This site may require a log-in in the near future. We are constantly being swamped by AI agents. If they continue to take down the site, we will be changing to requiring logins to access any item.

Always note the time that you took your sample, if you want to accurately compare samples later, future samples should be taken at the same time! Why? Read this post.

What the file contents should look like

#TAXON 42475382 d__Bacteria;p__Acidobacteriota;c__nan;o__nan 0.0
d__Bacteria;p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales 0.0004
d__Bacteria;p__Actinobacteriota;c__Actinobacteria;o__Bifidobacteriales 0.0007
d__Bacteria;p__Actinobacteriota;c__Actinobacteria;o__Corynebacteriales 5e-05

Microba Microbiome Uploads

This is still a work in progress

If you encounter issues, email the file to Research@MicrobiomePrescription.com. Thanks. Providers keep changing formats :-(

The FOUR files are required. A Phylum, a Family, a Genus and a Species file. See this short video on how to obtain them.
See for a discussion of the problems with the data.

It has been reported that Microba no longer provides anything except Species files. We have change the code to support this upload but many features are disabled because the data is just too incomplete.

Phylum File to upload ?_phylum.tsv
Order File to upload ?_order.tsv
Class File to upload ?_class.tsv
Family File to upload ?_family.tsv
Genus File to upload ?_family.tsv
Species File to upload ?_species.tsv
Uploader Email
When Sample was taken
If this is not my own sample, I have legal authority to upload it. ⚖️

Notice

Microba use non-standard naming, i.e. many names will not be found, as written, on the NCBI Taxonomy Browser that this site uses as a gold standard.

This is done with best automated efforts.

If you encounter any issues, please email Research@MicrobiomePrescription.com attaching your FOUR files. Note that your numbers may slightly changed as we improve Microba's bacteria name mapping to the NCMI Hierarchy names and Taxon Numbers.


By uploading, you consent to allow your microbiome data and symptoms to be made available to citizen scientists for further discoveries. If you wish to be anonymous and use this site, it is recommended that you enter a bogus email address and use that email address to access your data later. You will be shown the login information once after upload -- make sure that you copy it down if using a bogus email.

Explanations /Info /Descriptions are influenced by Large Language Models and may not be accurate and include some hallucinations.Please report any to us for correction.

Copyright 2016 - 2025 Lassesen Consulting, LLC[2007], DBA, Microbiome Prescription All rights served.   Permission to data scrap or reverse engineer is explicitly denied to all users.U.S.Code Title 18 PART I CHAPTER 47 § 1030, CETS No.185, CFAA   Use of data on this site is prohibited except under written license.There is no charge for individual personal use.Use for any commercial applications or research requires a written license.   Caveat emptor: Analysis and suggestions are based on modelling(and thus infererence ) based on studies.The data sources are usually given for those that wish to consider alternative inferences.theories and models.   Inventions /Methodologies on this site are Patent Pending.

Microbiome Prescription do not make any representations that data or analyses available on this site is suitable for human diagnostic purposes, for informing treatment decisions, or for any other purposes and accept no responsibility or liability whatsoever for such use.
This site is not in strict compliance with Personal Health Information Laws. [216.73.216 ]