 | 1 | Shewanella irciniae | species | Decreases |
| 0 | 1 | Shewanella japonica | species | Decreases |
| 0 | 1 | Shewanella khirikhana | species | Decreases |
| 0 | 1 | Shewanella litorisediminis | species | Decreases |
| 0 | 1 | Shewanella livingstonensis | species | Decreases |
| 0 | 1 | Shewanella loihica | species | Decreases |
| 0 | 1 | Shewanella mangrovisoli | species | Decreases |
| 0 | 1 | Shewanella marisflavi | species | Decreases |
| 0 | 1 | Shewanella maritima | species | Decreases |
| 0 | 1 | Shewanella mesophila | species | Decreases |
| 0 | 1 | Shewanella morhuae | species | Decreases |
| 0 | 1 | Shewanella olleyana | species | Decreases |
| 0 | 1 | Shewanella oneidensis | species | Decreases |
| 0 | 1 | Shewanella pealeana | species | Decreases |
| 0 | 1 | Shewanella piezotolerans | species | Decreases |
| 0 | 1 | Shewanella pneumatophori | species | Decreases |
| 0 | 1 | Shewanella polaris | species | Decreases |
| 0 | 1 | Shewanella profunda | species | Decreases |
| 0 | 1 | Shewanella psychromarinicola | species | Decreases |
| 0 | 1 | Shewanella psychropiezotolerans | species | Decreases |
| 0 | 1 | Shewanella psychrotolerans | species | Decreases |
| 0 | 1 | Shewanella putrefaciens | species | Decreases |
| 0 | 1 | Shewanella rhizosphaerae | species | Decreases |
| 0 | 1 | Shewanella sedimentimangrovi | species | Decreases |
| 0 | 1 | Shewanella sediminis | species | Decreases |
| 0 | 1 | Shewanella seohaensis | species | Decreases |
| 0 | 1 | Shewanella upenei | species | Decreases |
| 0 | 1 | Shewanella vesiculosa | species | Decreases |
| 0 | 1 | Shewanella violacea | species | Decreases |
| 0 | 1 | Shewanella woodyi | species | Decreases |
| 0 | 1 | Shewanella xiamenensis | species | Decreases |
| 0 | 1 | Shewanella yunxiaonensis | species | Decreases |
| 0 | 1 | Sinomonas cyclohexanicum | species | Decreases |
| 0 | 1 | Stenotrophomonas chelatiphaga | species | Decreases |
| 0 | 1 | Stenotrophomonas geniculata | species | Decreases |
| 0 | 1 | Stenotrophomonas humi | species | Decreases |
| 0 | 1 | Stenotrophomonas indicatrix | species | Decreases |
| 0 | 1 | Stenotrophomonas nitritireducens | species | Decreases |
| 0 | 1 | Stenotrophomonas pavanii | species | Decreases |
| 0 | 1 | Stenotrophomonas terrae | species | Decreases |
| 0 | 1 | Stutzerimonas azotifigens | species | Decreases |
| 0 | 1 | Stutzerimonas chloritidismutans | species | Decreases |
| 0 | 1 | Stutzerimonas kunmingensis | species | Decreases |
| 0 | 1 | Stutzerimonas zhaodongensis | species | Decreases |
| 0 | 1 | Veillonella caviae | species | Decreases |
| 0 | 1 | Veillonella criceti | species | Decreases |
| 0 | 1 | Veillonella denticariosi | species | Decreases |
| 0 | 1 | Veillonella infantium | species | Decreases |
| 0 | 1 | Veillonella magna | species | Decreases |
| 0 | 1 | Veillonella montpellierensis | species | Decreases |
| 0 | 1 | Veillonella ratti | species | Decreases |
| 0 | 1 | Veillonella seminalis | species | Decreases |
| 0 | 1 | Veillonella tobetsuensis | species | Decreases |
| 0 | 1 | Winslowiella toletana | species | Decreases |
| 0 | 4 | Clostridium isatidis | species | Decreases |
| 0 | 4 | Clostridium cochlearium | species | Decreases |
| 0 | 1 | Veillonella rodentium | species | Decreases |
| 0 | 1 | Klebsiella variicola | species | Decreases |
| 0 | 4 | Streptococcus toyakuensis | species | Decreases |
| 0 | 1 | Corynebacterium nuruki | species | Decreases |
| 0 | 4 | Clostridium saccharoperbutylacetonicum | species | Decreases |
| 0 | 4 | Clostridium gelidum | species | Decreases |
| 0 | 4 | Streptococcus merionis | species | Decreases |
| 0 | 4 | Clostridium chauvoei | species | Decreases |
| 0 | 1 | Lactococcus formosensis | species | Decreases |
| 0 | 1 | Lactococcus raffinolactis | species | Decreases |
| 0 | 1 | Kocuria palustris | species | Decreases |
| 1 | 1 | Ligilactobacillus acidipiscis | species | Decreases |
| 0 | 4 | Clostridium septicum | species | Decreases |
| 0 | 1 | Klebsiella aerogenes | species | Decreases |
| 0 | 1 | Klebsiella michiganensis | species | Decreases |
| 0 | 1 | Klebsiella africana | species | Decreases |
| 0 | 2 | Pseudomonas phenolilytica | species | Decreases |
| 0 | 2 | Rothia aeria | species | Decreases |
| 0 | 1 | Corynebacterium terpenotabidum | species | Decreases |
| 0 | 4 | Streptococcus mutans | species | Decreases |
| 0 | 4 | Clostridium baratii | species | Decreases |
| 0 | 1 | Corynebacterium falsenii | species | Decreases |
| 0 | 4 | Streptococcus milleri | species | Decreases |
| 0 | 4 | Streptococcus ruminicola | species | Decreases |
| 0 | 4 | Clostridium beijerinckii | species | Decreases |
| 0 | 4 | Clostridium botulinum | species | Decreases |
| 1 | 18 | Bifidobacterium thermophilum | species | Decreases |
| 0 | 1 | Arthrobacter tumbae | species | Decreases |
| 0 | 4 | Streptococcus periodonticum | species | Decreases |
| 0 | 1 | Corynebacterium suranareeae | species | Decreases |
| 0 | 4 | Streptococcus cristatus | species | Decreases |
| 0 | 4 | Clostridium carboxidivorans | species | Decreases |
| 0 | 4 | Clostridium scatologenes | species | Decreases |
| 0 | 4 | Streptococcus parauberis | species | Decreases |
| 0 | 4 | Clostridium felsineum | species | Decreases |
| 0 | 1 | Corynebacterium matruchotii | species | Decreases |
| 0 | 1 | Corynebacterium vitaeruminis | species | Decreases |
| 0 | 1 | Stenotrophomonas rhizophila | species | Decreases |
| 0 | 1 | Corynebacterium atypicum | species | Decreases |
| 0 | 1 | Corynebacterium tuberculostearicum | species | Decreases |
| 0 | 4 | Streptococcus macedonicus | species | Decreases |
| 0 | 1 | Citrobacter amalonaticus | species | Decreases |
| 0 | 1 | Corynebacterium accolens | species | Decreases |
| 0 | 3 | Enterococcus faecium | species | Decreases |
| 0 | 1 | Corynebacterium testudinoris | species | Decreases |
| 0 | 1 | Klebsiella pasteurii | species | Decreases |
| 0 | 1 | Lactococcus garvieae | species | Decreases |
| 0 | 4 | Streptococcus uberis | species | Decreases |
| 0 | 1 | Corynebacterium propinquum | species | Decreases |
| 0 | 1 | Corynebacterium kefirresidentii | species | Decreases |
| 0 | 1 | Corynebacterium striatum | species | Decreases |
| 0 | 1 | Corynebacterium aurimucosum | species | Decreases |
| 0 | 1 | Lactococcus taiwanensis | species | Decreases |
| 0 | 4 | Streptococcus gallolyticus | species | Decreases |
| 0 | 4 | Streptococcus himalayensis | species | Decreases |
| 0 | 1 | Corynebacterium minutissimum | species | Decreases |
| 0 | 1 | Corynebacterium pseudodiphtheriticum | species | Decreases |
| 0 | 4 | Streptococcus pseudoporcinus | species | Decreases |
| 0 | 1 | Klebsiella grimontii | species | Decreases |
| 0 | 1 | Corynebacterium variabile | species | Decreases |
| 0 | 1 | Citrobacter pasteurii | species | Decreases |
| 0 | 4 | Clostridium tetani | species | Decreases |
| 0 | 1 | Corynebacterium amycolatum | species | Decreases |
| 0 | 1 | Klebsiella oxytoca | species | Decreases |
| 0 | 3 | Campylobacter corcagiensis | species | Decreases |
| 0 | 4 | Clostridium kluyveri | species | Decreases |
| 0 | 1 | Corynebacterium simulans | species | Decreases |
| 0 | 4 | Streptococcus pluranimalium | species | Decreases |
| 1 | 1 | Rothia terrae | species | Decreases |
| 0 | 2 | Pseudomonas chengduensis | species | Decreases |
| 0 | 1 | Stenotrophomonas acidaminiphila | species | Decreases |
| 0 | 1 | Corynebacterium pseudogenitalium | species | Decreases |
| 1 | 0 | Escherichia albertii | species | Decreases |
| 1 | 0 | Escherichia marmotae | species | Decreases |
| 0 | 3 | Enterococcus casseliflavus | species | Decreases |
| 0 | 4 | Clostridium tyrobutyricum | species | Decreases |
| 0 | 4 | Streptococcus lutetiensis | species | Decreases |
| 0 | 1 | Corynebacterium jeikeium | species | Decreases |
| 0 | 1 | Corynebacterium argentoratense | species | Decreases |
| 0 | 1 | Klebsiella quasivariicola | species | Decreases |
| 0 | 1 | Corynebacterium glutamicum | species | Decreases |
| 0 | 1 | Lactococcus piscium | species | Decreases |
| 0 | 4 | Streptococcus pasteurianus | species | Decreases |
| 0 | 1 | Shewanella algae | species | Decreases |
| 0 | 4 | Streptococcus porcinus | species | Decreases |
| 0 | 4 | Clostridium bornimense | species | Decreases |
| 0 | 1 | Shewanella psychrophila | species | Decreases |
| 0 | 1 | Corynebacterium provencense | species | Decreases |
| 0 | 3 | Enterococcus cecorum | species | Decreases |
| 0 | 3 | Campylobacter fetus | species | Decreases |
| 0 | 2 | Rothia kristinae | species | Decreases |
| 0 | 1 | Citrobacter cronae | species | Decreases |
| 0 | 4 | Clostridium neonatale | species | Decreases |
| 0 | 1 | Arthrobacter alpinus | species | Decreases |
| 0 | 1 | Citrobacter tructae | species | Decreases |
| 0 | 4 | Streptococcus acidominimus | species | Decreases |
| 0 | 1 | Corynebacterium choanae | species | Decreases |
| 0 | 1 | Corynebacterium timonense | species | Decreases |
| 0 | 3 | Campylobacter showae | species | Decreases |
| 0 | 4 | Streptococcus equinus | species | Decreases |
| 0 | 3 | Campylobacter concisus | species | Decreases |
| 0 | 3 | Campylobacter rectus | species | Decreases |
| 0 | 4 | Streptococcus alactolyticus | species | Decreases |
| 0 | 4 | Clostridium manihotivorum | species | Decreases |
| 0 | 1 | Corynebacterium stationis | species | Decreases |
| 0 | 1 | Corynebacterium xerosis | species | Decreases |
| 0 | 3 | Campylobacter gracilis | species | Decreases |
| 0 | 1 | Macrococcoides canis | species | Decreases |
| 0 | 4 | Streptococcus suis | species | Decreases |
| 0 | 3 | Enterococcus lactis | species | Decreases |
| 0 | 4 | Streptococcus urinalis | species | Decreases |
| 0 | 1 | Erwinia persicina | species | Decreases |
| 0 | 1 | Citrobacter farmeri | species | Decreases |
| 0 | 1 | Lactococcus petauri | species | Decreases |
| 0 | 3 | Campylobacter hominis | species | Decreases |
| 0 | 3 | Enterococcus gilvus | species | Decreases |
| 0 | 3 | Enterococcus raffinosus | species | Decreases |
| 0 | 3 | Enterococcus innesii | species | Decreases |
| 0 | 1 | Corynebacterium kroppenstedtii | species | Decreases |
| 0 | 1 | Corynebacterium flavescens | species | Decreases |
| 0 | 2 | Pseudomonas psychrophila | species | Decreases |
| 0 | 1 | Klebsiella huaxiensis | species | Decreases |
| 0 | 3 | Campylobacter lari | species | Decreases |
| 0 | 3 | Campylobacter ureolyticus | species | Decreases |
| 0 | 1 | Corynebacterium glucuronolyticum | species | Decreases |
| 0 | 4 | Streptococcus infantarius | species | Decreases |
| 0 | 1 | Corynebacterium callunae | species | Decreases |
| 0 | 3 | Enterococcus saccharolyticus | species | Decreases |
| 0 | 4 | Streptococcus canis | species | Decreases |
| 0 | 3 | Enterococcus durans | species | Decreases |
| 0 | 4 | Clostridium thermarum | species | Decreases |
| 0 | 3 | Enterococcus dispar | species | Decreases |
| 0 | 1 | Lactococcus carnosus | species | Decreases |
| 0 | 3 | Enterococcus thailandicus | species | Decreases |
| 0 | 1 | Shewanella zhangzhouensis | species | Decreases |
| 0 | 4 | Streptococcus parasuis | species | Decreases |
| 0 | 4 | Streptococcus ruminantium | species | Decreases |
| 0 | 1 | Erwinia amylovora | species | Decreases |
| 0 | 4 | Streptococcus pyogenes | species | Decreases |
| 0 | 4 | Streptococcus iniae | species | Decreases |
| 0 | 1 | Corynebacterium ureicelerivorans | species | Decreases |
| 0 | 4 | Streptococcus sobrinus | species | Decreases |
| 0 | 4 | Clostridium estertheticum | species | Decreases |
| 0 | 3 | Enterococcus mundtii | species | Decreases |
| 0 | 4 | Clostridium pasteurianum | species | Decreases |
| 0 | 3 | Enterococcus saigonensis | species | Decreases |
| 0 | 1 | Citrobacter rodentium | species | Decreases |
| 0 | 1 | Corynebacterium riegelii | species | Decreases |
| 0 | 3 | Campylobacter curvus | species | Decreases |
| 0 | 1 | Corynebacterium coyleae | species | Decreases |
| 0 | 1 | Corynebacterium resistens | species | Decreases |
| 0 | 1 | Corynebacterium singulare | species | Decreases |
| 0 | 1 | Corynebacterium macginleyi | species | Decreases |
| 0 | 1 | Citrobacter arsenatis | species | Decreases |
| 0 | 1 | Corynebacterium massiliense | species | Decreases |
| 0 | 3 | Campylobacter geochelonis | species | Decreases |
| 0 | 1 | Corynebacterium diphtheriae | species | Decreases |
| 0 | 1 | Corynebacterium sanguinis | species | Decreases |
| 0 | 1 | Corynebacterium afermentans | species | Decreases |
| 0 | 1 | Shewanella baltica | species | Decreases |
| 0 | 1 | Flavobacterium ammonificans | species | Decreases |
| 0 | 1 | Corynebacterium imitans | species | Decreases |
| 0 | 1 | Lactococcus paracarnosus | species | Decreases |
| 0 | 4 | Streptococcus ferus | species | Decreases |
| 0 | 1 | Corynebacterium confusum | species | Decreases |
| 0 | 1 | Candidatus Erwinia haradaeae | species | Decreases |
| 0 | 2 | Blautia argi | species | Decreases |
| 0 | 2 | Blautia caecimuris | species | Decreases |
| 0 | 2 | Blautia coccoides | species | Decreases |
| 0 | 2 | Blautia difficilis | species | Decreases |
| 0 | 2 | Blautia faecicola | species | Decreases |
| 0 | 2 | Blautia faecis | species | Decreases |
| 0 | 2 | Blautia fusiformis | species | Decreases |
| 0 | 2 | Blautia glucerasea | species | Decreases |
| 0 | 2 | Blautia hansenii | species | Decreases |
| 0 | 2 | Blautia hominis | species | Decreases |
| 0 | 2 | Blautia hydrogenotrophica | species | Decreases |
| 0 | 2 | Blautia intestinalis | species | Decreases |
| 0 | 2 | Blautia lenta | species | Decreases |
| 0 | 2 | Blautia liquoris | species | Decreases |
| 0 | 2 | Blautia luti | species | Decreases |
| 0 | 2 | Blautia marasmi | species | Decreases |
| 0 | 2 | Blautia massiliensis (ex Durand et al. 2017) | species | Decreases |
| 0 | 2 | Blautia obeum | species | Decreases |
| 0 | 2 | Blautia producta | species | Decreases |
| 0 | 2 | Blautia provencensis | species | Decreases |
| 0 | 2 | Blautia pseudococcoides | species | Decreases |
| 0 | 2 | Blautia schinkii | species | Decreases |
| 0 | 2 | Blautia segnis | species | Decreases |
| 0 | 2 | Blautia stercoris | species | Decreases |
| 0 | 2 | Blautia tarda | species | Decreases |
| 0 | 2 | Candidatus Blautia avicola | species | Decreases |
| 0 | 2 | Candidatus Blautia avistercoris | species | Decreases |
| 0 | 2 | Candidatus Blautia gallistercoris | species | Decreases |
| 0 | 2 | Candidatus Blautia intestinavium | species | Decreases |
| 0 | 2 | Candidatus Blautia merdigallinarum | species | Decreases |
| 0 | 2 | Candidatus Blautia ornithocaccae | species | Decreases |
| 0 | 2 | Candidatus Blautia pullicola | species | Decreases |
| 0 | 2 | Candidatus Blautia pullistercoris | species | Decreases |
| 0 | 2 | Candidatus Blautia stercorigallinarum | species | Decreases |
| 1 | 0 | Escherichia fergusonii | species | Decreases |
| 0 | 1 | Salinicoccus albus | species | Decreases |
| 0 | 1 | Salinicoccus halitifaciens | species | Decreases |
| 0 | 1 | Salinicoccus halodurans | species | Decreases |
| 0 | 1 | Salinicoccus hispanicus | species | Decreases |
| 0 | 1 | Salinicoccus iranensis | species | Decreases |
| 0 | 1 | Salinicoccus luteus | species | Decreases |
| 0 | 1 | Salinicoccus roseus | species | Decreases |
| 0 | 1 | Salinicoccus salsiraiae | species | Decreases |
| 0 | 2 | Staphylococcus agnetis | species | Decreases |
| 0 | 2 | Staphylococcus argenteus | species | Decreases |
| 0 | 2 | Staphylococcus arlettae | species | Decreases |
| 0 | 2 | Staphylococcus aureus | species | Decreases |
| 0 | 2 | Staphylococcus auricularis | species | Decreases |
| 0 | 2 | Staphylococcus caeli | species | Decreases |
| 0 | 2 | Staphylococcus capitis | species | Decreases |
| 0 | 2 | Staphylococcus caprae | species | Decreases |
| 0 | 2 | Staphylococcus carnosus | species | Decreases |
| 0 | 2 | Staphylococcus chromogenes | species | Decreases |
| 0 | 2 | Staphylococcus coagulans | species | Decreases |
| 0 | 2 | Staphylococcus condimenti | species | Decreases |
| 0 | 2 | Staphylococcus debuckii | species | Decreases |
| 0 | 2 | Staphylococcus devriesei | species | Decreases |
| 0 | 2 | Staphylococcus edaphicus | species | Decreases |
| 0 | 2 | Staphylococcus epidermidis | species | Decreases |
| 0 | 2 | Staphylococcus equorum | species | Decreases |
| 0 | 2 | Staphylococcus felis | species | Decreases |
| 0 | 2 | Staphylococcus gallinarum | species | Decreases |
| 0 | 2 | Staphylococcus haemolyticus | species | Decreases |
| 0 | 2 | Staphylococcus hominis | species | Decreases |
| 0 | 2 | Staphylococcus hyicus | species | Decreases |
| 0 | 2 | Staphylococcus kloosii | species | Decreases |
| 0 | 2 | Staphylococcus lloydii | species | Decreases |
| 0 | 2 | Staphylococcus lugdunensis | species | Decreases |
| 0 | 2 | Staphylococcus lutrae | species | Decreases |
| 0 | 2 | Staphylococcus massiliensis | species | Decreases |
| 0 | 2 | Staphylococcus muscae | species | Decreases |
| 0 | 2 | Staphylococcus nepalensis | species | Decreases |
| 0 | 2 | Staphylococcus pasteuri | species | Decreases |
| 0 | 2 | Staphylococcus pasteuri_A | species | Decreases |
| 0 | 2 | Staphylococcus petrasii | species | Decreases |
| 0 | 2 | Staphylococcus pettenkoferi | species | Decreases |
| 0 | 2 | Staphylococcus piscifermentans | species | Decreases |
| 0 | 2 | Staphylococcus pragensis | species | Decreases |
| 0 | 2 | Staphylococcus pseudolugdunensis | species | Decreases |
| 0 | 2 | Staphylococcus pseudoxylosus | species | Decreases |
| 0 | 2 | Staphylococcus ratti | species | Decreases |
| 0 | 2 | Staphylococcus saccharolyticus | species | Decreases |
| 0 | 2 | Staphylococcus saprophyticus | species | Decreases |
| 0 | 2 | Staphylococcus schleiferi | species | Decreases |
| 0 | 2 | Staphylococcus schweitzeri | species | Decreases |
| 0 | 2 | Staphylococcus simiae | species | Decreases |
| 0 | 2 | Staphylococcus simulans | species | Decreases |
| 0 | 2 | Staphylococcus succinus | species | Decreases |
| 0 | 2 | Staphylococcus ureilyticus | species | Decreases |
| 0 | 2 | Staphylococcus warneri | species | Decreases |
| 0 | 2 | Staphylococcus xylosus | species | Decreases |
| 0 | 3 | Phocaeicola coprocola | species | Increases |
| 0 | 4 | Lacrimispora xylanisolvens | species | Increases |
| 0 | 19 | Bifidobacterium saguini | species | Increases |
| 0 | 1 | Pediococcus damnosus | species | Increases |
| 0 | 8 | Lactobacillus ultunensis | species | Increases |
| 0 | 3 | Phocaeicola sartorii | species | Increases |
| 0 | 7 | Bacteroides zoogleoformans | species | Increases |
| 0 | 19 | Bifidobacterium pseudolongum | species | Increases |
| 0 | 19 | Bifidobacterium asteroides | species | Increases |
| 0 | 1 | Parabacteroides faecis | species | Increases |
| 0 | 1 | Pediococcus inopinatus | species | Increases |
| 0 | 1 | Lachnoclostridium phytofermentans | species | Increases |
| 0 | 1 | Lacticaseibacillus pantheris | species | Increases |
| 0 | 1 | Ligilactobacillus murinus | species | Increases |
| 0 | 19 | Bifidobacterium subtile | species | Increases |
| 1 | 4 | Clostridium perfringens | species | Increases |
| 0 | 7 | Bacteroides coprosuis | species | Increases |
| 0 | 1 | Ligilactobacillus agilis | species | Increases |
| 0 | 7 | Bacteroides heparinolyticus | species | Increases |
| 0 | 1 | Listeria innocua | species | Increases |
| 0 | 1 | Parabacteroides goldsteinii | species | Increases |
| 0 | 19 | Bifidobacterium pullorum | species | Increases |
| 0 | 1 | Rhizobium oryzihabitans | species | Increases |
| 0 | 1 | Vibrio fluvialis | species | Increases |
| 0 | 1 | Companilactobacillus ginsenosidimutans | species | Increases |
| 0 | 1 | Comamonas terrigena | species | Increases |
| 1 | 0 | Listeria floridensis | species | Increases |
| 1 | 0 | Mammaliicoccus stepanovicii | species | Increases |
| 0 | 1 | Eubacterium maltosivorans | species | Increases |
| 0 | 1 | Alistipes megaguti | species | Increases |
| 0 | 1 | Companilactobacillus allii | species | Increases |
| 0 | 1 | Limosilactobacillus gastricus | species | Increases |
| 0 | 1 | Limosilactobacillus pontis | species | Increases |
| 0 | 1 | Parabacteroides johnsonii | species | Increases |
| 0 | 3 | Phocaeicola coprophilus | species | Increases |
| 0 | 1 | Eubacterium callanderi | species | Increases |
| 0 | 9 | Akkermansia glycaniphila | species | Increases |
| 1 | 1 | Veillonella parvula | species | Increases |
| 0 | 1 | Comamonas thiooxydans | species | Increases |
| 0 | 1 | Kluyvera genomosp. 3 | species | Increases |
| 0 | 1 | Comamonas antarctica | species | Increases |
| 0 | 1 | Eubacterium limosum | species | Increases |
| 0 | 2 | Ruminococcus gauvreauii | species | Increases |
| 0 | 1 | Lactiplantibacillus paraplantarum | species | Increases |
| 0 | 1 | Lactiplantibacillus pentosus | species | Increases |
| 0 | 1 | Limosilactobacillus frumenti | species | Increases |
| 0 | 1 | Companilactobacillus crustorum | species | Increases |
| 0 | 1 | Comamonas aquatica | species | Increases |
| 0 | 1 | Ligilactobacillus saerimneri | species | Increases |
| 0 | 1 | Limosilactobacillus panis | species | Increases |
| 0 | 1 | Lentilactobacillus kefiri | species | Increases |
| 0 | 1 | Limosilactobacillus oris | species | Increases |
| 0 | 1 | Limosilactobacillus vaginalis | species | Increases |
| 0 | 1 | [Clostridium] hylemonae | species | Increases |
| 0 | 1 | Vibrio coralliilyticus | species | Increases |
| 0 | 1 | Comamonas nitrativorans | species | Increases |
| 1 | 0 | Lacrimispora saccharolytica | species | Increases |
| 1 | 0 | Mammaliicoccus fleurettii | species | Increases |
| 1 | 0 | Mammaliicoccus sciuri | species | Increases |
| 0 | 1 | Lachnoclostridium phocaeense | species | Increases |
| 0 | 1 | Parabacteroides merdae | species | Increases |
| 0 | 3 | Phocaeicola salanitronis | species | Increases |
| 0 | 7 | Bacteroides zhangwenhongii | species | Increases |
| 0 | 1 | Lentilactobacillus hilgardii | species | Increases |
| 0 | 1 | Alistipes indistinctus | species | Increases |
| 0 | 1 | Comamonas testosteroni | species | Increases |
| 0 | 1 | Kluyvera intermedia | species | Increases |
| 0 | 7 | Bacteroides nordii | species | Increases |
| 0 | 7 | Bacteroides stercoris | species | Increases |
| 0 | 1 | Alistipes dispar | species | Increases |
| 0 | 1 | Companilactobacillus paralimentarius | species | Increases |
| 0 | 1 | Paucilactobacillus oligofermentans | species | Increases |
| 0 | 1 | Paucilactobacillus hokkaidonensis | species | Increases |
| 0 | 1 | Alistipes ihumii | species | Increases |
| 0 | 1 | Bacillus glycinifermentans | species | Increases |
| 0 | 1 | Companilactobacillus zhachilii | species | Increases |
| 0 | 1 | Listeria grayi | species | Increases |
| 0 | 1 | [Clostridium] aminophilum | species | Increases |
| 0 | 1 | [Clostridium] fimetarium | species | Increases |
| 0 | 1 | [Clostridium] herbivorans | species | Increases |
| 0 | 1 | [Clostridium] methoxybenzovorans | species | Increases |
| 0 | 1 | [Clostridium] polysaccharolyticum | species | Increases |
| 0 | 1 | [Clostridium] symbiosum | species | Increases |
| 0 | 1 | [Eubacterium] cellulosolvens | species | Increases |
| 0 | 1 | Acetilactobacillus jinshanensis | species | Increases |
| 0 | 1 | Agrilactobacillus composti | species | Increases |
| 0 | 1 | Alistipes hominis | species | Increases |
| 0 | 1 | Alistipes inops | species | Increases |
| 0 | 1 | Alistipes massiliensis | species | Increases |
| 0 | 1 | Alistipes montrealensis | species | Increases |
| 0 | 1 | Alistipes obesi | species | Increases |
| 0 | 1 | Alistipes provencensis | species | Increases |
| 0 | 1 | Alistipes putredinis | species | Increases |
| 0 | 1 | Alistipes timonensis | species | Increases |
| 0 | 1 | Amylolactobacillus amylophilus | species | Increases |
| 0 | 1 | Amylolactobacillus amylotrophicus | species | Increases |
| 0 | 1 | Apilactobacillus bombintestini | species | Increases |
| 0 | 1 | Apilactobacillus kunkeei | species | Increases |
| 0 | 1 | Apilactobacillus ozensis | species | Increases |
| 0 | 1 | Bacillus aeolius | species | Increases |
| 0 | 1 | Bacillus aerius | species | Increases |
| 0 | 1 | Bacillus alcaliinulinus | species | Increases |
| 0 | 1 | Bacillus alkalicellulosilyticus | species | Increases |
| 0 | 1 | Bacillus alveayuensis | species | Increases |
| 0 | 1 | Bacillus aquiflavi | species | Increases |
| 0 | 1 | Bacillus arachidis | species | Increases |
| 0 | 1 | Bacillus arbutinivorans | species | Increases |
| 0 | 1 | Bacillus badius | species | Increases |
| 0 | 1 | Bacillus benzoevorans | species | Increases |
| 0 | 1 | Bacillus cabrialesii | species | Increases |
| 0 | 1 | Bacillus canaveralius | species | Increases |
| 0 | 1 | Bacillus carboniphilus | species | Increases |
| 0 | 1 | Bacillus coahuilensis | species | Increases |
| 0 | 1 | Bacillus djibelorensis | species | Increases |
| 0 | 1 | Bacillus ferrariarum | species | Increases |
| 0 | 1 | Bacillus fonticola | species | Increases |
| 0 | 1 | Bacillus freudenreichii | species | Increases |
| 0 | 1 | Bacillus gobiensis | species | Increases |
| 0 | 1 | Bacillus hackensackii | species | Increases |
| 0 | 1 | Bacillus haynesii | species | Increases |
| 0 | 1 | Bacillus horti | species | Increases |
| 0 | 1 | Bacillus infantis | species | Increases |
| 0 | 1 | Bacillus infernus | species | Increases |
| 0 | 1 | Bacillus intestinalis Tetz and Tetz 2017 | species | Increases |
| 0 | 1 | Bacillus isabeliae | species | Increases |
| 0 | 1 | Bacillus mediterraneensis | species | Increases |
| 0 | 1 | Bacillus methanolicus | species | Increases |
| 0 | 1 | Bacillus nematocida | species | Increases |
| 0 | 1 | Bacillus olivae | species | Increases |
| 0 | 1 | Bacillus pakistanensis | species | Increases |
| 0 | 1 | Bacillus pseudomegaterium | species | Increases |
| 0 | 1 | Bacillus rugosus | species | Increases |
| 0 | 1 | Bacillus shandongensis | species | Increases |
| 0 | 1 | Bacillus shivajii | species | Increases |
| 0 | 1 | Bacillus smithii | species | Increases |
| 0 | 1 | Bacillus solimangrovi | species | Increases |
| 0 | 1 | Bacillus thermoamyloliquefaciens | species | Increases |
| 0 | 1 | Bacillus thermoproteolyticus | species | Increases |
| 0 | 1 | Bacillus thermotolerans | species | Increases |
| 0 | 1 | Bacillus tianmuensis | species | Increases |
| 0 | 1 | Bacillus weihaiensis | species | Increases |
| 0 | 1 | Bacillus xiamenensis | species | Increases |
| 0 | 1 | Barnesiella intestinihominis | species | Increases |
| 0 | 1 | Barnesiella sp. EBA4-14 | species | Increases |
| 0 | 1 | Barnesiella sp. S496 | species | Increases |
| 0 | 1 | Bombilactobacillus bombi | species | Increases |
| 0 | 1 | Bombilactobacillus mellifer | species | Increases |
| 0 | 1 | Bombilactobacillus mellis | species | Increases |
| 0 | 1 | Burkholderia glumae | species | Increases |
| 0 | 1 | Burkholderia plantarii | species | Increases |
| 0 | 1 | Burkholderia sp. Bp5365 | species | Increases |
| 0 | 1 | Burkholderia sp. OLGA172 | species | Increases |
| 0 | 1 | Candidatus Alistipes avistercoris | species | Increases |
| 0 | 1 | Candidatus Alistipes cottocaccae | species | Increases |
| 0 | 1 | Candidatus Alistipes excrementavium | species | Increases |
| 0 | 1 | Candidatus Alistipes excrementigallinarum | species | Increases |
| 0 | 1 | Candidatus Alistipes excrementipullorum | species | Increases |
| 0 | 1 | Candidatus Alistipes faecigallinarum | species | Increases |
| 0 | 1 | Candidatus Alistipes intestinigallinarum | species | Increases |
| 0 | 1 | Candidatus Alistipes merdavium | species | Increases |
| 0 | 1 | Candidatus Alistipes merdipullorum | species | Increases |
| 0 | 1 | Candidatus Alistipes pullicola | species | Increases |
| 0 | 1 | Candidatus Alistipes pullistercoris | species | Increases |
| 0 | 1 | Candidatus Alistipes stercorigallinarum | species | Increases |
| 0 | 1 | Candidatus Alistipes stercoripullorum | species | Increases |
| 0 | 1 | Candidatus Barnesiella excrementipullorum | species | Increases |
| 0 | 1 | Candidatus Barnesiella merdigallinarum | species | Increases |
| 0 | 1 | Candidatus Eubacterium faecale | species | Increases |
| 0 | 1 | Candidatus Eubacterium faecavium | species | Increases |
| 0 | 1 | Candidatus Eubacterium faecipullorum | species | Increases |
| 0 | 1 | Candidatus Hungatella pullicola | species | Increases |
| 0 | 1 | Candidatus Lachnoclostridium avicola | species | Increases |
| 0 | 1 | Candidatus Oscillibacter avistercoris | species | Increases |
| 0 | 1 | Candidatus Oscillibacter excrementavium | species | Increases |
| 0 | 1 | Candidatus Oscillibacter pullicola | species | Increases |
| 0 | 1 | Candidatus Parabacteroides intestinavium | species | Increases |
| 0 | 1 | Candidatus Parabacteroides intestinipullorum | species | Increases |
| 0 | 1 | Comamonas badia | species | Increases |
| 0 | 1 | Comamonas composti | species | Increases |
| 0 | 1 | Comamonas denitrificans | species | Increases |
| 0 | 1 | Comamonas flocculans | species | Increases |
| 0 | 1 | Comamonas fluminis | species | Increases |
| 0 | 1 | Comamonas guangdongensis | species | Increases |
| 0 | 1 | Comamonas jiangduensis | species | Increases |
| 0 | 1 | Comamonas koreensis | species | Increases |
| 0 | 1 | Comamonas odontotermitis | species | Increases |
| 0 | 1 | Comamonas piscis | species | Increases |
| 0 | 1 | Comamonas serinivorans | species | Increases |
| 0 | 1 | Comamonas terrae | species | Increases |
| 0 | 1 | Companilactobacillus baiquanensis | species | Increases |
| 0 | 1 | Companilactobacillus heilongjiangensis | species | Increases |
| 0 | 1 | Companilactobacillus nantensis | species | Increases |
| 0 | 1 | Companilactobacillus nodensis | species | Increases |
| 0 | 1 | Companilactobacillus tucceti | species | Increases |
| 0 | 1 | Companilactobacillus versmoldensis | species | Increases |
| 0 | 1 | Cytobacillus dafuensis | species | Increases |
| 0 | 1 | Dellaglioa algida | species | Increases |
| 0 | 1 | Enterocloster hominis (ex Hitch et al. 2024) | species | Increases |
| 0 | 1 | Eubacterium album | species | Increases |
| 0 | 1 | Eubacterium barkeri | species | Increases |
| 0 | 1 | Eubacterium coprostanoligenes | species | Increases |
| 0 | 1 | Eubacterium multiforme | species | Increases |
| 0 | 1 | Eubacterium oxidoreducens | species | Increases |
| 0 | 1 | Eubacterium plexicaudatum | species | Increases |
| 0 | 1 | Eubacterium pyruvativorans | species | Increases |
| 0 | 1 | Eubacterium ramulus | species | Increases |
| 0 | 1 | Eubacterium rangiferina | species | Increases |
| 0 | 1 | Eubacterium ruminantium | species | Increases |
| 0 | 1 | Eubacterium segne | species | Increases |
| 0 | 1 | Eubacterium uniforme | species | Increases |
| 0 | 1 | Eubacterium xylanophilum | species | Increases |
| 0 | 1 | Fructilactobacillus florum | species | Increases |
| 0 | 1 | Furfurilactobacillus siliginis | species | Increases |
| 0 | 1 | Holzapfeliella floricola | species | Increases |
| 0 | 1 | Hungatella effluvii | species | Increases |
| 0 | 1 | Hungatella hominis | species | Increases |
| 0 | 1 | Hyphomicrobium aestuarii | species | Increases |
| 0 | 1 | Hyphomicrobium chloromethanicum | species | Increases |
| 0 | 1 | Hyphomicrobium denitrificans | species | Increases |
| 0 | 1 | Hyphomicrobium hollandicum | species | Increases |
| 0 | 1 | Hyphomicrobium nitrativorans | species | Increases |
| 0 | 1 | Hyphomicrobium sulfonivorans | species | Increases |
| 0 | 1 | Hyphomicrobium vulgare | species | Increases |
| 0 | 1 | Kluyvera cryocrescens | species | Increases |
| 0 | 1 | Kluyvera georgiana | species | Increases |
| 0 | 1 | Lachnoclostridium edouardi | species | Increases |
| 0 | 1 | Lacticaseibacillus baoqingensis | species | Increases |
| 0 | 1 | Lacticaseibacillus brantae | species | Increases |
| 0 | 1 | Lacticaseibacillus camelliae | species | Increases |
| 0 | 1 | Lacticaseibacillus nasuensis | species | Increases |
| 0 | 1 | Lacticaseibacillus songhuajiangensis | species | Increases |
| 0 | 1 | Lacticaseibacillus thailandensis | species | Increases |
| 0 | 1 | Lactiplantibacillus fabifermentans | species | Increases |
| 0 | 1 | Lactiplantibacillus plajomi | species | Increases |
| 0 | 1 | Lactobacillus sp. | species | Increases |
| 0 | 1 | Lactobacillus sp. 30A | species | Increases |
| 0 | 1 | Lactobacillus sp. Akhmro1 | species | Increases |
| 0 | 1 | Lactobacillus sp. BL302 | species | Increases |
| 0 | 1 | Lactobacillus sp. C30An8 | species | Increases |
| 0 | 1 | Lactobacillus sp. C4I1 | species | Increases |
| 0 | 1 | Lactobacillus sp. C4I18 | species | Increases |
| 0 | 1 | Lactobacillus sp. CBA3606 | species | Increases |
| 0 | 1 | Lactobacillus sp. CR-609S | species | Increases |
| 0 | 1 | Lactobacillus sp. D1501 | species | Increases |
| 0 | 1 | Lactobacillus sp. H7_2_4MCO2 | species | Increases |
| 0 | 1 | Lactobacillus sp. H7_6_6MCO2 | species | Increases |
| 0 | 1 | Lactobacillus sp. NRCT-KU 1 | species | Increases |
| 0 | 1 | Lactobacillus sp. S16 | species | Increases |
| 0 | 1 | Lactobacillus sp. T059 | species | Increases |
| 0 | 1 | Lactobacillus sp. TAB-22 | species | Increases |
| 0 | 1 | Lactobacillus sp. TAB-26 | species | Increases |
| 0 | 1 | Lactobacillus sp. TAB-29 | species | Increases |
| 0 | 1 | Lactobacillus sp. TAB-30 | species | Increases |
| 0 | 1 | Lactobacillus sp. wkB8 | species | Increases |
| 0 | 1 | Lapidilactobacillus achengensis | species | Increases |
| 0 | 1 | Lapidilactobacillus bayanensis | species | Increases |
| 0 | 1 | Lapidilactobacillus dextrinicus | species | Increases |
| 0 | 1 | Latilactobacillus graminis | species | Increases |
| 0 | 1 | Lentilactobacillus curieae | species | Increases |
| 0 | 1 | Lentilactobacillus otakiensis | species | Increases |
| 0 | 1 | Lentilactobacillus parafarraginis | species | Increases |
| 0 | 1 | Lentilactobacillus rapi | species | Increases |
| 0 | 1 | Levilactobacillus acidifarinae | species | Increases |
| 0 | 1 | Levilactobacillus angrenensis | species | Increases |
| 0 | 1 | Levilactobacillus bambusae | species | Increases |
| 0 | 1 | Levilactobacillus namurensis | species | Increases |
| 0 | 1 | Levilactobacillus parabrevis | species | Increases |
| 0 | 1 | Levilactobacillus senmaizukei | species | Increases |
| 0 | 1 | Levilactobacillus suantsaii | species | Increases |
| 0 | 1 | Levilactobacillus zymae | species | Increases |
| 0 | 1 | Ligilactobacillus apodemi | species | Increases |
| 0 | 1 | Ligilactobacillus aviarius | species | Increases |
| 0 | 1 | Ligilactobacillus ceti | species | Increases |
| 0 | 1 | Ligilactobacillus equi | species | Increases |
| 0 | 1 | Limosilactobacillus alvi | species | Increases |
| 0 | 1 | Limosilactobacillus antri | species | Increases |
| 0 | 1 | Limosilactobacillus coleohominis | species | Increases |
| 0 | 1 | Limosilactobacillus equigenerosi | species | Increases |
| 0 | 1 | Limosilactobacillus gorillae | species | Increases |
| 0 | 1 | Limosilactobacillus ingluviei | species | Increases |
| 0 | 1 | Limosilactobacillus secaliphilus | species | Increases |
| 0 | 1 | Liquorilactobacillus aquaticus | species | Increases |
| 0 | 1 | Liquorilactobacillus cacaonum | species | Increases |
| 0 | 1 | Liquorilactobacillus ghanensis | species | Increases |
| 0 | 1 | Liquorilactobacillus hordei | species | Increases |
| 0 | 1 | Liquorilactobacillus mali | species | Increases |
| 0 | 1 | Liquorilactobacillus satsumensis | species | Increases |
| 0 | 1 | Liquorilactobacillus uvarum | species | Increases |
| 0 | 1 | Liquorilactobacillus vini | species | Increases |
| 0 | 1 | Listeria immobilis | species | Increases |
| 0 | 1 | Listeria ivanovii | species | Increases |
| 0 | 1 | Listeria marthii | species | Increases |
| 0 | 1 | Listeria newyorkensis | species | Increases |
| 0 | 1 | Listeria seeligeri | species | Increases |
| 0 | 1 | Listeria weihenstephanensis | species | Increases |
| 0 | 1 | Listeria welshimeri | species | Increases |
| 0 | 1 | Loigolactobacillus bifermentans | species | Increases |
| 0 | 1 | Loigolactobacillus binensis | species | Increases |
| 0 | 1 | Loigolactobacillus rennini | species | Increases |
| 0 | 1 | Nesterenkonia alba | species | Increases |
| 0 | 1 | Nesterenkonia flava | species | Increases |
| 0 | 1 | Nesterenkonia halobia | species | Increases |
| 0 | 1 | Nesterenkonia lacusekhoensis | species | Increases |
| 0 | 1 | Nesterenkonia pannonica | species | Increases |
| 0 | 1 | Nesterenkonia sandarakina | species | Increases |
| 0 | 1 | Nesterenkonia terrae | species | Increases |
| 0 | 1 | Oscillibacter acetigenes | species | Increases |
| 0 | 1 | Oscillibacter massiliensis | species | Increases |
| 0 | 1 | Oscillibacter ruminantium | species | Increases |
| 0 | 1 | Oscillibacter valericigenes | species | Increases |
| 0 | 1 | Parabacteroides acidifaciens | species | Increases |
| 0 | 1 | Parabacteroides chinchillae | species | Increases |
| 0 | 1 | Parabacteroides gordonii | species | Increases |
| 0 | 1 | Parabacteroides leei | species | Increases |
| 0 | 1 | Parabacteroides massiliensis | species | Increases |
| 0 | 1 | Parabacteroides provencensis | species | Increases |
| 0 | 1 | Parabacteroides segnis | species | Increases |
| 0 | 1 | Parabacteroides timonensis | species | Increases |
| 0 | 1 | Pararhizobium gei | species | Increases |
| 0 | 1 | Paucilactobacillus vaccinostercus | species | Increases |
| 0 | 1 | Pediococcus argentinicus | species | Increases |
| 0 | 1 | Pediococcus cellicola | species | Increases |
| 0 | 1 | Pediococcus claussenii | species | Increases |
| 0 | 1 | Pediococcus ethanolidurans | species | Increases |
| 0 | 1 | Pediococcus parvulus | species | Increases |
| 0 | 1 | Pediococcus siamensis | species | Increases |
| 0 | 1 | Peptococcus niger | species | Increases |
| 0 | 1 | Peptococcus simiae | species | Increases |
| 0 | 1 | Rhizobium acidisoli | species | Increases |
| 0 | 1 | Rhizobium alamii | species | Increases |
| 0 | 1 | Rhizobium anhuiense | species | Increases |
| 0 | 1 | Rhizobium bangladeshense | species | Increases |
| 0 | 1 | Rhizobium binae | species | Increases |
| 0 | 1 | Rhizobium cellulosilyticum | species | Increases |
| 0 | 1 | Rhizobium daejeonense | species | Increases |
| 0 | 1 | Rhizobium esperanzae | species | Increases |
| 0 | 1 | Rhizobium etli | species | Increases |
| 0 | 1 | Rhizobium favelukesii | species | Increases |
| 0 | 1 | Rhizobium gallicum | species | Increases |
| 0 | 1 | Rhizobium giardinii | species | Increases |
| 0 | 1 | Rhizobium grahamii | species | Increases |
| 0 | 1 | Rhizobium hidalgonense | species | Increases |
| 0 | 1 | Rhizobium indicum | species | Increases |
| 0 | 1 | Rhizobium indigoferae | species | Increases |
| 0 | 1 | Rhizobium jaguaris | species | Increases |
| 0 | 1 | Rhizobium laguerreae | species | Increases |
| 0 | 1 | Rhizobium leguminosarum | species | Increases |
| 0 | 1 | Rhizobium lentis | species | Increases |
| 0 | 1 | Rhizobium lusitanum | species | Increases |
| 0 | 1 | Rhizobium mesoamericanum | species | Increases |
| 0 | 1 | Rhizobium mesosinicum | species | Increases |
| 0 | 1 | Rhizobium phaseoli | species | Increases |
| 0 | 1 | Rhizobium pisi | species | Increases |
| 0 | 1 | Rhizobium qilianshanense | species | Increases |
| 0 | 1 | Rhizobium rhizogenes | species | Increases |
| 0 | 1 | Rhizobium rhizoryzae | species | Increases |
| 0 | 1 | Rhizobium rhododendri | species | Increases |
| 0 | 1 | Rhizobium rosettiformans | species | Increases |
| 0 | 1 | Rhizobium ruizarguesonis | species | Increases |
| 0 | 1 | Rhizobium subbaraonis | species | Increases |
| 0 | 1 | Rhizobium sullae | species | Increases |
| 0 | 1 | Rhizobium tibeticum | species | Increases |
| 0 | 1 | Rhizobium tropici | species | Increases |
| 0 | 1 | Rhizobium tumorigenes | species | Increases |
| 0 | 1 | Rhizobium viscosum | species | Increases |
| 0 | 3 | Roseburia cecicola | species | Increases |
| 0 | 3 | Roseburia difficilis | species | Increases |
| 0 | 3 | Roseburia faecis | species | Increases |
| 0 | 3 | Roseburia inulinivorans | species | Increases |
| 0 | 3 | Roseburia lenta | species | Increases |
| 0 | 3 | Roseburia porci | species | Increases |
| 0 | 3 | Roseburia yibonii | species | Increases |
| 0 | 3 | Roseburia zhanii | species | Increases |
| 0 | 1 | Rosenbergiella nectarea | species | Increases |
| 0 | 1 | Schleiferilactobacillus perolens | species | Increases |
| 0 | 1 | Secundilactobacillus malefermentans | species | Increases |
| 0 | 1 | Secundilactobacillus oryzae | species | Increases |
| 0 | 1 | Streptococcus raffinosi | species | Increases |
| 0 | 1 | Vibrio aerogenes | species | Increases |
| 0 | 1 | Vibrio aestuarianus | species | Increases |
| 0 | 1 | Vibrio algicola | species | Increases |
| 0 | 1 | Vibrio algivorus | species | Increases |
| 0 | 1 | Vibrio anguillarum | species | Increases |
| 0 | 1 | Vibrio aphrogenes | species | Increases |
| 0 | 1 | Vibrio aquimaris | species | Increases |
| 0 | 1 | Vibrio artabrorum | species | Increases |
| 0 | 1 | Vibrio astriarenae | species | Increases |
| 0 | 1 | Vibrio atlanticus | species | Increases |
| 0 | 1 | Vibrio breoganii | species | Increases |
| 0 | 1 | Vibrio caribbeanicus | species | Increases |
| 0 | 1 | Vibrio casei | species | Increases |
| 0 | 1 | Vibrio celticus | species | Increases |
| 0 | 1 | Vibrio chagasii | species | Increases |
| 0 | 1 | Vibrio cidicii | species | Increases |
| 0 | 1 | Vibrio cincinnatiensis | species | Increases |
| 0 | 1 | Vibrio comitans | species | Increases |
| 0 | 1 | Vibrio coralliirubri | species | Increases |
| 0 | 1 | Vibrio cortegadensis | species | Increases |
| 0 | 1 | Vibrio crassostreae | species | Increases |
| 0 | 1 | Vibrio cyclitrophicus | species | Increases |
| 0 | 1 | Vibrio echinoideorum | species | Increases |
| 0 | 1 | Vibrio fortis | species | Increases |
| 0 | 1 | Vibrio furnissii | species | Increases |
| 0 | 1 | Vibrio gallaecicus | species | Increases |
| 0 | 1 | Vibrio gangliei | species | Increases |
| 0 | 1 | Vibrio gazogenes | species | Increases |
| 0 | 1 | Vibrio gigantis | species | Increases |
| 0 | 1 | Vibrio hippocampi | species | Increases |
| 0 | 1 | Vibrio hispanicus | species | Increases |
| 0 | 1 | Vibrio hyugaensis | species | Increases |
| 0 | 1 | Vibrio ishigakensis | species | Increases |
| 0 | 1 | Vibrio japonicus | species | Increases |
| 0 | 1 | Vibrio kanaloae | species | Increases |
| 0 | 1 | Vibrio lentus | species | Increases |
| 0 | 1 | Vibrio litoralis | species | Increases |
| 0 | 1 | Vibrio mangrovi | species | Increases |
| 0 | 1 | Vibrio maritimus | species | Increases |
| 0 | 1 | Vibrio mediterranei | species | Increases |
| 0 | 1 | Vibrio metoecus | species | Increases |
| 0 | 1 | Vibrio metschnikovii | species | Increases |
| 0 | 1 | Vibrio mimicus | species | Increases |
| 0 | 1 | Vibrio navarrensis | species | Increases |
| 0 | 1 | Vibrio neocaledonicus | species | Increases |
| 0 | 1 | Vibrio neonatus | species | Increases |
| 0 | 1 | Vibrio neptunius | species | Increases |
| 0 | 1 | Vibrio nigripulchritudo | species | Increases |
| 0 | 1 | Vibrio palustris | species | Increases |
| 0 | 1 | Vibrio panuliri | species | Increases |
| 0 | 1 | Vibrio pelagius | species | Increases |
| 0 | 1 | Vibrio penaeicida | species | Increases |
| 0 | 1 | Vibrio plantisponsor | species | Increases |
| 0 | 1 | Vibrio pomeroyi | species | Increases |
| 0 | 1 | Vibrio pommerensis | species | Increases |
| 0 | 1 | Vibrio ponticus | species | Increases |
| 0 | 1 | Vibrio porteresiae | species | Increases |
| 0 | 1 | Vibrio proteolyticus | species | Increases |
| 0 | 1 | Vibrio qinghaiensis | species | Increases |
| 0 | 1 | Vibrio rarus | species | Increases |
| 0 | 1 | Vibrio rhizosphaerae | species | Increases |
| 0 | 1 | Vibrio ruber | species | Increases |
| 0 | 1 | Vibrio rumoiensis | species | Increases |
| 0 | 1 | Vibrio scophthalmi | species | Increases |
| 0 | 1 | Vibrio sp. 1B7 | species | Increases |
| 0 | 1 | Vibrio sp. EJY3 | species | Increases |
| 0 | 1 | Vibrio spartinae | species | Increases |
| 0 | 1 | Vibrio splendidus | species | Increases |
| 0 | 1 | Vibrio stylophorae | species | Increases |
| 0 | 1 | Vibrio syngnathi | species | Increases |
| 0 | 1 | Vibrio taketomensis | species | Increases |
| 0 | 1 | Vibrio tapetis | species | Increases |
| 0 | 1 | Vibrio tarriae | species | Increases |
| 0 | 1 | Vibrio tasmaniensis | species | Increases |
| 0 | 1 | Vibrio toranzoniae | species | Increases |
| 0 | 1 | Vibrio tritonius | species | Increases |
| 0 | 1 | Vibrio variabilis | species | Increases |
| 0 | 1 | Vibrio vulnificus | species | Increases |
| 0 | 1 | Vibrio zhugei | species | Increases |
| 0 | 1 | Vibrio zhuhaiensis | species | Increases |
| 0 | 1 | Vibrio ziniensis | species | Increases |
| 0 | 1 | Shigella sonnei | species | Increases |
| 0 | 1 | Latilactobacillus fuchuensis | species | Increases |
| 0 | 1 | Bacillus safensis | species | Increases |
| 0 | 19 | Bifidobacterium scardovii | species | Increases |
| 0 | 19 | Bifidobacterium imperatoris | species | Increases |
| 0 | 7 | Bacteroides cellulosilyticus | species | Increases |
| 0 | 8 | Lactobacillus helveticus | species | Increases |
| 0 | 2 | Ruminococcus bovis | species | Increases |
| 0 | 1 | Bacillus pumilus | species | Increases |
| 1 | 1 | Ligilactobacillus animalis | species | Increases |
| 0 | 1 | Companilactobacillus farciminis | species | Increases |
| 0 | 19 | Bifidobacterium lemurum | species | Increases |
| 0 | 7 | Bacteroides intestinalis | species | Increases |
| 0 | 1 | Vibrio alfacsensis | species | Increases |
| 0 | 7 | Bacteroides caccae | species | Increases |
| 1 | 4 | Clostridium butyricum | species | Increases |
| 0 | 1 | Limosilactobacillus fermentum | species | Increases |
| 0 | 1 | Lacticaseibacillus rhamnosus | species | Increases |
| 0 | 1 | Loigolactobacillus backii | species | Increases |
| 0 | 1 | Limosilactobacillus mucosae | species | Increases |
| 0 | 1 | Alistipes senegalensis | species | Increases |
| 0 | 3 | Roseburia hominis | species | Increases |
| 0 | 1 | Alistipes shahii | species | Increases |
| 0 | 1 | Shigella boydii | species | Increases |
| 0 | 1 | Alistipes communis | species | Increases |
| 1 | 7 | Lactobacillus taiwanensis | species | Increases |
| 0 | 1 | Burkholderia gladioli | species | Increases |
| 0 | 1 | Latilactobacillus sakei | species | Increases |
| 0 | 1 | Latilactobacillus curvatus | species | Increases |
| 0 | 1 | Alistipes finegoldii | species | Increases |
| 0 | 1 | Alistipes onderdonkii | species | Increases |
| 0 | 3 | Roseburia rectibacter | species | Increases |
| 1 | 3 | Enterococcus gallinarum | species | Increases |
| 0 | 1 | Levilactobacillus koreensis | species | Increases |
| 0 | 19 | Bifidobacterium eulemuris | species | Increases |
| 0 | 1 | Lentilactobacillus buchneri | species | Increases |
| 0 | 1 | Shigella flexneri | species | Increases |
| 0 | 1 | Pediococcus pentosaceus | species | Increases |
| 1 | 1 | Ligilactobacillus faecis | species | Increases |
| 0 | 1 | Ligilactobacillus ruminis | species | Increases |
| 0 | 1 | Lentilactobacillus parabuchneri | species | Increases |
| 0 | 1 | Loigolactobacillus coryniformis | species | Increases |
| 0 | 1 | Kluyvera ascorbata | species | Increases |
| 0 | 1 | Vibrio gallicus | species | Increases |
| 0 | 1 | Listeria monocytogenes | species | Increases |
| 0 | 1 | Lactiplantibacillus plantarum | species | Increases |
| 0 | 1 | Liquorilactobacillus nagelii | species | Increases |
| 0 | 1 | Fructilactobacillus fructivorans | species | Increases |
| 0 | 1 | Fructilactobacillus lindneri | species | Increases |
| 0 | 1 | Eubacterium ventriosum | species | Increases |
| 0 | 8 | Lactobacillus kefiranofaciens | species | Increases |
| 0 | 2 | Ruminococcus albus | species | Increases |
| 0 | 1 | Comamonas kerstersii | species | Increases |
| 1 | 1 | Ligilactobacillus salivarius | species | Increases |
| 0 | 3 | Roseburia intestinalis | species | Increases |
| 0 | 8 | Lactobacillus amylolyticus | species | Increases |
| 0 | 1 | Companilactobacillus alimentarius | species | Increases |
| 0 | 7 | Bacteroides eggerthii | species | Increases |
| 0 | 1 | Fructilactobacillus sanfranciscensis | species | Increases |
| 0 | 1 | [Clostridium] scindens | species | Increases |
| 0 | 2 | Ruminococcus bromii | species | Increases |
| 0 | 2 | Ruminococcus callidus | species | Increases |
| 0 | 2 | Ruminococcus difficilis | species | Increases |
| 0 | 2 | Ruminococcus flavefaciens | species | Increases |
| 0 | 2 | Ruminococcus hominis | species | Increases |
| 0 | 2 | Ruminococcus intestinalis | species | Increases |
| 0 | 2 | Ruminococcus turbiniformis | species | Increases |
| 0 | 1 | Paucilactobacillus nenjiangensis | species | Increases |
| 0 | 1 | Secundilactobacillus paracollinoides | species | Increases |
| 0 | 1 | Levilactobacillus brevis | species | Increases |
| 0 | 1 | Hungatella hathewayi | species | Increases |
| 0 | 1 | Barnesiella viscericola | species | Increases |
| 1 | 0 | Biostraticola tofi | species | Increases |
| 1 | 0 | Blautia sp. | species | Increases |
| 1 | 2 | Blautia wexlerae | species | Increases |
| 1 | 0 | Burkholderia rinojensis | species | Increases |
| 0 | 1 | Candidatus Saccharimonas aalborgensis | species | Increases |
| 0 | 1 | Furfurilactobacillus rossiae | species | Increases |
| 1 | 0 | Geothrix fermentans | species | Increases |
| 1 | 0 | Lacrimispora aerotolerans | species | Increases |
| 0 | 1 | Marvinbryantia formatexigens | species | Increases |
| 1 | 0 | Mediterraneibacter gnavus | species | Increases |
| 1 | 0 | Murimonas intestini | species | Increases |
| 0 | 1 | Oscillibacter hominis | species | Increases |
| 1 | 0 | Pediococcus stilesii | species | Increases |
| 1 | 0 | Rudaea cellulosilytica | species | Increases |
| 1 | 0 | Salinicoccus carnicancri | species | Increases |
| 0 | 1 | Schleiferilactobacillus harbinensis | species | Increases |
| 1 | 0 | Vibrio sp. | species | Increases |
| 0 | 1 | Apilactobacillus apinorum | species | Increases |
| 0 | 2 | Ruminococcus champanellensis | species | Increases |
| 1 | 1 | Lacticaseibacillus manihotivorans | species | Increases |
| 1 | 1 | Ligilactobacillus hayakitensis | species | Increases |
| 0 | 7 | Bacteroides helcogenes | species | Increases |
| 1 | 1 | Limosilactobacillus reuteri | species | Increases |
| 0 | 7 | Bacteroides faecis | species | Increases |
| 1 | 1 | Ligilactobacillus pobuzihii | species | Increases |
| 1 | 1 | Paucilactobacillus suebicus | species | Increases |
| 1 | 1 | Vibrio cholerae | species | Increases |
| 0 | 19 | Bifidobacterium dentium | species | Increases |
| 0 | 3 | Phocaeicola dorei | species | Increases |
| 0 | 7 | Bacteroides salyersiae | species | Increases |
| 0 | 3 | Bacteroides sp. | species | Increases |
| 0 | 3 | Bacteroides sp. 1_1_14 | species | Increases |
| 0 | 3 | Bacteroides sp. 1_1_30 | species | Increases |
| 0 | 3 | Bacteroides sp. 14(A) | species | Increases |
| 0 | 3 | Bacteroides sp. 1B2 | species | Increases |
| 0 | 3 | Bacteroides sp. 2_1_22 | species | Increases |
| 0 | 3 | Bacteroides sp. 2_1_33B | species | Increases |
| 0 | 3 | Bacteroides sp. 2_2_4 | species | Increases |
| 0 | 3 | Bacteroides sp. 2011_Ileo_VSA_D11 | species | Increases |
| 0 | 3 | Bacteroides sp. 2011_Ileo_VSA_D7 | species | Increases |
| 0 | 3 | Bacteroides sp. 2011_Ileo_VSA_D8 | species | Increases |
| 0 | 3 | Bacteroides sp. 265d | species | Increases |
| 0 | 3 | Bacteroides sp. 3_1_19 | species | Increases |
| 0 | 3 | Bacteroides sp. 3_1_23 | species | Increases |
| 0 | 3 | Bacteroides sp. 3_1_33FAA | species | Increases |
| 0 | 3 | Bacteroides sp. 3_1_40A | species | Increases |
| 0 | 3 | Bacteroides sp. 3_2_5 | species | Increases |
| 0 | 3 | Bacteroides sp. 314-4 | species | Increases |
| 0 | 3 | Bacteroides sp. 31SF15 | species | Increases |
| 0 | 3 | Bacteroides sp. 35AE37 | species | Increases |
| 0 | 3 | Bacteroides sp. 35BE34 | species | Increases |
| 0 | 3 | Bacteroides sp. 35BE35 | species | Increases |
| 0 | 3 | Bacteroides sp. 4_1_36 | species | Increases |
| 0 | 3 | Bacteroides sp. 4_3_47FAA | species | Increases |
| 0 | 3 | Bacteroides sp. 4072 | species | Increases |
| 0 | 3 | Bacteroides sp. 6-8 | species | Increases |
| 0 | 3 | Bacteroides sp. 7853 | species | Increases |
| 0 | 3 | Bacteroides sp. 9_1_42FAA | species | Increases |
| 0 | 3 | Bacteroides sp. A1C1 | species | Increases |
| 0 | 3 | Bacteroides sp. AR20 | species | Increases |
| 0 | 3 | Bacteroides sp. AR29 | species | Increases |
| 0 | 3 | Bacteroides sp. baku-33 | species | Increases |
| 0 | 3 | Bacteroides sp. BLBE-2 | species | Increases |
| 0 | 3 | Bacteroides sp. CB57 | species | Increases |
| 0 | 3 | Bacteroides sp. D1 | species | Increases |
| 0 | 3 | Bacteroides sp. D2 | species | Increases |
| 0 | 3 | Bacteroides sp. D20 | species | Increases |
| 0 | 3 | Bacteroides sp. D22 | species | Increases |
| 0 | 3 | Bacteroides sp. D8 | species | Increases |
| 0 | 3 | Bacteroides sp. DJF_B097 | species | Increases |
| 0 | 3 | Bacteroides sp. dnLKV2 | species | Increases |
| 0 | 3 | Bacteroides sp. dnLKV3 | species | Increases |
| 0 | 3 | Bacteroides sp. dnLKV7 | species | Increases |
| 0 | 3 | Bacteroides sp. dnLKV9 | species | Increases |
| 0 | 3 | Bacteroides sp. EBA5-17 | species | Increases |
| 0 | 3 | Bacteroides sp. ES-27 | species | Increases |
| 0 | 3 | Bacteroides sp. HGA0134 | species | Increases |
| 0 | 3 | Bacteroides sp. HPS0048 | species | Increases |
| 0 | 3 | Bacteroides sp. J1511 | species | Increases |
| 0 | 3 | Bacteroides sp. MANG | species | Increases |
| 0 | 3 | Bacteroides sp. NMBE5 | species | Increases |
| 0 | 3 | Bacteroides sp. R6 | species | Increases |
| 0 | 3 | Bacteroides sp. S-17 | species | Increases |
| 0 | 3 | Bacteroides sp. S-18 | species | Increases |
| 0 | 3 | Bacteroides sp. SLC1-38 | species | Increases |
| 0 | 3 | Bacteroides sp. Smarlab 3301643 | species | Increases |
| 0 | 3 | Bacteroides sp. Smarlab 3302398 | species | Increases |
| 0 | 3 | Bacteroides sp. 'Smarlab BioMol-2301151' | species | Increases |
| 0 | 3 | Bacteroides sp. TP-5 | species | Increases |
| 0 | 3 | Bacteroides sp. UW | species | Increases |
| 0 | 3 | Bacteroides sp. WA1 | species | Increases |
| 0 | 3 | Bacteroides sp. WH302 | species | Increases |
| 0 | 3 | Bacteroides sp. WH305 | species | Increases |
| 0 | 3 | Bacteroides sp. XB12B | species | Increases |
| 0 | 3 | Bacteroides sp. XB44A | species | Increases |
| 0 | 3 | Candidatus [Bacteroides] periocalifornicus | species | Increases |
| 0 | 3 | Phocaeicola barnesiae | species | Increases |
| 0 | 3 | Phocaeicola massiliensis | species | Increases |
| 0 | 3 | Phocaeicola paurosaccharolyticus | species | Increases |
| 0 | 3 | Phocaeicola plebeius | species | Increases |
| 0 | 8 | Lactobacillus acetotolerans | species | Increases |
| 1 | 1 | Lacticaseibacillus porcinae | species | Increases |
| 1 | 1 | Lacticaseibacillus saniviri | species | Increases |
| 1 | 1 | Lentilactobacillus parakefiri | species | Increases |
| 1 | 1 | Secundilactobacillus mixtipabuli | species | Increases |
| 0 | 8 | Lactobacillus amylovorus | species | Increases |
| 0 | 8 | Lactobacillus iners | species | Increases |
| 0 | 2 | Ruminococcus bicirculans (ex Wegman et al. 2014) | species | Increases |
| 1 | 1 | Parabacteroides distasonis | species | Increases |
| 0 | 7 | Bacteroides faecium | species | Increases |
| 0 | 7 | Bacteroides humanifaecis | species | Increases |
| 0 | 7 | Bacteroides caecimuris | species | Increases |
| 0 | 8 | Lactobacillus crispatus | species | Increases |
| 0 | 19 | Bifidobacterium choerinum | species | Increases |
| 0 | 7 | Bacteroides xylanisolvens | species | Increases |
| 0 | 8 | Lactobacillus intestinalis | species | Increases |
| 0 | 7 | Bacteroides luhongzhouii | species | Increases |
| 0 | 7 | Bacteroides uniformis | species | Increases |
| 0 | 7 | Bacteroides ovatus | species | Increases |
| 2 | 7 | Lactobacillus johnsonii | species | Increases |
| 0 | 6 | Bifidobacterium sp. | species | Increases |
| 0 | 6 | Bifidobacterium sp. 113 | species | Increases |
| 0 | 6 | Bifidobacterium sp. 120 | species | Increases |
| 0 | 6 | Bifidobacterium sp. 138 | species | Increases |
| 0 | 6 | Bifidobacterium sp. 65947 | species | Increases |
| 0 | 6 | Bifidobacterium sp. group II-3 | species | Increases |
| 0 | 6 | Bifidobacterium sp. h12 | species | Increases |
| 0 | 6 | Bifidobacterium sp. JCM 6439 | species | Increases |
| 0 | 6 | Bifidobacterium sp. M45 | species | Increases |
| 0 | 6 | Bifidobacterium sp. MC_8 | species | Increases |
| 0 | 6 | Bifidobacterium sp. MSTE12 | species | Increases |
| 0 | 6 | Bifidobacterium sp. MSX5B | species | Increases |
| 0 | 6 | Bifidobacterium sp. N5G01 | species | Increases |
| 0 | 6 | Bifidobacterium sp. PL1 | species | Increases |
| 0 | 8 | Lactobacillus acidophilus | species | Increases |
| 0 | 8 | Lactobacillus paragasseri | species | Increases |
| 0 | 8 | Lactobacillus jensenii | species | Increases |
| 0 | 8 | Lactobacillus gasseri | species | Increases |
| 0 | 9 | Akkermansia massiliensis | species | Increases |
| 0 | 7 | Bacteroides caecigallinarum | species | Increases |
| 0 | 7 | Bacteroides caecimuri | species | Increases |
| 0 | 7 | Bacteroides chinchillae | species | Increases |
| 0 | 7 | Bacteroides clarus | species | Increases |
| 0 | 7 | Bacteroides congonensis | species | Increases |
| 0 | 7 | Bacteroides cutis | species | Increases |
| 0 | 7 | Bacteroides denticanum | species | Increases |
| 0 | 7 | Bacteroides difficilis | species | Increases |
| 0 | 7 | Bacteroides faecalis | species | Increases |
| 0 | 7 | Bacteroides faecichinchillae | species | Increases |
| 0 | 7 | Bacteroides finegoldii | species | Increases |
| 0 | 7 | Bacteroides fluxus | species | Increases |
| 0 | 7 | Bacteroides galacturonicus | species | Increases |
| 0 | 7 | Bacteroides gallinaceum | species | Increases |
| 0 | 7 | Bacteroides gallinarum | species | Increases |
| 0 | 7 | Bacteroides graminisolvens | species | Increases |
| 0 | 7 | Bacteroides ihuae | species | Increases |
| 0 | 7 | Bacteroides ilei | species | Increases |
| 0 | 7 | Bacteroides koreensis | species | Increases |
| 0 | 7 | Bacteroides kribbi | species | Increases |
| 0 | 7 | Bacteroides luti | species | Increases |
| 0 | 7 | Bacteroides mediterraneensis | species | Increases |
| 0 | 7 | Bacteroides muris (ex Fokt et al. 2023) | species | Increases |
| 0 | 7 | Bacteroides ndongoniae | species | Increases |
| 0 | 7 | Bacteroides oleiciplenus | species | Increases |
| 0 | 7 | Bacteroides parvus | species | Increases |
| 0 | 7 | Bacteroides propionicifaciens | species | Increases |
| 0 | 7 | Bacteroides propionicigenes | species | Increases |
| 0 | 7 | Bacteroides pyogenes | species | Increases |
| 0 | 7 | Bacteroides reticulotermitis | species | Increases |
| 0 | 7 | Bacteroides rhinocerotis | species | Increases |
| 0 | 7 | Bacteroides rodentium | species | Increases |
| 0 | 7 | Bacteroides sp | species | Increases |
| 0 | 7 | Bacteroides sp. C13EG172 | species | Increases |
| 0 | 7 | Bacteroides stercorirosoris | species | Increases |
| 0 | 7 | Bacteroides timonensis | species | Increases |
| 0 | 9 | Candidatus Akkermansia intestinavium | species | Increases |
| 0 | 7 | Candidatus Bacteroides intestinigallinarum | species | Increases |
| 2 | 5 | Bacteroides fragilis | species | Increases |
| 0 | 8 | [Lactobacillus] rogosae | species | Increases |
| 0 | 8 | ATCC 15434 | species | Increases |
| 0 | 8 | Lactobacillus alvei | species | Increases |
| 0 | 8 | Lactobacillus animata | species | Increases |
| 0 | 8 | Lactobacillus apis | species | Increases |
| 0 | 8 | Lactobacillus bombicola | species | Increases |
| 0 | 8 | Lactobacillus brevisimilis | species | Increases |
| 0 | 8 | Lactobacillus equicursoris | species | Increases |
| 0 | 8 | Lactobacillus faeni | species | Increases |
| 0 | 8 | Lactobacillus fornicalis | species | Increases |
| 0 | 8 | Lactobacillus gallinarum | species | Increases |
| 0 | 8 | Lactobacillus gigeriorum | species | Increases |
| 0 | 8 | Lactobacillus guizhouensis | species | Increases |
| 0 | 8 | Lactobacillus hamsteri | species | Increases |
| 0 | 8 | Lactobacillus helsingborgensis | species | Increases |
| 0 | 8 | Lactobacillus intermedius | species | Increases |
| 0 | 8 | Lactobacillus japonicus | species | Increases |
| 0 | 8 | Lactobacillus kalixensis | species | Increases |
| 0 | 8 | Lactobacillus kitasatonis | species | Increases |
| 0 | 8 | Lactobacillus kullabergensis | species | Increases |
| 0 | 8 | Lactobacillus leichmannii | species | Increases |
| 0 | 8 | Lactobacillus letivazi | species | Increases |
| 0 | 8 | Lactobacillus mulieris | species | Increases |
| 0 | 8 | Lactobacillus panisapium | species | Increases |
| 0 | 8 | Lactobacillus pasteurii | species | Increases |
| 0 | 8 | Lactobacillus psittaci | species | Increases |
| 0 | 8 | Lactobacillus rodentium | species | Increases |
| 0 | 8 | Lactobacillus selangorensis | species | Increases |
| 0 | 8 | Lactobacillus sp. 7_1_47FAA | species | Increases |
| 0 | 8 | Lactobacillus sp. MYMRS/TEN2 | species | Increases |
| 0 | 8 | Lactobacillus terrae | species | Increases |
| 1 | 6 | Bacteroides acidifaciens | species | Increases |
| 4 | 0 | Phocaeicola vulgatus | species | Increases |
| 1 | 18 | Bifidobacterium pseudocatenulatum | species | Increases |
| 3 | 5 | Bacteroides thetaiotaomicron | species | Increases |
| 1 | 7 | Lactobacillus hominis | species | Increases |
| 1 | 7 | Lactobacillus delbrueckii | species | Increases |
| 0 | 19 | Bifidobacterium angulatum | species | Increases |
| 0 | 19 | Bifidobacterium adolescentis | species | Increases |
| 0 | 18 | Bifidobacterium stercoris | species | Increases |
| 3 | 16 | Bifidobacterium bifidum | species | Increases |
| 0 | 19 | Bifidobacterium actinocoloniiforme | species | Increases |
| 0 | 19 | Bifidobacterium aesculapii | species | Increases |
| 0 | 19 | Bifidobacterium avesanii | species | Increases |
| 0 | 19 | Bifidobacterium biavatii | species | Increases |
| 0 | 19 | Bifidobacterium bohemicum | species | Increases |
| 0 | 19 | Bifidobacterium bombi | species | Increases |
| 0 | 19 | Bifidobacterium boum | species | Increases |
| 0 | 19 | Bifidobacterium callitrichidarum | species | Increases |
| 0 | 19 | Bifidobacterium callitrichos | species | Increases |
| 0 | 19 | Bifidobacterium commune | species | Increases |
| 0 | 19 | Bifidobacterium coryneforme | species | Increases |
| 0 | 19 | Bifidobacterium cuniculi | species | Increases |
| 0 | 19 | Bifidobacterium faecale | species | Increases |
| 0 | 19 | Bifidobacterium gallicum | species | Increases |
| 0 | 19 | Bifidobacterium indicum | species | Increases |
| 0 | 19 | Bifidobacterium magnum | species | Increases |
| 0 | 19 | Bifidobacterium merycicum | species | Increases |
| 0 | 19 | Bifidobacterium minimum | species | Increases |
| 0 | 19 | Bifidobacterium mongoliense | species | Increases |
| 0 | 19 | Bifidobacterium moukalabense | species | Increases |
| 0 | 19 | Bifidobacterium myosotis | species | Increases |
| 0 | 19 | Bifidobacterium porcinum | species | Increases |
| 0 | 19 | Bifidobacterium psychraerophilum | species | Increases |
| 0 | 19 | Bifidobacterium reuteri | species | Increases |
| 0 | 19 | Bifidobacterium ruminantium | species | Increases |
| 0 | 19 | Bifidobacterium simiae | species | Increases |
| 0 | 19 | Bifidobacterium stellenboschense | species | Increases |
| 0 | 19 | Bifidobacterium thermacidophilum | species | Increases |
| 0 | 19 | Bifidobacterium tissieri | species | Increases |
| 0 | 19 | Bifidobacterium tsurumiense | species | Increases |
| 0 | 19 | Bifidobacterium catenulatum | species | Increases |
| 4 | 8 | Akkermansia muciniphila | species | Increases |
| 2 | 18 | Bifidobacterium breve | species | Increases |
| 6 | 18 | Bifidobacterium longum | species | Increases |
| 1 | 1 | Pseudomonas aeruginosa group | species group | Decreases |
| 0 | 2 | Pseudomonas chlororaphis group | species group | Decreases |
| 0 | 2 | Pseudomonas fluorescens group | species group | Decreases |
| 0 | 2 | Pseudomonas putida group | species group | Decreases |
| 0 | 2 | Pseudomonas syringae group | species group | Decreases |
| 0 | 4 | Streptococcus anginosus group | species group | Decreases |
| 0 | 4 | Streptococcus dysgalactiae group | species group | Decreases |
| 0 | 1 | Bacillus cereus group | species group | Decreases |
| 0 | 1 | Burkholderia cepacia complex | species group | Decreases |
| 0 | 1 | Citrobacter freundii complex | species group | Decreases |
| 0 | 1 | Stenotrophomonas maltophilia group | species group | Decreases |
| 0 | 1 | Stutzerimonas stutzeri group | species group | Decreases |
| 0 | 2 | Staphylococcus intermedius group | species group | Decreases |
| 0 | 1 | Bacillus altitudinis complex | species group | Increases |
| 0 | 1 | Bacillus subtilis group | species group | Increases |
| 0 | 1 | Pediococcus acidilactici group | species group | Increases |
| 0 | 1 | pseudomallei group | species group | Increases |
| 0 | 1 | Vibrio harveyi group | species group | Increases |
| 0 | 1 | Vibrio oreintalis group | species group | Increases |
| 0 | 8 | Lactobacillus casei group | species group | Increases |
| 0 | 1 | Pseudomonas nitroreducens/multiresinivorans group | species subgroup | Decreases |
| 0 | 1 | Pseudomonas oleovorans/pseudoalcaligenes group | species subgroup | Decreases |
| 0 | 1 | Corynebacterium casei LMG S-19264 | strain | Decreases |
| 0 | 2 | Streptococcus agalactiae 18RS21 | strain | Decreases |
| 0 | 2 | Streptococcus agalactiae 515 | strain | Decreases |
| 0 | 2 | Streptococcus agalactiae ILRI112 | strain | Decreases |
| 0 | 2 | Streptococcus agalactiae MRI Z1-039 | strain | Decreases |
| 0 | 4 | Clostridium sp. ASF502 | strain | Decreases |
| 0 | 1 | Streptococcus sanguinis SK36 | strain | Decreases |
| 0 | 1 | Rothia dentocariosa ATCC 17931 | strain | Decreases |
| 0 | 1 | Bifidobacterium thermophilum RBL67 | strain | Decreases |
| 0 | 1 | Enterococcus avium ATCC 14025 | strain | Decreases |
| 0 | 1 | Enterococcus faecalis 02-MB-BW-10 | strain | Decreases |
| 0 | 1 | Enterococcus faecalis 06-MB-S-04 | strain | Decreases |
| 0 | 1 | Enterococcus faecalis EnGen0084 | strain | Decreases |
| 0 | 1 | Enterococcus faecalis EnGen0285 | strain | Decreases |
| 0 | 1 | Enterococcus faecalis OG1RF | strain | Decreases |
| 0 | 1 | Enterococcus faecalis str. Symbioflor 1 | strain | Decreases |
| 0 | 1 | Enterococcus faecalis TUSoD Ef11 | strain | Decreases |
| 0 | 1 | Enterococcus faecalis TX4000 | strain | Decreases |
| 0 | 1 | Enterococcus faecalis V583 | strain | Decreases |
| 0 | 1 | Enterococcus hirae ATCC 9790 | strain | Decreases |
| 0 | 1 | Ligilactobacillus acidipiscis DSM 15836 | strain | Decreases |
| 0 | 1 | Ligilactobacillus acidipiscis KCTC 13900 | strain | Decreases |
| 0 | 1 | Rothia dentocariosa M567 | strain | Decreases |
| 0 | 1 | Streptococcus oralis ATCC 35037 | strain | Decreases |
| 0 | 1 | Streptococcus sanguinis SK353 | strain | Decreases |
| 0 | 1 | Streptococcus sanguinis SK405 | strain | Decreases |
| 0 | 1 | Streptococcus sanguinis SK408 | strain | Decreases |
| 0 | 1 | Streptococcus sanguinis SK678 | strain | Decreases |
| 0 | 1 | Turicibacter sanguinis PC909 | strain | Decreases |
| 0 | 1 | Streptococcus oralis Uo5 | strain | Decreases |
| 0 | 2 | Streptococcus agalactiae ILRI005 | strain | Decreases |
| 0 | 1 | Enterococcus faecalis ATCC 29212 | strain | Decreases |
| 0 | 1 | Escherichia albertii KF1 | strain | Decreases |
| 0 | 1 | Enterococcus faecalis ARO1/DG | strain | Decreases |
| 0 | 1 | Enterococcus faecalis DENG1 | strain | Decreases |
| 0 | 1 | Enterococcus faecalis R712 | strain | Decreases |
| 0 | 1 | Enterococcus faecalis D32 | strain | Decreases |
| 0 | 2 | Escherichia coli APEC IMT5155 | strain | Decreases |
| 0 | 2 | Escherichia coli APEC O1 | strain | Decreases |
| 0 | 2 | Escherichia coli APEC O2-211 | strain | Decreases |
| 0 | 2 | Escherichia coli ATCC 8739 | strain | Decreases |
| 0 | 2 | Escherichia coli B str. REL606 | strain | Decreases |
| 0 | 2 | Escherichia coli 'BL21-Gold(DE3)pLysS AG' | strain | Decreases |
| 0 | 2 | Escherichia coli CFT073 | strain | Decreases |
| 0 | 2 | Escherichia coli D9 | strain | Decreases |
| 0 | 2 | Escherichia coli DORA_A_5_14_21 | strain | Decreases |
| 0 | 2 | Escherichia coli E110019 | strain | Decreases |
| 0 | 2 | Escherichia coli ECC-1470 | strain | Decreases |
| 0 | 2 | Escherichia coli ED1a | strain | Decreases |
| 0 | 2 | Escherichia coli FAP1 | strain | Decreases |
| 0 | 2 | Escherichia coli G3/10 | strain | Decreases |
| 0 | 2 | Escherichia coli HS | strain | Decreases |
| 0 | 2 | Escherichia coli HVH 154 (4-5636698) | strain | Decreases |
| 0 | 2 | Escherichia coli HVH 175 (4-3405184) | strain | Decreases |
| 0 | 2 | Escherichia coli IAI39 | strain | Decreases |
| 0 | 2 | Escherichia coli IHE3034 | strain | Decreases |
| 0 | 2 | Escherichia coli K-12 | strain | Decreases |
| 0 | 2 | Escherichia coli KO11FL | strain | Decreases |
| 0 | 2 | Escherichia coli LF82 | strain | Decreases |
| 0 | 2 | Escherichia coli M12 | strain | Decreases |
| 0 | 2 | Escherichia coli M17 | strain | Decreases |
| 0 | 2 | Escherichia coli M8 | strain | Decreases |
| 0 | 2 | Escherichia coli MS 107-1 | strain | Decreases |
| 0 | 2 | Escherichia coli MS 115-1 | strain | Decreases |
| 0 | 2 | Escherichia coli Nissle 1917 | strain | Decreases |
| 0 | 2 | Escherichia coli O15:H11 | strain | Decreases |
| 0 | 2 | Escherichia coli O157:H16 | strain | Decreases |
| 0 | 2 | Escherichia coli O169:H41 | strain | Decreases |
| 0 | 2 | Escherichia coli O178:H19 | strain | Decreases |
| 0 | 2 | Escherichia coli O22:H8 | strain | Decreases |
| 0 | 2 | Escherichia coli P12b | strain | Decreases |
| 0 | 2 | Escherichia coli PCN033 | strain | Decreases |
| 0 | 2 | Escherichia coli PMV-1 | strain | Decreases |
| 0 | 2 | Escherichia coli SE11 | strain | Decreases |
| 0 | 2 | Escherichia coli SE15 | strain | Decreases |
| 0 | 2 | Escherichia coli STEC_DG131-3 | strain | Decreases |
| 0 | 2 | Escherichia coli TW11917 | strain | Decreases |
| 0 | 2 | Escherichia coli UM146 | strain | Decreases |
| 0 | 2 | Escherichia coli UMEA 3271-1 | strain | Decreases |
| 0 | 2 | Escherichia coli UMN026 | strain | Decreases |
| 0 | 2 | Escherichia coli UMNF18 | strain | Decreases |
| 0 | 2 | Escherichia coli UTI89 | strain | Decreases |
| 0 | 2 | Escherichia coli VR50 | strain | Decreases |
| 0 | 1 | Escherichia fergusonii ATCC 35469 | strain | Decreases |
| 0 | 1 | Parabacteroides distasonis CL03T12C09 | strain | Increases |
| 0 | 1 | Mediterraneibacter gnavus ATCC 29149 | strain | Increases |
| 0 | 2 | Lactobacillus johnsonii FI9785 | strain | Increases |
| 0 | 2 | Bifidobacterium breve 689b | strain | Increases |
| 0 | 1 | Clostridium perfringens str. 13 | strain | Increases |
| 0 | 1 | Clostridium perfringens F262 | strain | Increases |
| 0 | 1 | Ligilactobacillus salivarius UCC118 | strain | Increases |
| 0 | 1 | Clostridium perfringens ATCC 13124 | strain | Increases |
| 0 | 1 | Ligilactobacillus salivarius str. Ren | strain | Increases |
| 0 | 2 | Bifidobacterium breve S27 | strain | Increases |
| 0 | 2 | Bifidobacterium breve JCM 7017 | strain | Increases |
| 0 | 2 | Bifidobacterium breve JCM 7019 | strain | Increases |
| 0 | 2 | Bifidobacterium breve 12L | strain | Increases |
| 0 | 1 | Parabacteroides distasonis ATCC 8503 | strain | Increases |
| 0 | 2 | Bifidobacterium breve ACS-071-V-Sch8b | strain | Increases |
| 0 | 1 | [Clostridium] cf. saccharolyticum K10 | strain | Increases |
| 0 | 1 | [Clostridium] saccharolyticum WM1 | strain | Increases |
| 0 | 1 | Bacteroides acidifaciens JCM 10556 | strain | Increases |
| 0 | 1 | Bifidobacterium longum subsp. longum 2-2B | strain | Increases |
| 0 | 1 | Bifidobacterium longum subsp. longum EK13 | strain | Increases |
| 0 | 1 | Bifidobacterium pseudocatenulatum IPLA36007 | strain | Increases |
| 0 | 1 | Blautia wexlerae AGR2146 | strain | Increases |
| 0 | 1 | Clostridium butyricum 60E.3 | strain | Increases |
| 0 | 1 | Clostridium perfringens CP4 | strain | Increases |
| 0 | 1 | Clostridium perfringens JJC | strain | Increases |
| 0 | 1 | Clostridium perfringens NCTC 8239 | strain | Increases |
| 0 | 1 | Clostridium perfringens SM101 | strain | Increases |
| 0 | 1 | Clostridium perfringens WAL-14572 | strain | Increases |
| 0 | 1 | Ligilactobacillus animalis KCTC 3501 = DSM 20602 | strain | Increases |
| 0 | 1 | Ligilactobacillus salivarius CECT 5713 | strain | Increases |
| 0 | 1 | Ligilactobacillus salivarius DSM 20555 = ATCC 11741 | strain | Increases |
| 0 | 1 | Limosilactobacillus reuteri SD2112 | strain | Increases |
| 0 | 1 | Limosilactobacillus reuteri TD1 | strain | Increases |
| 0 | 1 | Mediterraneibacter gnavus AGR2154 | strain | Increases |
| 0 | 1 | Mediterraneibacter gnavus CAG:126 | strain | Increases |
| 0 | 1 | Mediterraneibacter gnavus CC55_001C | strain | Increases |
| 0 | 1 | Mediterraneibacter gnavus E1 | strain | Increases |
| 0 | 1 | Parabacteroides distasonis CL09T03C24 | strain | Increases |
| 0 | 1 | Parabacteroides distasonis str. 3776 D15 iv | strain | Increases |
| 0 | 1 | Parabacteroides distasonis str. 3999B T(B) 4 | strain | Increases |
| 0 | 1 | Parabacteroides distasonis str. 3999B T(B) 6 | strain | Increases |
| 0 | 1 | Veillonella parvula ACS-068-V-Sch12 | strain | Increases |
| 0 | 1 | Veillonella parvula ATCC 17745 | strain | Increases |
| 0 | 1 | Veillonella parvula DSM 2008 | strain | Increases |
| 0 | 1 | Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 | strain | Increases |
| 0 | 1 | Bifidobacterium catenulatum PV20-2 | strain | Increases |
| 0 | 1 | Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854 | strain | Increases |
| 0 | 1 | Veillonella parvula HSIVP1 | strain | Increases |
| 0 | 2 | Bacteroides fragilis HMW 615 | strain | Increases |
| 0 | 2 | Bacteroides fragilis str. 3725 D9 ii | strain | Increases |
| 0 | 2 | Bacteroides fragilis str. 3988T(B)14 | strain | Increases |
| 0 | 2 | Bacteroides fragilis str. 3998 T(B) 4 | strain | Increases |
| 0 | 2 | Bacteroides fragilis str. 3-F-2 #6 | strain | Increases |
| 0 | 2 | Bacteroides fragilis str. I1345 | strain | Increases |
| 0 | 2 | Bifidobacterium bifidum LMG 13195 | strain | Increases |
| 0 | 2 | Bifidobacterium breve 31L | strain | Increases |
| 0 | 2 | Bifidobacterium breve DPC 6330 | strain | Increases |
| 0 | 2 | Bifidobacterium breve DSM 20213 = JCM 1192 | strain | Increases |
| 0 | 2 | Bifidobacterium breve HPH0326 | strain | Increases |
| 0 | 2 | Bifidobacterium breve JCP7499 | strain | Increases |
| 0 | 2 | Lactobacillus johnsonii ATCC 33200 | strain | Increases |
| 0 | 2 | Lactobacillus johnsonii N6.2 | strain | Increases |
| 0 | 2 | Lactobacillus johnsonii NCC 533 | strain | Increases |
| 1 | 0 | Bifidobacterium longum subsp. longum 1-6B | strain | Increases |
| 1 | 0 | Bifidobacterium longum subsp. longum ATCC 55813 | strain | Increases |
| 1 | 0 | Bifidobacterium longum subsp. longum BBMN68 | strain | Increases |
| 1 | 0 | Bifidobacterium longum subsp. longum F8 | strain | Increases |
| 1 | 0 | Bifidobacterium longum subsp. longum GT15 | strain | Increases |
| 1 | 0 | Bifidobacterium longum subsp. longum JCM 1217 | strain | Increases |
| 1 | 0 | Bifidobacterium longum subsp. longum KACC 91563 | strain | Increases |
| 0 | 1 | Blautia wexlerae DSM 19850 | strain | Increases |
| 1 | 1 | Bacteroides fragilis YCH46 | strain | Increases |
| 1 | 1 | Bacteroides thetaiotaomicron VPI-5482 | strain | Increases |
| 1 | 1 | Bacteroides fragilis 638R | strain | Increases |
| 1 | 1 | Bifidobacterium bifidum BGN4 | strain | Increases |
| 0 | 3 | Akkermansia muciniphila CAG:154 | strain | Increases |
| 1 | 1 | Bacteroides fragilis NCTC 9343 | strain | Increases |
| 1 | 1 | Bacteroides fragilis str. 3397 T10 | strain | Increases |
| 1 | 1 | Bacteroides fragilis str. 3976T8 | strain | Increases |
| 1 | 1 | Bacteroides thetaiotaomicron dnLKV9 | strain | Increases |
| 1 | 1 | Bifidobacterium bifidum PRL2010 | strain | Increases |
| 1 | 1 | Bifidobacterium bifidum S17 | strain | Increases |
| 0 | 4 | Phocaeicola vulgatus 274-1D4 | strain | Increases |
| 0 | 4 | Phocaeicola vulgatus CL09T03C04 | strain | Increases |
| 0 | 4 | Phocaeicola vulgatus dnLKV7 | strain | Increases |
| 0 | 4 | Phocaeicola vulgatus RJ2L3 | strain | Increases |
| 0 | 4 | Phocaeicola vulgatus str. 3775 SR(B) 19 | strain | Increases |
| 0 | 4 | Akkermansia muciniphila ATCC BAA-835 | strain | Increases |
| 2 | 2 | Phocaeicola vulgatus ATCC 8482 | strain | Increases |
| 1 | 3 | Phocaeicola vulgatus PC510 | strain | Increases |
| 1 | 3 | Phocaeicola vulgatus str. 3775 SL(B) 10 (iv) | strain | Increases |
| 1 | 3 | Phocaeicola vulgatus str. 3975 RP4 | strain | Increases |
| 1 | 5 | Bifidobacterium longum DJO10A | strain | Increases |
| 0 | 6 | Bifidobacterium longum AGR2137 | strain | Increases |
| 0 | 6 | Bifidobacterium longum D2957 | strain | Increases |
| 0 | 6 | Bifidobacterium longum NCC2705 | strain | Increases |
| 0 | 6 | Bifidobacterium longum subsp. infantis EK3 | strain | Increases |
| 1 | 5 | Bifidobacterium longum subsp. infantis CCUG 52486 | strain | Increases |
| 2 | 4 | Bifidobacterium longum subsp. infantis 157F | strain | Increases |
| 2 | 5 | Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 | strain | Increases |
| 0 | 2 | Actinobacteridae | subclass | Decreases |
| 0 | 2 | Candidatus Actinomarinidae | subclass | Decreases |
| 0 | 1 | Bifidobacterium animalis subsp. lactis | subspecies | Decreases |
| 0 | 1 | Streptococcus oralis subsp. oralis | subspecies | Decreases |
| 0 | 1 | Bifidobacterium animalis subsp. animalis | subspecies | Decreases |
| 0 | 1 | Staphylococcus cohnii subsp. cohnii | subspecies | Decreases |
| 0 | 1 | Streptococcus oralis subsp. tigurinus | subspecies | Decreases |
| 0 | 1 | Streptococcus oralis subsp. dentisani | subspecies | Decreases |
| 0 | 2 | Campylobacter jejuni subsp. doylei | subspecies | Decreases |
| 0 | 2 | Campylobacter jejuni subsp. jejuni | subspecies | Decreases |
| 0 | 1 | Lactobacillus delbrueckii subsp. jakobsenii | subspecies | Increases |
| 0 | 1 | Lactobacillus delbrueckii subsp. allosunkii | subspecies | Increases |
| 0 | 1 | Lactobacillus delbrueckii subsp. delbrueckii | subspecies | Increases |
| 0 | 1 | Lactobacillus delbrueckii subsp. indicus | subspecies | Increases |
| 0 | 1 | Lactobacillus delbrueckii subsp. lactis | subspecies | Increases |
| 0 | 6 | Bifidobacterium longum subsp. suillum | subspecies | Increases |
| 0 | 1 | Limosilactobacillus reuteri subsp. murium | subspecies | Increases |
| 0 | 1 | Limosilactobacillus reuteri subsp. reuteri | subspecies | Increases |
| 0 | 1 | Limosilactobacillus reuteri subsp. rodentium | subspecies | Increases |
| 0 | 1 | Limosilactobacillus reuteri subsp. suis | subspecies | Increases |
| 0 | 1 | Staphylococcus sciuri subsp. sciuri | subspecies | Increases |
| 0 | 1 | Lactobacillus delbrueckii subsp. bulgaricus | subspecies | Increases |
| 1 | 0 | Bifidobacterium catenulatum subsp. kashiwanohense | subspecies | Increases |
| 0 | 6 | Bifidobacterium longum subsp. suis | subspecies | Increases |
| 0 | 6 | Bifidobacterium pullorum subsp. saeculare | subspecies | Increases |
| 0 | 6 | Bifidobacterium pullorum subsp. gallinarum | subspecies | Increases |
| 1 | 6 | Bifidobacterium longum subsp. longum | subspecies | Increases |
| 7 | 7 | Bifidobacterium longum subsp. infantis | subspecies | Increases |
| 0 | 2 | Crotalarieae | tribe | Decreases |
| 0 | 1 | Bacillini | tribe | Increases |
A higher number indicates impact on more bacteria associated with the condition and confidence on the impact.
We have X bacteria high and Y low reported. We find that the modifier reduces some and increases other of these two groups. We just tally: X|reduces + Y|Increase = Positive X|increases + Y|decrease = Negative.
Benefit Ratio:
Numbers above 0 have increasing positive effect.
Numbers below 0 have increasing negative effect.
| Condition | Positive Impact | Negative Impact | Benefit Ratio Impact |
|---|---|---|---|
| Abdominal Aortic Aneurysm | 0.6 | 0.9 | -0.5 |
| Acne | 3.3 | 1.3 | 1.54 |
| Addison's Disease (hypocortisolism) | 0.5 | 0.5 | |
| ADHD | 4.1 | 9.8 | -1.39 |
| Age-Related Macular Degeneration and Glaucoma | 0.9 | 0.8 | 0.13 |
| Allergic Rhinitis (Hay Fever) | 7.2 | 7.2 | 0 |
| Allergies | 13.3 | 12.8 | 0.04 |
| Allergy to milk products | 4.9 | 5.2 | -0.06 |
| Alopecia (Hair Loss) | 2.3 | 2.9 | -0.26 |
| Alzheimer's disease | 16.9 | 18.7 | -0.11 |
| Amyotrophic lateral sclerosis (ALS) Motor Neuron | 2.9 | 9.4 | -2.24 |
| Ankylosing spondylitis | 7.2 | 8.7 | -0.21 |
| Anorexia Nervosa | 4.1 | 5.3 | -0.29 |
| Antiphospholipid syndrome (APS) | 1.2 | 1.1 | 0.09 |
| Asthma | 8.6 | 7.8 | 0.1 |
| Atherosclerosis | 6.2 | 3.5 | 0.77 |
| Atrial fibrillation | 6.6 | 7.6 | -0.15 |
| Autism | 21 | 18.9 | 0.11 |
| Autoimmune Disease | 3 | 2 | 0.5 |
| Barrett esophagus cancer | 0.7 | 1.6 | -1.29 |
| benign prostatic hyperplasia | 1.2 | 0.7 | 0.71 |
| Biofilm | 3.3 | 2.4 | 0.38 |
| Bipolar Disorder | 4.5 | 6.6 | -0.47 |
| Brain Trauma | 4.8 | 2.4 | 1 |
| Breast Cancer | 2.5 | 2.4 | 0.04 |
| Cancer (General) | 5.4 | 3.6 | 0.5 |
| Carcinoma | 8 | 8.3 | -0.04 |
| Celiac Disease | 10.7 | 8.6 | 0.24 |
| Cerebral Palsy | 3.4 | 3.1 | 0.1 |
| Chronic Fatigue Syndrome | 10.7 | 8.6 | 0.24 |
| Chronic Kidney Disease | 5.6 | 7.3 | -0.3 |
| Chronic Lyme | 0.7 | 0 | 0 |
| Chronic Obstructive Pulmonary Disease (COPD) | 8.4 | 3.2 | 1.63 |
| Chronic Urticaria (Hives) | 3.8 | 0.7 | 4.43 |
| Coagulation / Micro clot triggering bacteria | 3.1 | 2.4 | 0.29 |
| Cognitive Function | 6.7 | 8 | -0.19 |
| Colorectal Cancer | 13.2 | 15.4 | -0.17 |
| Constipation | 5.2 | 3.8 | 0.37 |
| Coronary artery disease | 5.1 | 5.3 | -0.04 |
| COVID-19 | 25.5 | 17.5 | 0.46 |
| Crohn's Disease | 17.8 | 19.1 | -0.07 |
| Cushing's Syndrome (hypercortisolism) | 1.2 | 0 | 0 |
| cystic fibrosis | 3.8 | 1.2 | 2.17 |
| d-lactic acidosis (one form of brain fog) | 1 | 5 | -4 |
| deep vein thrombosis | 4.5 | 3.9 | 0.15 |
| Denture Wearers Oral Shifts | 3.8 | 0.5 | 6.6 |
| Depression | 25.6 | 23.7 | 0.08 |
| Dermatomyositis | 1.3 | 2.1 | -0.62 |
| Eczema | 3.7 | 3.3 | 0.12 |
| Endometriosis | 7.3 | 5.7 | 0.28 |
| Eosinophilic Esophagitis | 1.6 | 2.4 | -0.5 |
| Epilepsy | 8.9 | 7.6 | 0.17 |
| erectile dysfunction | 1.8 | 2.2 | -0.22 |
| Fibromyalgia | 4.7 | 5.5 | -0.17 |
| Functional constipation / chronic idiopathic constipation | 10.6 | 12.4 | -0.17 |
| gallstone disease (gsd) | 6.5 | 3.5 | 0.86 |
| Gastroesophageal reflux disease (Gerd) including Barrett's esophagus | 4.5 | 3.2 | 0.41 |
| Generalized anxiety disorder | 6.4 | 7 | -0.09 |
| giant cell arteritis | 0.2 | 0.3 | -0.5 |
| Glioblastoma | 0.6 | 1.6 | -1.67 |
| Gout | 4.4 | 4.9 | -0.11 |
| Graves' disease | 4.3 | 6.7 | -0.56 |
| Gulf War Syndrome | 4.2 | 1.5 | 1.8 |
| Halitosis | 1 | 4.9 | -3.9 |
| Hashimoto's thyroiditis | 5 | 7.8 | -0.56 |
| Heart Failure | 9.5 | 7.6 | 0.25 |
| hemorrhagic stroke | 0.4 | 2 | -4 |
| Hemorrhoidal disease, Hemorrhoids, Piles | 0.4 | 0.4 | |
| Hidradenitis Suppurativa | 3.4 | 2 | 0.7 |
| High Histamine/low DAO | 3.2 | 1.7 | 0.88 |
| hypercholesterolemia (High Cholesterol) | 2.4 | 2.3 | 0.04 |
| hyperglycemia | 6.4 | 1.5 | 3.27 |
| Hyperlipidemia (High Blood Fats) | 5.9 | 4.3 | 0.37 |
| hypersomnia | 3.3 | 2 | 0.65 |
| hypertension (High Blood Pressure | 13.9 | 16.2 | -0.17 |
| Hypothyroidism | 3 | 4.2 | -0.4 |
| Hypoxia | 2.8 | 3.4 | -0.21 |
| IgA nephropathy (IgAN) | 5.8 | 5.3 | 0.09 |
| Inflammatory Bowel Disease | 19.9 | 13 | 0.53 |
| Insomnia | 5.6 | 7.2 | -0.29 |
| Intelligence | 3.4 | 2.3 | 0.48 |
| Intracranial aneurysms | 4.5 | 4.1 | 0.1 |
| Irritable Bowel Syndrome | 15.2 | 13.8 | 0.1 |
| ischemic stroke | 6 | 7.1 | -0.18 |
| Juvenile idiopathic arthritis | 1.8 | -1.8 | |
| Liver Cirrhosis | 13.1 | 14 | -0.07 |
| liver fibrosis | 0.5 | 0.5 | |
| Long COVID | 25.9 | 16.7 | 0.55 |
| Low bone mineral density | 2.1 | 1.3 | 0.62 |
| Lung Cancer | 4.2 | 1.1 | 2.82 |
| Lymphoma | 1.6 | 0.6 | 1.67 |
| Mast Cell Issues / mastitis | 5.3 | 1.2 | 3.42 |
| ME/CFS with IBS | 1.6 | 1.2 | 0.33 |
| ME/CFS without IBS | 3.4 | 1.7 | 1 |
| membranous nephropathy | 0.3 | 0.6 | -1 |
| Menopause | 2.2 | 2.5 | -0.14 |
| Metabolic Syndrome | 21.7 | 21.4 | 0.01 |
| Mood Disorders | 22.2 | 24.1 | -0.09 |
| multiple chemical sensitivity [MCS] | 0.8 | 1 | -0.25 |
| Multiple Sclerosis | 11.3 | 10.3 | 0.1 |
| Multiple system atrophy (MSA) | 1.5 | 2.6 | -0.73 |
| myasthenia gravis | 2.5 | 1.6 | 0.56 |
| neuropathic pain | 3.1 | 1 | 2.1 |
| Neuropathy (all types) | 2.7 | 3.3 | -0.22 |
| neuropsychiatric disorders (PANDAS, PANS) | 1.1 | 3.7 | -2.36 |
| Nonalcoholic Fatty Liver Disease (nafld) Nonalcoholic | 16.7 | 12.4 | 0.35 |
| NonCeliac Gluten Sensitivity | 3.6 | 2.5 | 0.44 |
| Obesity | 27.9 | 22.5 | 0.24 |
| obsessive-compulsive disorder | 9.8 | 9.2 | 0.07 |
| Osteoarthritis | 3.4 | 5.5 | -0.62 |
| Osteoporosis | 7.9 | 6.6 | 0.2 |
| pancreatic cancer | 4.3 | 2 | 1.15 |
| Parkinson's Disease | 20.6 | 17.2 | 0.2 |
| Peanut Allergy | 1 | 1 | |
| Polycystic ovary syndrome | 10.6 | 13.7 | -0.29 |
| Postural orthostatic tachycardia syndrome | 0.6 | 0.2 | 2 |
| Premenstrual dysphoric disorder | 1.2 | 0.7 | 0.71 |
| primary biliary cholangitis | 2.5 | 4.4 | -0.76 |
| Primary sclerosing cholangitis | 5.9 | 3.7 | 0.59 |
| Psoriasis | 7.1 | 3.1 | 1.29 |
| rheumatoid arthritis (RA),Spondyloarthritis (SpA) | 14.9 | 13.5 | 0.1 |
| Rosacea | 3.6 | 3.5 | 0.03 |
| Schizophrenia | 11.4 | 14.2 | -0.25 |
| scoliosis | 0.9 | 1.5 | -0.67 |
| sensorineural hearing loss | 2 | 0.3 | 5.67 |
| Sjögren syndrome | 6.2 | 4.1 | 0.51 |
| Sleep Apnea | 5.5 | 2.4 | 1.29 |
| Slow gastric motility / Gastroparesis | 2.4 | 1.8 | 0.33 |
| Small Intestinal Bacterial Overgrowth (SIBO) | 3.3 | 2.8 | 0.18 |
| Stress / posttraumatic stress disorder | 5.9 | 4.8 | 0.23 |
| Systemic Lupus Erythematosus | 10.6 | 8 | 0.32 |
| Tic Disorder | 2.5 | 2.2 | 0.14 |
| Tourette syndrome | 1.3 | 1.4 | -0.08 |
| Type 1 Diabetes | 10.4 | 9.4 | 0.11 |
| Type 2 Diabetes | 18.6 | 17.8 | 0.04 |
| Ulcerative colitis | 21.1 | 14 | 0.51 |
| Unhealthy Ageing | 7.3 | 6.2 | 0.18 |
| Vitiligo | 3.7 | 2.6 | 0.42 |
Explanations /Info /Descriptions are influenced by Large Language Models and may not be accurate and include some hallucinations.Please report any to us for correction.
Copyright 2016 - 2025 Lassesen Consulting, LLC[2007], DBA, Microbiome Prescription All rights served. Permission to data scrap or reverse engineer is explicitly denied to all users.U.S.Code Title 18 PART I CHAPTER 47 Β§β―1030, CETS No.185, CFAA Use of data on this site is prohibited except under written license.There is no charge for individual personal use.Use for any commercial applications or research requires a written license. Caveat emptor: Analysis and suggestions are based on modelling(and thus infererence ) based on studies.The data sources are usually given for those that wish to consider alternative inferences.theories and models. Inventions /Methodologies on this site are Patent Pending.
Microbiome Prescription do not make any representations that data or analyses available on this site is suitable for human diagnostic purposes, for informing treatment decisions,
or for any other purposes and accept no responsibility or liability whatsoever for such use.
This site is not in strict compliance with Personal Health Information Laws. [216.73.216 ]