We use a subjective scale and leave the reader to translate the lab reports appropriately. If the bacteria are identified as bad/pathogenic and you are low, then do not enter them.
Bacteria Reported Level Also Known as Comment
Bacillus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Bacillus| Bacillus Cohn 1872| Bacillus rRNA group 1
Pathogen
Enterococcus faecalis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Enterococcus proteiformis" Thiercelin and Jouhaud 1903| "Enterocoque" Thiercelin 1902| "Micrococcus ovalis" Escherich 1886| "Micrococcus zymogenes" MacCallum and Hastings 1899| "Streptococcus glycerinaceus" Orla-Jensen 1919| "Streptococcus liquefaciens" Sternberg 1892| ATCC 19433| ATCC 19433-U| CCUG 19916| CIP 103015| DSM 20478| Enterococcus faecalis| Enterococcus faecalis (Andrewes and Horder 1906) Schleifer and Kilpper-Balz 1984| Enterococcus proteiformis| Enterococcus sp. 7L76| Enterococcus sp. KB1| Enterocoque| HAMBI 1711| JCM 5803| JCM 8726| LMG 7937| LMG:7937| Micrococcus ovalis| Micrococcus zymogenes| NBRC 100480| NBRC 100481| NCAIM B.01312| NCDO 581| NCIMB 775| NCTC 775| Streptococcus faecalis| Streptococcus faecalis Andrewes and Horder 1906 (Approved Lists 1980)| Streptococcus glycerinaceus| Streptococcus liquefaciens
Endocarditis, septicemia, urinary tract infections, meningitis
Enterococcus faecium [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 19434| CCUG 542| CFBP 4248| CIP 103014| DSM 20477| Enterococcus faecium| Enterococcus faecium (Orla-Jensen 1919) Schleifer and Kilpper-Balz 1984| HAMBI 1710| JCM 5804| JCM 8727| LMG 11423| LMG:11423| NBRC 100485| NBRC 100486| NCDO 942| NCIMB 11508| NCTC 7171| Streptococcus faecium| Streptococcus faecium Orla-Jensen 1919 (Approved Lists 1980)
Pathogen
Morganella [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Morganella| Morganella Fulton 1943
Pathogen
Pseudomonas [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Chlorobacterium" Guillebeau 1890, nom. rejic. Opin. 6 (not "Chlorobacterium" Lauterborn 1916)| "Liquidomonas" Orla-Jensen 1909| "Loefflerella" Holden 1935| Chryseomonas| Chryseomonas Holmes et al. 1986| Flavimonas| Liquidomonas| Loefflerella| Pseudomonas| Pseudomonas Migula 1894 emend. Yang et al. 2013| RNA similarity group I| Serpens| Serpens Hespell 1977
Pseudomonas aeruginosa [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885| "Bacillus pyocyaneus" (Zopf 1884) Flugge 1886| "Bacterium aeruginosum" Cohn 1872| "Bacterium aeruginosum" Schroeter 1872| "Bacterium pyocyaneum" (Zopf 1884) Lehmann and Neumann 1896| "Micrococcus pyocyaneus" Zopf 1884| "Pseudomonas pyocyanea" (Zopf 1884) Migula 1895| ATCC 10145| ATCC 10145-U| Bacillus aeruginosus| Bacillus pyocyaneus| Bacterium aeruginosum| bacterium ASFP-37| bacterium ASFP-38| bacterium ASFP-45| bacterium ASFP-46| bacterium ASFP-48| bacterium CRM125| Bacterium pyocyaneum| CCEB 481| CCUG 28447| CCUG 29297| CCUG 551| CFBP 2466| CIP 100720| DSM 50071| IBCS 277| IFO 12689| JCM 5962| LMG 1242| LMG:1242| Micrococcus pyocyaneus| NBRC 12689| NCCB 76039| NCIB 8295| NCIB:8295| NCIMB 8295| NCTC 10332| NRRL B-771| probable synonym or variety: "Pseudomonas polycolor" Clara 1930| Pseudomonas aeruginosa| Pseudomonas aeruginosa (Schroeter 1872) Migula 1900| Pseudomonas polycolor| Pseudomonas pyocyanea| Pseudomonas sp. 2_1_26| Pseudomonas sp. ACP_02| Pseudomonas sp. CRRI 93| Pseudomonas sp. HSA1/2016| Pseudomonas sp. NCIM 2036| Pseudomonas sp. NCIM 2862| Pseudomonas sp. PR_01| Pseudomonas sp. PSE5| Pseudomonas sp. RV3| Pseudomonas sp. UFT2/2016| RH 815| VKM B-588
Opportunistic, nosocomial pneumonia and sepsis
Staphylococcus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Aurococcus" Winslow and Rogers 1906| Aurococcus| Staphylococcus| Staphylococcus Rosenbach 1884
Staphylococcus aureus [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Micrococcus aureus" (Rosenbach 1884) Zopf 1885| "Micrococcus pyogenes" Lehmann and Neumann 1896| "Staphlococcus pyogenes citreus" Passet 1885| "Staphylococcus pyogenes aureus" Rosenbach 1884| ATCC 12600| ATCC 12600-U| CCM 885| CCUG 1800| CIP 65.8| DSM 20231| HAMBI 66| JCM 20624| Micrococcus aureus| Micrococcus pyogenes| NBRC 100910| NCAIM B.01065| NCCB 72047| NCTC 8532| Staphlococcus pyogenes citreus| Staphylococcus aureus| Staphylococcus aureus Rosenbach 1884| Staphylococcus pyogenes aureus
Skin infections, sinusitis, food poisoning
Streptococcus agalactiae [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Streptoccocus de la mammite" Nocard and Mollereau 1887| "Streptococcus agalactiae contagiosae" Kitt 1893| "Streptococcus mastitidis" Migula 1900| ATCC 13813| ATCC 51487 [[Streptococcus difficilis corrig. Eldar et al. 1995]]| CCUG 4208| CIP 103227| CIP 103768 [[Streptococcus difficilis corrig. Eldar et al. 1995]]| DSM 2134| JCM 5671| LMG 14694| LMG 15977 [[Streptococcus difficilis corrig. Eldar et al. 1995]]| LMG:14694| LMG:15977 [[Streptococcus difficilis corrig. Eldar et al. 1995]]| NCTC 8181| strain ND 2-22 [[Streptococcus difficilis corrig. Eldar et al. 1995]]| Streptoccocus de la mammite| Streptococcus agalactiae| Streptococcus agalactiae contagiosae| Streptococcus agalactiae Lehmann and Neumann 1896| Streptococcus difficile| Streptococcus difficilis| Streptococcus difficilis corrig. Eldar et al. 1995| Streptococcus mastitidis
Postpartum infection, neonatal sepsis
Streptococcus anginosus [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Streptococcus anginosus" Andrewes and Horder 1906| ATCC 33397| CCUG 27298| CCUG 35776| CIP 102921| DSM 20563| HAMBI 1525| JCM 12993| LMG 14502| LMG:14502| NCTC 10713| strain SK 52| Streptococcus anginosus| Streptococcus anginosus (Andrewes and Horder 1906) Smith and Sherman 1938 (Approved Lists 1980) emend. Coykendall et al. 1987| Streptococcus anginosus (Andrewes and Horder 1906) Smith and Sherman 1938 (Approved Lists 1980) emend. Whiley and Beighton 1991
H01443 Viridans group streptococcal infection
Streptococcus mutans [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 25175| CCUG 11877| CCUG 17824| CCUG 6519| CIP 103220| DSM 20523| HAMBI 1519| IFO 13955| JCM 5705| LMG 14558| LMG:14558| NBRC 13955| NCTC 10449| Streptococcus mutans| Streptococcus mutans Clarke 1924
Tooth decay
Streptococcus oralis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 35037| CCUG 13229| CCUG 24891| CIP 102922| DSM 20627| JCM 12997| LMG 14532| LMG:14532| NCTC 11427| strain LVG 1| strain PB 182| strain SK23| Streptococcus oralis| Streptococcus oralis Bridge and Sneath 1982 emend. Jensen et al. 2016| Streptococcus oralis Bridge and Sneath 1982 emend. Kilian et al. 1989| Streptococcus oralis Bridge and Sneath 1982 emend. Kilpper-Balz et al. 1985
Infectious bacteria
Streptococcus salivarius [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 7073| CCUG 11878| CCUG 17825| CCUG 50207| CIP 102503| DSM 20560| HAMBI 1716| JCM 5707| LMG 11489| LMG:11489| NCFB 1779| NCIMB 701779| NCTC 8618| Streptococcus salivarius| Streptococcus salivarius Andrewes and Horder 1906| Streptococcus salivarius subsp. salivarius| Streptococcus salivarius subsp. salivarius Andrewes and Horder 1906| Streptococcus sp. FStet12| Streptococcus sp. HSISS4
Infectious bacteria
Methanobrevibacter smithii [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 35061| DSM 861| Methanobrevibacter smithii| Methanobrevibacter smithii Balch and Wolfe 1981| OCM 144| strain PS
High Levels linked to long-lived individuals
Desulfovibrio piger [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 29098| Desulfomonas pigra| Desulfomonas pigra Moore et al. 1976| Desulfovibrio piger| Desulfovibrio piger (Moore et al. 1976) Loubinoux et al. 2002| DSM 749
Enterobacter cloacae [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Aerobacter cloacae" (Jordan 1890) Bergey et al. 1923| "Aerobacter cloacae" (Jordan 1890) Hormaeche and Edwards 1958| "Bacillus cloacae" Jordan 1890| "Bacterium cloacae" (Jordan 1890) Lehmann and Neumann 1896| "Cloaca cloacae" (Jordan 1890) Castellani and Chalmers 1919| 'Enterobacter hormaechei subsp. grimontii'| Achromobacter sp. ATCC13047| Aerobacter cloacae| ATCC 13047| Bacillus cloacae| Bacterium cloacae| CCUG 28448| CCUG 29301| CCUG 6323| CIP 60.85| Cloaca cloacae| DSM 30054| Enterobacter cloacae| Enterobacter cloacae (Jordan 1890) Hormaeche and Edwards 1960| Enterobacter hormaechei subsp. grimontii| Enterobacter sp. DIV140| Enterobacter sp. DIV160| Enterobacter sp. DIV167| Enterobacter sp. ES-2| Enterobacter sp. JS08.Deg01| Enterobacter sp. NCIM 2164| Enterobacter sp. PX-A-E.1| HAMBI 1295| HAMBI 96| IFO 13535| JCM 1232| Klebsiella sp. SBP-8| LMG 2783| LMG:2783| NBRC 13535| NCTC 10005
Citrobacter [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Citrobacter| Citrobacter Werkman and Gillen 1932| Levinea| Levinea Young et al. 1971
Pathogen
Citrobacter freundii [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacterium freundii" Braak 1928| "Escherichia freundii" (Braak 1928) Yale 1939| "Salmonella ballerup" Kauffmann and Mller 1940| "Salmonella hormaechei" Monteverde 1944| ATCC 8090| Bacterium freundii| CCUG 418| CIP 57.32| Citrobacter ballerupensis| Citrobacter freundii| Citrobacter freundii (Braak 1928) Werkman and Gillen 1932| Citrobacter sp. HPC1276| Citrobacter sp. KDS 3| DSM 30039| Escherichia freundii| HAMBI 1695| IFO 12681| JCM 1657| LMG 3246| LMG:3246| NBRC 12681| NCAIM B.01468| NCTC 9750| NRRL B-2643| Salmonella ballerup| Salmonella hormaechei| the Ballerup group of bacteria| the Bethesda group of bacteria
Klebsiella [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Donovania" Anderson et al. 1944| "Hyalococcus" Schroeter 1886| Calymmatobacterium| Calymmatobacterium Aragao and Vianna 1913| Donovania| Hyalococcus| Klebsiella| Klebsiella Trevisan 1885 (Approved Lists 1980) emend. Carter et al. 1999| Klebsiella Trevisan 1885 (Approved Lists 1980) emend. Drancourt et al. 2001
Pathogen
Klebsiella pneumoniae [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacillus pneumoniae" (Schroeter 1886) Flugge 1886| "Bacterium pneumoniae crouposae" Zopf 1885| "Hyalococcus pneumoniae" Schroeter 1886| 'Klebsiella aerogenes' (Kruse) Taylor et al. 1956| ATCC 13883| Bacillus pneumoniae| Bacterium pneumoniae crouposae| CCUG 225| CIP 82.91| DSM 30104| HAMBI 450| Hyalococcus pneumoniae| IFO 14940| JCM 1662| Klebsiella pneumoniae| Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887| Klebsiella pneumoniae aerogenes| Klebsiella sp. 2N3| Klebsiella sp. C1(2016)| Klebsiella sp. M-AI-2| Klebsiella sp. PB12| Klebsiella sp. RCE-7| LMG 2095| LMG:2095| NBRC 14940| NCTC 9633
H00301 Klebsiella infection, Pneumonia
Segatella copri [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| DSM 18205| JCM 13464| Prevotella copri| Prevotella copri Hayashi et al. 2007 emend. Hahnke et al. 2016| Prevotella sp. 'Indica Stool'| Prevotella sp. CB18| Prevotella sp. CB23| Prevotella sp. CB26| Prevotella sp. CB28| Prevotella sp. CB7| strain CB7
Over 70%ile Indicator of mycotoxin present
Proteus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Liquidobacterium" Orla-Jensen 1908| Liquidobacterium| Proteus| Proteus Hauser 1885 (Approved Lists 1980) emend. Hyun et al. 2016
Opportunistic urinary tract infections
Proteus mirabilis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 29906| CCUG 26767| CIP 103181| DSM 4479| JCM 1669| LMG 3257| LMG:3257| NCTC 11938| Proteus mirabilis| Proteus mirabilis Hauser 1885
Fusobacterium [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Fusibacterium| Fusobacterium| Fusobacterium Knorr 1922
Periodontal disease, Lemierre syndrome, skin ulcers
Candida dubliniensis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Nakaseomyces glabratus [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Pichia kudriavzevii [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Clavispora lusitaniae [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Candida parapsilosis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Candida tropicalis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Candida albicans [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Debaryomyces hansenii [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Kluyveromyces marxianus [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Yarrowia lipolytica [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Geotrichum [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Rhodotorula [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Saccharomyces cerevisiae [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 18824| baker's yeast| brewer's yeast| Candida robusta| CBS 1171| NRRL Y-12632| S. cerevisiae| Saccharomyces capensis| Saccharomyces cerevisiae| Saccharomyces italicus| Saccharomyces oviformis| Saccharomyces uvarum var. melibiosus
Aeromonas hydrophila [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Aeromonas liquefaciens" Kluyver and van Niel 1936| "Bacillus hydrophilus fuscus" Sanarelli 1871| "Bacillus hydrophilus" Chester 1901| "Bacterium hydrophilum" (Chester 1901) Weldin and Levine 1923| "Proteus hydrophilus" (Chester 1901) Bergey et al. 1923| "Pseudomonas hydrophila" (Chester 1901) Breed et al. 1948| Aeromonas dourgesi| Aeromonas hydrophila| Aeromonas hydrophila (Chester 1901) Stanier 1943 (Approved Lists 1980) emend. Beaz-Hidalgo et al. 2013| Aeromonas liquefaciens| Aeromonas sp. E20| Aeromonas sp. G17| Aeromonas sp. TH001| Aeromonas sp. TH003| Aeromonas sp. TH019| Aeromonas sp. TH020| Aeromonas sp. TH021| Aeromonas sp. TH022| Aeromonas sp. TH023| Aeromonas sp. TH024| Aeromonas sp. TH025| Aeromonas sp. TH026| Aeromonas sp. TH027| Aeromonas sp. TH028| Aeromonas sp. TH029| Aeromonas sp. TH030| Aeromonas sp. TH031| Aeromonas sp. TH033| Aeromonas sp. TH034| Aeromonas sp. TH036| Aeromonas sp. TH054| Aeromonas sp. TH055| Aeromonas sp. TH058| Aeromonas sp. TH068| Aeromonas sp. TH069| Aeromonas sp. TH071| Aeromonas sp. TH072| Aeromonas sp. TH083| Aeromonas sp. TH084| Aeromonas sp. TH085| Aeromonas sp. TH097| Aeromonas sp. TH100| Aeromonas sp. TH102| Aeromonas sp. TH104| Aeromonas sp. TH105| Aeromonas sp. TH107| Aeromonas sp. TH108| Aeromonas sp. TH109| Aeromonas sp. TH110| Aeromonas sp. TH113| Aeromonas sp. TH115| Aeromonas sp. TH117| Aeromonas sp. TH118| Aeromonas sp. TH120| Aeromonas sp. TH121| Aeromonas sp. TH122| Aeromonas sp. TH123| Aeromonas sp. TH124| Aeromonas sp. TH125| Aeromonas sp. TH126| Aeromonas sp. TH127| Aeromonas sp. TH128| Aeromonas sp. TH129| Aeromonas sp. TH130| Aeromonas sp. TH131| Aeromonas sp. TH132| Aeromonas sp. TH133| Aeromonas sp. TH134| Aeromonas sp. TH135| Aeromonas sp. TH136| Aeromonas sp. TH137| Aeromonas sp. TH138| Aeromonas sp. TH139| Aeromonas sp. TH140| Aeromonas sp. TH141| Aeromonas sp. TH142| ATCC 7966| Bacillus hydrophilus| Bacillus hydrophilus fuscus| Bacterium hydrophilum| BCRC 13018| CCRC 13018| CCRC:13018| CCUG 14551| CDC 359-60| CECT 839| CIP 76.14| DSM 30187| HAMBI 1847| HAMBI 1973| IAM 12460| JCM 1027| LMG 12156| LMG 13439| LMG 2844| LMG:12156| LMG:13439| LMG:2844| NCIMB 9240| NCTC 8049| Proteus hydrophilus| Proteus ichthyosmius| Pseudomonas hydrophila
Dysenteric gastroenteritis
Campylobacter [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Campylobacter| Campylobacter Sebald and Veron 1963 (Approved Lists 1980) emend. Tanner et al. 1981| Campylobacter Sebald and Veron 1963 (Approved Lists 1980) emend. Vandamme et al. 1991| Campylobacter Sebald and Veron 1963 (Approved Lists 1980) emend. Vandamme et al. 2010
High colorectal cancer risk
Clostridioides difficile [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacillus difficilis" Hall and O'Toole 1935| "Peptoclostridium difficile" Yutin and Galperin 2013| AS 1.2184| ATCC 9689| Bacillus difficilis| BCRC 10642| CCRC 10642| CCRC:10642| CCUG 4938| CIP 104282| Clostridioides difficile| Clostridioides difficile (Hall and O'Toole 1935) Lawson et al. 2016| Clostridium difficile| Clostridium difficile (Hall and O'Toole 1935) Prevot 1938 (Approved Lists 1980)| Clostridium difficle| Clostridium sp. HMSC19D05| DSM 1296| DSMZ 1296| JCM 1296| LMG 15861| LMG:15861| NCIMB 10666| NCTC 11209| Peptoclostridium difficile
Colitis
Salmonella [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Salmonella| Salmonella Lignieres 1900
Pathogen
Vibrio [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Microspira" Schroeter 1886| "Pacinia" Trevisan 1885| Beneckea| Beneckea Campbell 1957| Listonella| Listonella MacDonell and Colwell 1986| Microspira| Pacinia| Vibrio| Vibrio Pacini 1854
Pathogen
Yersinia [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Yersinia| Yersinia van Loghem 1944
Helicobacter pylori [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 43504| ATCC 49396 [[Helicobacter nemestrinae Bronsdon et al. 1991]]| Campylobacter pylori| Campylobacter pylori corrig. Marshall et al. 1985 emend. Fox et al. 1988| Campylobacter pylori corrig. Marshall et al. 1985 emend. Fox et al. 1989| Campylobacter pylori Marshall et al. 1985 corrig. Marshall and Goodwin 1987| Campylobacter pylori subsp. pylori| Campylobacter pylori subsp. pylori Marshall et al. 1985| Campylobacter pyloridis| Campylobacter pyloridis Marshall et al.1985| CCUG 15815 B| CCUG 17874| CCUG 39500| CIP 103995| DSM 21031| DSM 4867| DSM 7492 [[Helicobacter nemestrinae Bronsdon et al. 1991]]| Helicobacter nemestrinae| Helicobacter nemestrinae Bronsdon et al. 1991| Helicobacter pylori| Helicobacter pylori (Marshall et al. 1985) Goodwin et al. 1989| JCM 12093| LMG 18041| LMG 19449| LMG:18041| LMG:19449| NCTC 11637| NCTC 12491 [[Helicobacter nemestrinae Bronsdon et al. 1991]]| strain Royal Perth Hospital 13487| strain T81213-NTB [[Helicobacter nemestrinae Bronsdon et al. 1991]]
Gastric ulcers
Bacteroides fragilis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacteroides inaequalis" Eggerth and Gagnon 1933| "Bacteroides incommunis" Eggerth and Gagnon 1933| "Bacteroides uncatus" Eggerth and Gagnon 1933| "Fusiformis fragilis" Topley and Wilson 1929| "Pseudobacterium fragilis" Krasil'nikov 1949| "Pseudobacterium inaequalis" (Eggerth and Gagnon 1933) Krasil'nikov 1949| "Pseudobacterium incommunis" (Eggerth and Gagnon 1933) Krasil'nikov 1949| "Pseudobacterium uncatum" (Eggerth and Gagnon 1933) Krasil'nikov 1949| "Ristella fragilis" Prevot 1938| "Ristella incommunis" (Eggerth and Gagnon 1933) Prevot 1938| "Ristella uncata" (Eggerth and Gagnon 1933) Prevot 1938| "Sphaerophorus inaequalis" (Eggerth and Gagnon 1933) Prevot 1938| "Sphaerophorus intermedius" Bergan and Hovig 1968| ATCC 25285| Bacillus fragilis| Bacillus fragilis Veillon and Zuber 1898| Bacteroides fragilis| Bacteroides fragilis (Veillon and Zuber 1898) Castellani and Chalmers 1919 (Approved Lists 1980) emend. Hahnke et al. 2016| Bacteroides inaequalis| Bacteroides incommunis| Bacteroides sp. 2_1_16| Bacteroides sp. 2_1_56FAA| Bacteroides uncatus| CCUG 4856| CIP 77.16| DSM 2151| Fusiformis fragilis| JCM 11019| LMG 10263| LMG:10263| NCTC 9343| Pseudobacterium fragilis| Pseudobacterium inaequalis| Pseudobacterium incommunis| Pseudobacterium uncatum| Ristella fragilis| Ristella incommunis| Ristella uncata| Sphaerophorus inaequalis| Sphaerophorus intermedius
H02076 Bacteroides infection
Bifidobacterium [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bifidibacterium" Prevot 1938| "Tissieria" Pribram 1929| Bifidibacterium| Bifidobacterium| Bifidobacterium Orla-Jensen 1924| Tissieria
Bifidobacterium adolescentis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| AS 1.2190| ATCC 15703| BCRC 14606| Bifidobacterium adolescentis| Bifidobacterium adolescentis Reuter 1963| Bifidobacterium stercoris| Bifidobacterium stercoris Kim et al. 2010| CCRC 14606| CCRC:14606| CCUG 17359| CCUG 18363| CIP 64.59| DSM 20083| DSM 24849 [[Bifidobacterium stercoris]]| JCM 1275| JCM 15918 [[Bifidobacterium stercoris]]| KCTC 5756 [[Bifidobacterium stercoris]]| LMG 10502| LMG:10502| NCAIM B.01822| NCTC 11814| strain Eg1 [[Bifidobacterium stercoris]]
Bifidobacterium bifidum [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Actinobacterium bifidum" (Tissier 1900) Puntoni 1937| "Actinomyces bifidus" (Tissier 1900) Nannizzi 1934| "Actinomyces parabifidus" (Weiss and Rettger 1938) Pine and Georg 1965| "Bacillus bifidus communis" Tissier 1900| "Bacillus bifidus" Tissier 1900| "Bacterium bifidum" (Tissier 1900) Lehmann and Neumann 1927| "Bacteroides bifidus" (Tissier 1900) Castellani and Chalmers 1919| "Bifidibacterium bifidum" (Tissier 1900) Prevot 1938| "Cohnistreptothrix bifidus" (Tissier 1900) Negroni and Fischer 1944| "Lactobacillus bifidus type II" Weiss and Rettger 1938| "Lactobacillus parabifidus" Weiss and Rettger 1938| "Nocardia bifida" (Tissier 1900) Vuillemin 1931| "Tissieria bifida" (Tissier 1900) Pribram 1929| Actinobacterium bifidum| Actinomyces bifidus| Actinomyces parabifidus| AS 1.2212| ATCC 29521| Bacillus bifidus| Bacillus bifidus communis| Bacterium bifidum| Bacteroides bifidus| BCRC 14615| Bifidibacterium bifidum| Bifidobacterium bifidum| Bifidobacterium bifidum (Tissier 1900) Orla-Jensen 1924| CCRC 14615| CCRC:14615| CCUG 18364| CCUG 45217| CIP 56.7| Cohnistreptothrix bifidus| DSM 20456| HAMBI 1380| IFO 14252| JCM 1255| KCTC 3202| Lactobacillus bifidus type II| Lactobacillus parabifidus| LMG 11041| LMG 8810| LMG:11041| LMG:8810| NBRC 100015| NBRC 14252| NCFB 2715| NCIMB 702715| NCTC 13001| Nocardia bifida| strain Ti| Tissieria bifida
Bifidobacterium breve [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bifidobacterium parvulorum" Reuter 1963| AS 1.2213| ATCC 15700| BCRC 11846| Bifidobacterium breve| Bifidobacterium breve Reuter 1963| Bifidobacterium parvulorum| CCRC 11846| CCRC:11846| CCUG 18365| CCUG 30511 A| CIP 64.69| DSM 20213| HAMBI 558| JCM 1192| LMG 11042| LMG:11042| NCAIM B.01820| NCFB 2257| NCIMB 702257| NCTC 11815
Bifidobacterium longum [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| AS 1.2186| ATCC 15707| BCRC 11847| Bifidobacterium longum| Bifidobacterium longum Reuter 1963| Bifidobacterium sp. 12_1_47BFAA| CCRC 11847| CCRC:11847| CCUG 28903| CIP 64.62| DSM 20219| HAMBI 554| JCM 1217| KCTC 3128| LMG 10497| LMG 13197| LMG:10497| LMG:13197| NCAIM B.01819| NCFB 2259| NCIMB 702259| NCTC 11818
Enterococcus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Enterococcus" Thiercelin and Jouhaud 1903| Enterococcus| Enterococcus (ex Thiercelin and Jouhaud 1903) Schleifer and Kilpper-Balz 1984
Escherichia [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Escherichia| Escherichia Castellani and Chalmers 1919
Lactobacillus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Lactobacillus| Lactobacillus Beijerinck 1901 (Approved Lists 1980) emend. Cai et al. 2012| Lactobacillus Beijerinck 1901 (Approved Lists 1980) emend. Haakensen et al. 2009| Paralactobacillus| Paralactobacillus Leisner et al. 2000
Pathogen
Lacticaseibacillus casei [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacillus a" von Freudenreich 1890| "Bacillus a" von Freudenreich 1891| "Bacillus casei a" von Freudenreich and Thoni 1904| "Bacterium casei a" Orla-Jensen 1916| "Caseobacterium vulgare" Orla-Jensen 1916| "Lactobacillus casei" Bergey et al. 1923| "Lactobacterium casei" (Orla-Jensen 1916) Krasil'nikov 1949| "Streptobacterium casei" Orla-Jensen 1919| ATCC 393| Bacillus a| Bacillus casei a| Bacterium casei a| BCRC 10697| Caseobacterium vulgare| CCRC 10697| CCRC:10697| CECT 475| CIP 103137| DSM 20011| IAM 12473| IFO 15883| JCM 1134| KCTC 3109| Lactobacillus casei| Lactobacillus casei (Orla-Jensen 1916) Hansen and Lessel 1971 (Approved Lists 1980) emend. Dicks et al. 1996| Lactobacillus casei subsp. casei| Lactobacillus sp. NCIM 2363| Lactobacillus sp. NCIM 2732| Lactobacillus sp. T2| Lactobacillus sp. T20| Lactobacterium casei| LMG 6904| LMG:6904| NBRC 15883| NCDO 161| NCIMB 11970| NRRL B-1922| strain Hucker03| strain Orla-Jensen 7| strain OrlandL-323| strain Tittsler303| Streptobacterium casei
Lactobacillus delbrueckii [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacillus acidificans longissimus" Lafar 1896| "Bacillus Delbrucki" (sic) Leichmann 1896| "Bacterium delbrucki" (sic) (Leichmann 1896) Migula 1900| "Lactobacillus delbrucki" (sic) (Leichmann 1896) Beijerinck 1901| "Lactobacterium delbrucki" (sic) (Leichmann 1896) van Steenberge 1920| "Plocamobacterium delbrucki" (sic) (Leichmann 1896) Pribram 1933| "Thermobacterium cereale" Orla-Jensen 1919| "Ulvina delbrucki" (sic) (Leichmann 1896) Pribram 1933| ATCC 9649| Bacillus acidificans longissimus| Bacillus Delbrucki| Bacterium delbrucki| BCRC 12195| CCUG 34222| CIP 57.8| DSM 20074| IFO 3202| JCM 1012| Lactobacillus delbrucki| Lactobacillus delbrueckii| Lactobacillus delbrueckii (Leichmann 1896) Beijerinck 1901| Lactobacillus delbrueckii Beijerinck 1901| Lactobacillus sp. NCIM 2025| Lactobacillus sp. NCIM 2365| Lactobacterium delbrucki| LMG 6412| LMG:6412| NBRC 3202| NCDO 213| NCIMB 8130| NRRL B-763| Plocamobacterium delbrucki| Thermobacterium cereale| Ulvina delbrucki| VKM B-1596
Lactiplantibacillus plantarum [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Lactobacillus arabinosus" Fred et al.| "Lactobacillus plantari" (sic) (Orla-Jensen 1919) Bergey et al. 1923 (Approved Lists 1980)| "Lactobacterium plantarum" (Orla-Jensen 1919) Krasil'nikov 1949| "Streptobacterium plantarum" Orla-Jensen 1919| ATCC 14917| ATCC BAA-171 [[Lactobacillus arizonensis]]| B-14768 [[Lactobacillus arizonensis]]| CCUG 30503| CCUG 45396 [[Lactobacillus arizonensis]]| CIP 103151| CIP 106786 [[Lactobacillus arizonensis]]| DSM 13273 [[Lactobacillus arizonensis]]| DSM 20174| IFO 15891| JCM 11125 [[Lactobacillus arizonensis]]| JCM 1149| Lactobacillus arabinosus| Lactobacillus arizonae| Lactobacillus arizonensis| Lactobacillus arizonensis Swezey et al. 2000| Lactobacillus plantari| Lactobacillus plantarum| Lactobacillus plantarum (Orla-Jensen 1919) Bergey et al. 1923| Lactobacillus sp. Lact08| Lactobacillus sp. Lact09| Lactobacillus sp. Lact14| Lactobacillus sp. M6DWS| Lactobacillus sp. S2| Lactobacillus sp. S8| Lactobacillus sp. Z12| Lactobacterium plantarum| LMG 6907| LMG:6907| NBRC 15891| NCIMB 11974| NRRL B-14768 [[Lactobacillus arizonensis]]| NRRL B-4496| Streptobacterium plantarum| Weissella sp. Lact07
Lacticaseibacillus rhamnosus [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 7469| CCUG 21452| CIP A157| DSM 20021| IFO 3425| JCM 1136| Lactobacillus casei rhamnosus| Lactobacillus casei subsp. rhamnosus| Lactobacillus casei subsp. rhamnosus Hansen 1968 (Approved Lists 1980)| Lactobacillus rhamnosus| Lactobacillus rhamnosus (Hansen 1968) Collins et al. 1989| Lactobacillus sp. NCIM 2587| Lactobacillus sp. W6| Lactobacillus sp. X9| LMG 6400| LMG:6400| NBRC 3425| NCAIM B.01147| NCCB 46033| NCDO 243| NCIMB 6375| NCTC 12953| NRRL B-442| VKM B-574
Ligilactobacillus salivarius [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 11741| ATCC 11742| CCUG 31453| CCUG 39464| CIP 103140| CIP 103155| DSM 20554| DSM 20555| HAMBI 78| HAMBI 87| JCM 1150| JCM 1231| Lactobacillus salivarius| Lactobacillus salivarius Rogosa et al. 1953 (Approved Lists 1980) emend. Li et al. 2006| Lactobacillus salivarius subsp. salicinius| Lactobacillus salivarius subsp. salicinius Rogosa et al. 1953| Lactobacillus salivarius subsp. salivarius| Lactobacillus salivarius subsp. salivarius Rogosa et al. 1953| LMG 9476| LMG 9477| LMG:9476| LMG:9477| NBRC 102160| NRRL B-1949| NRRL B-1950
Clostridium [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Anaerobacter| Anaerobacter Duda et al. 1996| Clostridium| Clostridium Prazmowski 1880 (Approved Lists 1980) emend. Lawson and Rainey 2016
Pathogen
Oxalobacter formigenes [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 35274| CIP 106513| Oxalobacter formigenes| Oxalobacter formigenes Allison et al. 1985| strain OxB
Akkermansia muciniphila [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Akkermansia muciniphila| Akkermansia muciniphila Derrien et al. 2004 emend. Hahnke et al. 2016| Akkermansia sp. YL44| ATCC BAA-835| CIP 107961| strain Muc
High Levels linked to long-lived individuals
Faecalibacterium prausnitzii [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacillus mucosus anaerobius" Prausnitz 1922| "Bacteroides praussnitzii" (sic) Hauduroy et al. 1937| ATCC 27768| Bacillus mucosus anaerobius| Bacteroides praussnitzii| butyrate-producing bacterium A2-165| Faecalibacterium prausnitzii| Faecalibacterium prausnitzii (Hauduroy et al. 1937) Duncan et al. 2002| Fusobacterium prausnitzii| Fusobacterium prausnitzii (Hauduroy et al. 1937) Moore and Holdeman 1970 (Approved Lists 1980)| NCIMB 13872
Bacteroidota [phylum]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Bacteroidaeota| Bacteroidaeota Oren et al. 2015| Bacteroides-Cytophaga-Flexibacter group| Bacteroidetes| Bacteroidetes Krieg et al. 2012| Bacteroidota| BCF group| CFB group| CFB group bacteria| Cytophaga-Flexibacter-Bacteroides phylum
Over 70%ile, prone to being fat
Bacillota [phylum]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Bacillaeota| Bacillaeota Oren et al. 2015| Bacillota| Bacillus/Clostridium group| clostridial firmicutes| Clostridium group firmicutes| Firmacutes| Firmicutes| Firmicutes corrig. Gibbons and Murray 1978| Low G+C firmicutes| low G+C Gram-positive bacteria| low GC Gram+
Pseudomonadota [phylum]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Alphaproteobacteraeota| Alphaproteobacteraeota Oren et al. 2015| Alphaproteobacteriota| Proteobacteria| Proteobacteria [class] Stackebrandt et al. 1988| Proteobacteria Garrity et al. 2005| purple bacteria| purple bacteria and relatives| purple non-sulfur bacteria| purple photosynthetic bacteria| purple photosynthetic bacteria and relatives
Actinomycetota [phylum]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Actinobacteraeota| Actinobacteraeota Oren et al. 2015| Actinobacteria| Actinobacteriota
Euryarchaeota [phylum]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Euryarchaeota" Woese et al. 1990| Euryarchaeota| Euryarchaeota Garrity and Holt 2002| euryarchaeotes| Methanobacteraeota| Methanobacteraeota Oren et al. 2015| Methanobacteriota
Verrucomicrobiota [phylum]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Verrucomicrobaeota| Verrucomicrobaeota Oren et al. 2015| Verrucomicrobia| Verrucomicrobia (Hedlund et al. 1997) Yoon et al. 2010| Verrucomicrobia Hedlund 2012| Verrucomicrobiota
Enterococcus casseliflavus [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Streptococcus casseliflavus" Vaughan et al. 1979| ATCC 25788| ATCC 49996 [[Enterococcus flavescens Pompei et al. 1992]]| CCM 4239 [[Enterococcus flavescens Pompei et al. 1992]]| CCUG 18657| CCUG 30567 [[Enterococcus flavescens Pompei et al. 1992]]| CECT 4481 [[Enterococcus flavescens Pompei et al. 1992]]| CIP 103018| CIP 103525 [[Enterococcus flavescens Pompei et al. 1992]]| DSM 20680| DSM 7370 [[Enterococcus flavescens Pompei et al. 1992]]| Enterococcus casseliflavus| Enterococcus casseliflavus (ex Vaughan et al. 1979) Collins et al. 1984| Enterococcus flavescens| Enterococcus flavescens Pompei et al. 1992| HAMBI 2233 [[Enterococcus flavescens Pompei et al. 1992]]| JCM 8723| LMG 10745| LMG 13518 [[Enterococcus flavescens Pompei et al. 1992]]| LMG:10745| LMG:13518 [[Enterococcus flavescens Pompei et al. 1992]]| MUTK 20| NBRC 100478| NBRC 100679 [[Enterococcus flavescens Pompei et al. 1992]]| NCDO 2372| NCIMB 11449| NCTC 12361| NRRL B-3502| Streptococcus casseliflavus| Streptococcus faecium subsp. casseliflavus| Streptococcus faecium var. casseliflavus| Streptococcus flavescens