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National Library of Medicine Citations for Allergies

The following have had published studies. These are report on the averages of a group of patients; they do not apply to all patients and are not necessary predictive.

Some studies were done on people with specific conditions, ethnic origin or diet style (i.e. traditional Chinese Diet versus Western Diet), which may be why some shifts are in opposite directions.

See this post about overlapping bacteria/taxa and possible progression of conditions.

AI Engines For more Details: Perplexity  Kagi Labs  You 

Note these are associations and not causation. Items being high or low may be part of the immune response.

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⬆️ indicate a study reporting it is high. ⬇️ indicates a study reporting it is low. Names are indented according to taxonomy rank. Hover over to see rank.

Pasteurellaceae   ⬆️    
Pseudomonas aeruginosa   ⬆️    
Enterobacteriaceae   ⬆️ ⬆️ ⬆️   ⬇️ ⬇️  
Escherichia   ⬆️ ⬆️ ⬆️    
Shigella   ⬆️ ⬆️    
Escherichia coli   ⬆️ ⬆️    
Sphingomonadaceae   ⬆️    
Methylobacteriaceae   ⬆️    
Enhydrobacter   ⬆️    
Methylobacterium   ⬆️    
Comamonadaceae   ⬆️    
Burkholderiaceae   ⬆️    
Akkermansia   ⬆️   ⬇️  
Akkermansia muciniphila     ⬇️  
Bacteroidota   ⬆️    
Bacteroidia   ⬆️    
Bacteroidales   ⬆️    
Porphyromonadaceae     ⬇️  
Prevotellaceae     ⬇️  
Bacteroidaceae   ⬆️ ⬆️   ⬇️  
Muribaculaceae     ⬇️  
Barnesiellaceae     ⬇️  
Alistipes     ⬇️  
Prevotella   ⬆️   ⬇️  
Segatella copri     ⬇️  
Parabacteroides   ⬆️    
Bacteroides     ⬇️  
Bacteroides fragilis   ⬆️ ⬆️    
Actinomycetota   ⬆️    
Clostridia   ⬆️   ⬇️ ⬇️  
Oscillospiraceae     ⬇️  
Clostridiaceae   ⬆️   ⬇️  
Eubacterium   ⬆️    
Eubacterium coprostanoligenes     ⬇️  
Faecalibacterium   ⬆️   ⬇️  
Oscillibacter     ⬇️  
Ruminococcus   ⬆️   ⬇️  
Ruminiclostridium   ⬆️    
Subdoligranulum     ⬇️  
Ruminococcus bromii     ⬇️  
Faecalibacterium prausnitzii     ⬇️  
Oscillibacter valericigenes   ⬆️    
Anaeromassilibacillus   ⬆️    
Clostridium   ⬆️ ⬆️   ⬇️ ⬇️ ⬇️  
Clostridium paraputrificum   ⬆️    
Clostridium neonatale   ⬆️    
Romboutsia     ⬇️  
Clostridioides difficile   ⬆️ ⬆️    
Lachnospiraceae   ⬆️   ⬇️ ⬇️ ⬇️  
Lachnoclostridium   ⬆️    
Blautia   ⬆️    
Anaerotaenia     ⬇️  
Dorea formicigenerans   ⬆️    
Coprococcus catus   ⬆️    
Blautia obeum   ⬆️    
Robinsoniella peoriensis   ⬆️    
Erysipelotrichaceae   ⬆️ ⬆️    
Turicibacter   ⬆️   ⬇️  
Acidaminococcaceae     ⬇️  
Phascolarctobacterium faecium     ⬇️  
Veillonella   ⬆️ ⬆️     🧪 263244035 %ile
Dialister     ⬇️  
Megamonas     ⬇️  
Staphylococcus   ⬆️    
Staphylococcus aureus   ⬆️   ⬇️  
Lactobacillaceae     ⬇️ ⬇️  
Streptococcus mutans   ⬆️    
Streptococcus lutetiensis   ⬆️    
Lactobacillus   ⬆️   ⬇️ ⬇️ ⬇️ ⬇️  
Lactobacillus gasseri   ⬆️    
Limosilactobacillus reuteri   ⬆️    
Enterococcus     ⬇️ ⬇️  
Actinomycetes   ⬆️    
Bifidobacteriaceae     ⬇️  
Bifidobacterium   ⬆️   ⬇️ ⬇️ ⬇️  
Bifidobacterium adolescentis     ⬇️ ⬇️  
Bifidobacterium bifidum   ⬆️    
Bifidobacterium catenulatum   ⬆️    
Bifidobacterium longum   ⬆️    
Scardovia wiggsiae   ⬆️    
Propionibacterium   ⬆️    
Adlercreutzia   ⬆️    
Eggerthella   ⬆️    
Collinsella aerofaciens   ⬆️    
Desulfovibrionaceae     ⬇️  
Fusobacterium   ⬆️   ⬇️  
Deltaproteobacteria     ⬇️  
Methanobrevibacter   ⬆️    
Aspergillus fumigatus   ⬆️    

To see matches for your sample with the literature, raise display level.

Based on Clinical Studies in US National Libary of Medicine

For matching a percentile below 20% can be deemed to be low, and above 80% as high. These are arbitrary thresholds. In some cases, like for d-acidosis, it is the total from all bacteria that is important.

Reference Data
Tax Rank Tax Name Shift Percentile Distribution Citation Link
class Actinomycetes (NCBI:1760 ) High n/a Distribution    📚 PubMed
class Bacteroidia (NCBI:200643 ) High n/a Distribution    📚 PubMed
class Clostridia (NCBI:186801 ) High n/a Distribution    📚 PubMed
class Clostridia (NCBI:186801 ) Low n/a Distribution    📚 PubMed
class Deltaproteobacteria (NCBI:28221 ) Low n/a Distribution    📚 PubMed
family Acidaminococcaceae (NCBI:909930 ) Low n/a Distribution    📚 PubMed
family Bacteroidaceae (NCBI:815 ) High n/a Distribution    📚 PubMed
family Bacteroidaceae (NCBI:815 ) Low n/a Distribution    📚 PubMed
family Barnesiellaceae (NCBI:2005519 ) Low n/a Distribution    📚 PubMed
family Bifidobacteriaceae (NCBI:31953 ) Low n/a Distribution    📚 PubMed
family Burkholderiaceae (NCBI:119060 ) High n/a Distribution    📚 PubMed
family Clostridiaceae (NCBI:31979 ) High n/a Distribution    📚 PubMed
family Clostridiaceae (NCBI:31979 ) Low n/a Distribution    📚 PubMed
family Comamonadaceae (NCBI:80864 ) High n/a Distribution    📚 PubMed
family Desulfovibrionaceae (NCBI:194924 ) Low n/a Distribution    📚 PubMed
family Enterobacteriaceae (NCBI:543 ) High n/a Distribution    📚 PubMed
family Enterobacteriaceae (NCBI:543 ) Low n/a Distribution    📚 PubMed
family Erysipelotrichaceae (NCBI:128827 ) High n/a Distribution    📚 PubMed
family Lachnospiraceae (NCBI:186803 ) High n/a Distribution    📚 PubMed
family Lachnospiraceae (NCBI:186803 ) Low n/a Distribution    📚 PubMed
family Lactobacillaceae (NCBI:33958 ) Low n/a Distribution    📚 PubMed
family Methylobacteriaceae (NCBI:119045 ) High n/a Distribution    📚 PubMed
family Muribaculaceae (NCBI:2005473 ) Low n/a Distribution    📚 PubMed
family Oscillospiraceae (NCBI:216572 ) Low n/a Distribution    📚 PubMed
family Pasteurellaceae (NCBI:712 ) High n/a Distribution    📚 PubMed
family Porphyromonadaceae (NCBI:171551 ) Low n/a Distribution    📚 PubMed
family Prevotellaceae (NCBI:171552 ) Low n/a Distribution    📚 PubMed
family Ruminococcaceae (NCBI:541000 ) High n/a Distribution    📚 PubMed
family Ruminococcaceae (NCBI:541000 ) Low n/a Distribution    📚 PubMed
family Sphingomonadaceae (NCBI:41297 ) High n/a Distribution    📚 PubMed
genus Adlercreutzia (NCBI:447020 ) High n/a Distribution    📚 PubMed
genus Akkermansia (NCBI:239934 ) High n/a Distribution    📚 PubMed
genus Akkermansia (NCBI:239934 ) Low n/a Distribution    📚 PubMed
genus Alistipes (NCBI:239759 ) Low n/a Distribution    📚 PubMed
genus Anaeromassilibacillus (NCBI:1924093 ) High n/a Distribution    📚 PubMed
genus Anaerotaenia (NCBI:1843206 ) Low n/a Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) Low n/a Distribution    📚 PubMed
genus Bifidobacterium (NCBI:1678 ) High n/a Distribution    📚 PubMed
genus Bifidobacterium (NCBI:1678 ) Low n/a Distribution    📚 PubMed
genus Blautia (NCBI:572511 ) High n/a Distribution    📚 PubMed
genus Clostridium (NCBI:1485 ) High n/a Distribution    📚 PubMed
genus Clostridium (NCBI:1485 ) Low n/a Distribution    📚 PubMed
genus Dialister (NCBI:39948 ) Low n/a Distribution    📚 PubMed
genus Eggerthella (NCBI:84111 ) High n/a Distribution    📚 PubMed
genus Enhydrobacter (NCBI:212791 ) High n/a Distribution    📚 PubMed
genus Enterococcus (NCBI:1350 ) Low n/a Distribution    📚 PubMed
genus Erysipelatoclostridium (NCBI:1505663 ) High n/a Distribution    📚 PubMed
genus Escherichia (NCBI:561 ) High n/a Distribution    📚 PubMed
genus Eubacterium (NCBI:1730 ) High n/a Distribution    📚 PubMed
genus Faecalibacterium (NCBI:216851 ) High n/a Distribution    📚 PubMed
genus Faecalibacterium (NCBI:216851 ) Low n/a Distribution    📚 PubMed
genus Fusobacterium (NCBI:848 ) High n/a Distribution    📚 PubMed
genus Fusobacterium (NCBI:848 ) Low n/a Distribution    📚 PubMed
genus Hungateiclostridium (NCBI:2304692 ) Low n/a Distribution    📚 PubMed
genus Lachnoclostridium (NCBI:1506553 ) High n/a Distribution    📚 PubMed
genus Lactobacillus (NCBI:1578 ) High n/a Distribution    📚 PubMed
genus Lactobacillus (NCBI:1578 ) Low n/a Distribution    📚 PubMed
genus Megamonas (NCBI:158846 ) Low n/a Distribution    📚 PubMed
genus Methanobrevibacter (NCBI:2172 ) High n/a Distribution    📚 PubMed
genus Methylobacterium (NCBI:407 ) High n/a Distribution    📚 PubMed
genus Oscillibacter (NCBI:459786 ) Low n/a Distribution    📚 PubMed
genus Parabacteroides (NCBI:375288 ) High n/a Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) High n/a Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) Low n/a Distribution    📚 PubMed
genus Propionibacterium (NCBI:1743 ) High n/a Distribution    📚 PubMed
genus Romboutsia (NCBI:1501226 ) Low n/a Distribution    📚 PubMed
genus Ruminiclostridium (NCBI:1508657 ) High n/a Distribution    📚 PubMed
genus Ruminococcus (NCBI:1263 ) High n/a Distribution    📚 PubMed
genus Ruminococcus (NCBI:1263 ) Low n/a Distribution    📚 PubMed
genus Shigella (NCBI:620 ) High n/a Distribution    📚 PubMed
genus Staphylococcus (NCBI:1279 ) High n/a Distribution    📚 PubMed
genus Subdoligranulum (NCBI:292632 ) Low n/a Distribution    📚 PubMed
genus Turicibacter (NCBI:191303 ) High n/a Distribution    📚 PubMed
genus Turicibacter (NCBI:191303 ) Low n/a Distribution    📚 PubMed
genus Veillonella (NCBI:29465 ) High n/a Distribution    📚 PubMed
order Bacteroidales (NCBI:171549 ) High n/a Distribution    📚 PubMed
phylum Actinomycetota (NCBI:201174 ) High n/a Distribution    📚 PubMed
phylum Bacteroidota (NCBI:976 ) High n/a Distribution    📚 PubMed
species Akkermansia muciniphila (NCBI:239935 ) Low n/a Distribution    📚 PubMed
species Aspergillus fumigatus (NCBI:746128 ) High n/a Distribution    📚 PubMed
species Bacteroides fragilis (NCBI:817 ) High n/a Distribution    📚 PubMed
species Bifidobacterium adolescentis (NCBI:1680 ) Low n/a Distribution    📚 PubMed
species Bifidobacterium bifidum (NCBI:1681 ) High n/a Distribution    📚 PubMed
species Bifidobacterium catenulatum (NCBI:1686 ) High n/a Distribution    📚 PubMed
species Bifidobacterium longum (NCBI:216816 ) High n/a Distribution    📚 PubMed
species Blautia obeum (NCBI:40520 ) High n/a Distribution    📚 PubMed
species Clostridioides difficile (NCBI:1496 ) High n/a Distribution    📚 PubMed
species Clostridium neonatale (NCBI:137838 ) High n/a Distribution    📚 PubMed
species Clostridium paraputrificum (NCBI:29363 ) High n/a Distribution    📚 PubMed
species Collinsella aerofaciens (NCBI:74426 ) High n/a Distribution    📚 PubMed
species Coprococcus catus (NCBI:116085 ) High n/a Distribution    📚 PubMed
species Dorea formicigenerans (NCBI:39486 ) High n/a Distribution    📚 PubMed
species Escherichia coli (NCBI:562 ) High n/a Distribution    📚 PubMed
species Eubacterium coprostanoligenes (NCBI:290054 ) Low n/a Distribution    📚 PubMed
species Faecalibacterium prausnitzii (NCBI:853 ) Low n/a Distribution    📚 PubMed
species Lactobacillus gasseri (NCBI:1596 ) High n/a Distribution    📚 PubMed
species Limosilactobacillus reuteri (NCBI:1598 ) High n/a Distribution    📚 PubMed
species Oscillibacter valericigenes (NCBI:351091 ) High n/a Distribution    📚 PubMed
species Phascolarctobacterium faecium (NCBI:33025 ) Low n/a Distribution    📚 PubMed
species Pseudomonas aeruginosa (NCBI:287 ) High n/a Distribution    📚 PubMed
species Robinsoniella peoriensis (NCBI:180332 ) High n/a Distribution    📚 PubMed
species Ruminococcus bromii (NCBI:40518 ) Low n/a Distribution    📚 PubMed
species Scardovia wiggsiae (NCBI:230143 ) High n/a Distribution    📚 PubMed
species Segatella copri (NCBI:165179 ) Low n/a Distribution    📚 PubMed
species Staphylococcus aureus (NCBI:1280 ) High n/a Distribution    📚 PubMed
species Staphylococcus aureus (NCBI:1280 ) Low n/a Distribution    📚 PubMed
species Streptococcus lutetiensis (NCBI:150055 ) High n/a Distribution    📚 PubMed
species Streptococcus mutans (NCBI:1309 ) High n/a Distribution    📚 PubMed

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