We use a subjective scale and leave the reader to translate the lab reports appropriately. If the bacteria are identified as bad/pathogenic and you are low, then do not enter them.
Bacteria Reported Level Also Known as Comment
Akkermansia [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Akkermansia| Akkermansia Derrien et al. 2004
Faecalibacterium [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Faecalibacterium| Faecalibacterium Duncan et al. 2002
Roseburia [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Roseburia| Roseburia Stanton and Savage 1983| Roseburya| Roseburyella
Eubacterium [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Eubacterium| Eubacterium Prevot 1938 (Approved Lists 1980) emend. Cato et al. 1983
Lactobacillaceae [family]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Lactobacillaceae| Lactobacillaceae Winslow et al. 1917
Bacillus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Bacillus
Pathogen
Enterococcus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Enterococcus" Thiercelin and Jouhaud 1903| Enterococcus| Enterococcus (ex Thiercelin and Jouhaud 1903) Schleifer and Kilpper-Balz 1984
Staphylococcus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Aurococcus" Winslow and Rogers 1906| Aurococcus| Staphylococcus| Staphylococcus Rosenbach 1884
Streptococcus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Streptococcus| Streptococcus Rosenbach 1884
Blautia [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Blautia| Blautia Liu et al. 2008 emend. Durand et al. 2017
Veillonella [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Veillonella| Veillonella Prevot 1933 (Approved Lists 1980) emend. Aujoulat et al. 2014| Veillonella Prevot 1933 (Approved Lists 1980) emend. Mays et al. 1982
Ruminococcus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Ruminococcus| Ruminococcus Sijpesteijn 1948
Bacteroides [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Ristella" Prevot 1938| Bacteroides| Bacteroides Castellani and Chalmers 1919 (Approved Lists 1980) emend. Shah and Collins 1989| Capsularis| Capsularis Prevot 1938 (Approved Lists 1980)| Ristella
Prevotella [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Prevotella| Prevotella Shah and Collins 1990 emend. Sakamoto and Ohkuma 2012| Prevotella Shah and Collins 1990 emend. Willems and Collins 1995| Xylanibacter| Xylanibacter Ueki et al. 2006
Alistipes [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Alistipes| Alistipes Rautio et al. 2003
High Levels linked to long-lived individuals
Bifidobacterium [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bifidibacterium" Prevot 1938| "Tissieria" Pribram 1929| Bifidibacterium| Bifidobacterium| Bifidobacterium Orla-Jensen 1924| Tissieria
Collinsella [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Collinsella| Collinsella Kageyama et al. 1999 emend. Kageyama and Benno 2000
proinflammatory
Propionibacterium [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Arachnia| Arachnia Pine and Georg 1969| Propionibacterium| Propionibacterium Orla-Jensen 1909 (Approved Lists 1980) emend. Charfreitag et al. 1988| Propionibacterium Orla-Jensen 1909 (Approved Lists 1980) emend. Scholz and Kilian 2016| Propionicibacterium
Clostridium [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Anaerobacter| Anaerobacter Duda et al. 1996| Clostridium| Clostridium Prazmowski 1880 (Approved Lists 1980) emend. Lawson and Rainey 2016
Pathogen
Clostridioides [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Clostridioides| Clostridioides Lawson et al. 2016
Enterobacterales [order]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Enterobacterales| Enterobacterales Adeolu et al. 2016| enterobacteria| Enterobacteriaceae and related endosymbionts| Enterobacteriaceae group| Enterobacteriales| gamma-3 proteobacteria
Escherichia [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Escherichia| Escherichia Castellani and Chalmers 1919
Shigella [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Shigella| Shigella Castellani and Chalmers 1919
Pathogen
Salmonella [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Salmonella| Salmonella Lignieres 1900
Pathogen
Klebsiella [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Donovania" Anderson et al. 1944| "Hyalococcus" Schroeter 1886| Calymmatobacterium| Calymmatobacterium Aragao and Vianna 1913| Donovania| Hyalococcus| Klebsiella| Klebsiella Trevisan 1885 (Approved Lists 1980) emend. Carter et al. 1999| Klebsiella Trevisan 1885 (Approved Lists 1980) emend. Drancourt et al. 2001
Pathogen
Yersinia [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Yersinia| Yersinia van Loghem 1944
Oxalobacter [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Oxalobacter| Oxalobacter Allison et al. 1985
Pseudomonas [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Chlorobacterium" Guillebeau 1890, nom. rejic. Opin. 6 (not "Chlorobacterium" Lauterborn 1916)| "Liquidomonas" Orla-Jensen 1909| "Loefflerella" Holden 1935| Chryseomonas| Chryseomonas Holmes et al. 1986| Flavimonas| Liquidomonas| Loefflerella| Pseudomonas| Pseudomonas Migula 1894 emend. Yang et al. 2013| RNA similarity group I| Serpens| Serpens Hespell 1977
Campylobacter [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Campylobacter| Campylobacter Sebald and Veron 1963 (Approved Lists 1980) emend. Tanner et al. 1981| Campylobacter Sebald and Veron 1963 (Approved Lists 1980) emend. Vandamme et al. 1991| Campylobacter Sebald and Veron 1963 (Approved Lists 1980) emend. Vandamme et al. 2010
High colorectal cancer risk
Helicobacter [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Gastrospirillum| Helicobacter| Helicobacter Goodwin et al. 1989 emend. Vandamme et al. 1991
Fusobacterium [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Fusibacterium| Fusobacterium| Fusobacterium Knorr 1922
Periodontal disease, Lemierre syndrome, skin ulcers
Desulfovibrio [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Sporovibrio" Starkey 1938| Desulfomonas| Desulfomonas Moore et al. 1976| Desulfovibrio| Desulfovibrio Kluyver and van Niel 1936 (Approved Lists 1980) emend. Loubinoux et al. 2002| Sporovibrio
Desulfurivibrio [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Desulfurivibrio| Desulfurivibrio Sorokin et al. 2008
Methanobrevibacter [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Methanobrevibacter| Methanobrevibacter Balch and Wolfe 1981
Methanocella [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Methanofollis [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Methanosarcina [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Methanosarcina| Methanosarcina Kluyver and van Niel 1936 emend. Barker 1956 (Approved Lists 1980) emend. Ni et al. 1994| Methanosarcina Kluyver and van Niel 1936 emend. Barker 1956 (Approved Lists 1980), nom. cons., emend. Mah and Kuhn 1984
Methanosphaera [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Methanosphaera| Methanosphaera Miller and Wolin 1985
Thermococcus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Thermococcus| Thermococcus Zillig 1983
Desulfurococcus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Desulfurococcus| Desulfurococcus Zillig and Stetter 1983
Saccharomyces [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Pachytichospora| Saccharomyces
Zygosaccharomyces [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Alternaria [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Alternaria
Aspergillus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Aspergillus| Petromyces
Candida [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Fusarium [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Fusarium| Gibberella
Neurospora [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Penicillium [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Eupenicillium| Penicillium
Cryptococcus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Cryptococcus| Filobasidiella| mitosporic Filobasidiella
Malassezia [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Malassezia
Rhodotorula [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Trichosporon [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Blastocystis [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Blastocystis
Giardia [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Cryptosporidium [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Enterobius [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Bacillota [phylum]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Bacillaeota| Bacillaeota Oren et al. 2015| Bacillota| Bacillus/Clostridium group| clostridial firmicutes| Clostridium group firmicutes| Firmacutes| Firmicutes| Firmicutes corrig. Gibbons and Murray 1978| Low G+C firmicutes| low G+C Gram-positive bacteria| low GC Gram+
Bacteroidota [phylum]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Bacteroidaeota| Bacteroidaeota Oren et al. 2015| Bacteroides-Cytophaga-Flexibacter group| Bacteroidetes| Bacteroidetes Krieg et al. 2012| Bacteroidota| BCF group| CFB group| CFB group bacteria| Cytophaga-Flexibacter-Bacteroides phylum
Over 70%ile, prone to being fat
Actinomycetota [phylum]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Actinobacteraeota| Actinobacteraeota Oren et al. 2015| Actinobacteria| Actinobacteriota
Pseudomonadota [phylum]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Alphaproteobacteraeota| Alphaproteobacteraeota Oren et al. 2015| Alphaproteobacteriota| Proteobacteria| Proteobacteria [class] Stackebrandt et al. 1988| Proteobacteria Garrity et al. 2005| purple bacteria| purple bacteria and relatives| purple non-sulfur bacteria| purple photosynthetic bacteria| purple photosynthetic bacteria and relatives
Campylobacterota [phylum]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| e-proteobacteria| epsilon proteobacteria| epsilon subdivision| epsilon subgroup| Epsilonproteobacteria| Epsilonproteobacteria Garrity et al. 2006| Proteobacteria epsilon subdivision| Purple bacteria, epsilon subdivision
Fusobacteriota [phylum]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Fusobacteraeota| Fusobacteraeota Oren et al. 2015| Fusobacteria| Fusobacteria Garrity and Holt 2001| Fusobacteriota
Verrucomicrobiota [phylum]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Verrucomicrobaeota| Verrucomicrobaeota Oren et al. 2015| Verrucomicrobia| Verrucomicrobia (Hedlund et al. 1997) Yoon et al. 2010| Verrucomicrobia Hedlund 2012| Verrucomicrobiota
Thermodesulfobacteriota [phylum]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Thermodesulfobacteraeota| Thermodesulfobacteraeota Oren et al. 2015| Thermodesulfobacteria| Thermodesulfobacteria Garrity and Holt 2002| Thermodesulfobacteriota
Spirochaetota [phylum]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Spirochaetae| Spirochaetaeota| Spirochaetaeota Oren et al. 2015| Spirochaetes| Spirochaetes Garrity and Holt 2001| Spirochaetota
Agathobacter [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Agathobacter| Agathobacter Rosero et al. 2016
Anaerobutyricum [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Anaerobutyricum| Anaerobutyricum Shetty et al. 2018
Anaerostipes [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Anaerostipes| Anaerostipes Schwiertz et al. 2002 emend. Eeckhaut et al. 2010
Blautia wexlerae [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC BAA-1564| Blautia wexlerae| Blautia wexlerae Liu et al. 2008| DSM 19850| WAL 14507
Blautia obeum [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 29174| Blautia obeum| Blautia obeum (Moore et al. 1976) Lawson and Finegold 2015| DSM 25238| KCTC 15206| Ruminococcus obeum| Ruminococcus obeum Moore et al. 1976
Blautia producta [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Streptococcus productus" Prevot 1941| ATCC 27340| Blautia producta| Blautia producta (Prevot 1941) Liu et al. 2008| CCUG 10976| CCUG 9990| DSM 2950| JCM 1471| Peptostreptococcus productus| Peptostreptococcus productus (Prevot 1941) Smith 1957 (Approved Lists 1980)| Ruminococcus productus| Ruminococcus productus (Prevot 1941) Ezaki et al. 1994| Streptococcus productus
Butyrivibrio [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Butyrivibrio| Butyrivibrio Bryant and Small 1956
Catenibacterium [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Catenibacterium| Catenibacterium Kageyama and Benno 2000
Clostridioides difficile [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacillus difficilis" Hall and O'Toole 1935| "Peptoclostridium difficile" Yutin and Galperin 2013| AS 1.2184| ATCC 9689| Bacillus difficilis| BCRC 10642| CCRC 10642| CCRC:10642| CCUG 4938| CIP 104282| Clostridioides difficile| Clostridioides difficile (Hall and O'Toole 1935) Lawson et al. 2016| Clostridium difficile| Clostridium difficile (Hall and O'Toole 1935) Prevot 1938 (Approved Lists 1980)| Clostridium difficle| Clostridium sp. HMSC19D05| DSM 1296| DSMZ 1296| JCM 1296| LMG 15861| LMG:15861| NCIMB 10666| NCTC 11209| Peptoclostridium difficile
Colitis
Clostridium perfringens [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacillus perfringens" Veillon and Zuber 1898| "Bacterium welchii" Migula 1900| 'Clostridium plagarum'| ATCC 13124| Bacillus perfringens| Bacterium welchii| BCRC 10913| CCRC 10913| CCRC:10913| CCUG 1795| CIP 103409| Clostridium perfringens| Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937| Clostridium plagarum| Clostridium sp. NCIM 2677| DSM 756| JCM 1290| LMG 11264| LMG:11264| NCAIM B.01417| NCCB 89165| NCIMB 6125| NCTC 8237
Food poisoning, gas gangrene
Coprococcus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Coprococcus| Coprococcus Holdeman and Moore 1974
Dorea [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Dorea| Dorea Taras et al. 2002
Dysosmobacter [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Enterocloster [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Enterococcus faecalis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Enterococcus proteiformis" Thiercelin and Jouhaud 1903| "Enterocoque" Thiercelin 1902| "Micrococcus ovalis" Escherich 1886| "Micrococcus zymogenes" MacCallum and Hastings 1899| "Streptococcus glycerinaceus" Orla-Jensen 1919| "Streptococcus liquefaciens" Sternberg 1892| ATCC 19433| ATCC 19433-U| CCUG 19916| CIP 103015| DSM 20478| Enterococcus faecalis| Enterococcus faecalis (Andrewes and Horder 1906) Schleifer and Kilpper-Balz 1984| Enterococcus proteiformis| Enterococcus sp. 7L76| Enterococcus sp. KB1| Enterocoque| HAMBI 1711| JCM 5803| JCM 8726| LMG 7937| LMG:7937| Micrococcus ovalis| Micrococcus zymogenes| NBRC 100480| NBRC 100481| NCAIM B.01312| NCDO 581| NCIMB 775| NCTC 775| Streptococcus faecalis| Streptococcus faecalis Andrewes and Horder 1906 (Approved Lists 1980)| Streptococcus glycerinaceus| Streptococcus liquefaciens
Endocarditis, septicemia, urinary tract infections, meningitis
Enterococcus faecium [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 19434| CCUG 542| CFBP 4248| CIP 103014| DSM 20477| Enterococcus faecium| Enterococcus faecium (Orla-Jensen 1919) Schleifer and Kilpper-Balz 1984| HAMBI 1710| JCM 5804| JCM 8727| LMG 11423| LMG:11423| NBRC 100485| NBRC 100486| NCDO 942| NCIMB 11508| NCTC 7171| Streptococcus faecium| Streptococcus faecium Orla-Jensen 1919 (Approved Lists 1980)
Pathogen
Faecalibacillus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Faecalibacterium prausnitzii [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacillus mucosus anaerobius" Prausnitz 1922| "Bacteroides praussnitzii" (sic) Hauduroy et al. 1937| ATCC 27768| Bacillus mucosus anaerobius| Bacteroides praussnitzii| butyrate-producing bacterium A2-165| Faecalibacterium prausnitzii| Faecalibacterium prausnitzii (Hauduroy et al. 1937) Duncan et al. 2002| Fusobacterium prausnitzii| Fusobacterium prausnitzii (Hauduroy et al. 1937) Moore and Holdeman 1970 (Approved Lists 1980)| NCIMB 13872
Flavonifractor [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Flavonifractor| Flavonifractor Carlier et al. 2010
Hungatella [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Hungatella| Hungatella Kaur et al. 2014
Intestinimonas [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Intestinimonas| Intestinimonas Klaring et al. 2013
Lachnoclostridium [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Lachnoclostridium" Yutin and Galperin 2013| Lachnoclostridium
Lachnospira [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Lachnospira| Lachnospira Bryant and Small 1956
Lacticaseibacillus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Lacticaseibacillus paracasei [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 25302| CCUG 32212| CIP 103918| DSM 5622| IFO 15889| JCM 8130| Lactobacillus paracasei| Lactobacillus paracasei Collins et al. 1989| Lactobacillus sp. LBS3| Lactobacillus sp. O3| Lactobacillus sp. T16| Lactobacillus sp. T3| Lactobacillus sp. TD3| Lactobacillus sp. W-29B| Lactobacillus sp. X-3B| Lactobacillus sp. X24| LMG 13087| LMG:13087| NBRC 15889| NCDO 151| NCIMB 700151
Lactiplantibacillus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Lactobacillus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Lactobacillus| Lactobacillus Beijerinck 1901 (Approved Lists 1980) emend. Cai et al. 2012| Lactobacillus Beijerinck 1901 (Approved Lists 1980) emend. Haakensen et al. 2009| Paralactobacillus| Paralactobacillus Leisner et al. 2000
Pathogen
Lactococcus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| lactic streptococci| Lactococcus| Lactococcus Schleifer et al. 1986
Ligilactobacillus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Limosilactobacillus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Limosilactobacillus mucosae [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| CCUG 43179| CIP 106485| DSM 13345| JCM 12515| Lactobacillus mucosae| Lactobacillus mucosae Roos et al. 2000| strain S32
Listeria [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Listerella" Pirie 1927 (nom. rej. Opin. 14)| Listerella| Listeria| Listeria Pirie 1940
Mediterraneibacter [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Mediterraneibacter gnavus [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| [Ruminococcus] gnavus| ATCC 29149| Ruminococcus gnavus| Ruminococcus gnavus Moore et al. 1976| VPI C7-9
[Ruminococcus] lactaris [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 29176| Ruminococcus lactaris| Ruminococcus lactaris Moore et al. 1976
[Ruminococcus] torques [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| [Ruminococcus] torques| ATCC 27756| Ruminococcus torques| Ruminococcus torques Holdeman and Moore 1974
Oscillibacter [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Oscillibacter
Phascolarctobacterium [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Phascolarctobacterium| Phascolarctobacterium Del Dot et al. 1994
Roseburia intestinalis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| DSM 14610| NCIMB 13810| Roseburia intestinalis| Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006| strain L1-82
Roseburia hominis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| DSM 16839| NCIMB 14029| Roseburia hominis| Roseburia hominis Duncan et al. 2006| strain A2-183
Ruminococcus champanellensis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| DSM 18848| JCM 17042| Ruminococcus champanellensis| Ruminococcus champanellensis Chassard et al. 2012| strain 18P13
Ruminococcus bicirculans (ex Wegman et al. 2014) [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Ruminococcus bicirculans" Wegmann et al. 2014| Ruminococcus bicirculans| Ruminococcus sp. 80/3| strain 80/3
Ruthenibacterium [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Ruthenibacterium| Ruthenibacterium Shkoporov et al. 2016
Selenomonas [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Selenomonas| Selenomonas von Prowazek 1913
Simiaoa [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Staphylococcus aureus [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Micrococcus aureus" (Rosenbach 1884) Zopf 1885| "Micrococcus pyogenes" Lehmann and Neumann 1896| "Staphlococcus pyogenes citreus" Passet 1885| "Staphylococcus pyogenes aureus" Rosenbach 1884| ATCC 12600| ATCC 12600-U| CCM 885| CCUG 1800| CIP 65.8| DSM 20231| HAMBI 66| JCM 20624| Micrococcus aureus| Micrococcus pyogenes| NBRC 100910| NCAIM B.01065| NCCB 72047| NCTC 8532| Staphlococcus pyogenes citreus| Staphylococcus aureus| Staphylococcus aureus Rosenbach 1884| Staphylococcus pyogenes aureus
Skin infections, sinusitis, food poisoning
Streptococcus pneumoniae [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Diplococcus pneumoniae" (Klein 1884) Weichselbaum 1886| "Micrococcus pneumoniae" Klein 1884| ATCC 33400| CCUG 28588| CIP 102911| Diplococcus pneumoniae| DSM 20566| LMG 14545| LMG:14545| Micrococcus pneumoniae| NBRC 102642| NCTC 7465| Streptococcus pneumoniae| Streptococcus pneumoniae (Klein 1884) Chester 1901
Pneumonia, many other infections
Streptococcus salivarius [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 7073| CCUG 11878| CCUG 17825| CCUG 50207| CIP 102503| DSM 20560| HAMBI 1716| JCM 5707| LMG 11489| LMG:11489| NCFB 1779| NCIMB 701779| NCTC 8618| Streptococcus salivarius| Streptococcus salivarius Andrewes and Horder 1906| Streptococcus salivarius subsp. salivarius| Streptococcus salivarius subsp. salivarius Andrewes and Horder 1906| Streptococcus sp. FStet12| Streptococcus sp. HSISS4
Infectious bacteria
Thomasclavelia [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Vescimonas [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Wujia [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Alistipes finegoldii [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| AHN 2437| Alistipes finegoldii| Alistipes finegoldii Rautio et al. 2003| Bacteroides sp. ANH 2437| CCUG 46020| CIP 107999| DSM 17242| JCM 16770
Alistipes onderdonkii [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Alistipes onderdonkii| Alistipes onderdonkii Song et al. 2006| Alistipes sp. WAL 8169| ATCC BAA-1178| CCUG 48946| DSM 19147| JCM 16771| WAL 8169
Bacteroides fragilis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacteroides inaequalis" Eggerth and Gagnon 1933| "Bacteroides incommunis" Eggerth and Gagnon 1933| "Bacteroides uncatus" Eggerth and Gagnon 1933| "Fusiformis fragilis" Topley and Wilson 1929| "Pseudobacterium fragilis" Krasil'nikov 1949| "Pseudobacterium inaequalis" (Eggerth and Gagnon 1933) Krasil'nikov 1949| "Pseudobacterium incommunis" (Eggerth and Gagnon 1933) Krasil'nikov 1949| "Pseudobacterium uncatum" (Eggerth and Gagnon 1933) Krasil'nikov 1949| "Ristella fragilis" Prevot 1938| "Ristella incommunis" (Eggerth and Gagnon 1933) Prevot 1938| "Ristella uncata" (Eggerth and Gagnon 1933) Prevot 1938| "Sphaerophorus inaequalis" (Eggerth and Gagnon 1933) Prevot 1938| "Sphaerophorus intermedius" Bergan and Hovig 1968| ATCC 25285| Bacillus fragilis| Bacillus fragilis Veillon and Zuber 1898| Bacteroides fragilis| Bacteroides fragilis (Veillon and Zuber 1898) Castellani and Chalmers 1919 (Approved Lists 1980) emend. Hahnke et al. 2016| Bacteroides inaequalis| Bacteroides incommunis| Bacteroides sp. 2_1_16| Bacteroides sp. 2_1_56FAA| Bacteroides uncatus| CCUG 4856| CIP 77.16| DSM 2151| Fusiformis fragilis| JCM 11019| LMG 10263| LMG:10263| NCTC 9343| Pseudobacterium fragilis| Pseudobacterium inaequalis| Pseudobacterium incommunis| Pseudobacterium uncatum| Ristella fragilis| Ristella incommunis| Ristella uncata| Sphaerophorus inaequalis| Sphaerophorus intermedius
H02076 Bacteroides infection
Bacteroides thetaiotaomicron [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacillus thetaiotaomicron" Distaso 1912| "Bacteroides fragilis subsp. thetaiotaomicron" (Distaso 1912) Holdeman and Moore 1970| "Pseudobacterium thetaiotaomicron" (Distaso 1912) Krasil'nikov 1949| "Sphaerocillus thetaiotaomicron" (Distaso 1912) Prevot 1938| ATCC 29148| Bacillus thetaiotaomicron| bacterium NLAE-zl-C523| bacterium NLAE-zl-C579| bacterium NLAE-zl-G288| bacterium NLAE-zl-H207| bacterium NLAE-zl-H463| bacterium NLAE-zl-H492| bacterium NLAE-zl-P32| bacterium NLAE-zl-P699| Bacteroides fragilis subsp. thetaiotaomicron| Bacteroides sp. 1_1_6| Bacteroides thetaiotaomicron| Bacteroides thetaiotaomicron (Distaso 1912) Castellani and Chalmers 1919 (Approved Lists 1980) emend. Hahnke et al. 2016| CCUG 10774| CIP 104206| DSM 2079| JCM 5827| NCTC 10582| Pseudobacterium thetaiotaomicron| Sphaerocillus thetaiotaomicron| VPI 5482
Bacteroides uniformis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 8492| Bacteroides uniformis| Bacteroides uniformis Eggerth and Gagnon 1933 (Approved Lists 1980) emend. Hahnke et al. 2016| CCUG 4942| CIP 103695| DSM 6597| JCM 5828| NCTC 13054
Infectious bacteria
Bacteroides ovatus [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacteroides fragilis subsp. ovatus" (Eggerth and Gagnon 1933) Holdeman and Moore 1970| "Pasteurella ovata" (Eggerth and Gagnon 1933) Prevot 1938| "Pseudobacterium ovatum" (Eggerth and Gagnon 1933) Krasil'nikov 1949| ATCC 8483| bacterium NLAE-zl-C11| bacterium NLAE-zl-C34| bacterium NLAE-zl-C500| bacterium NLAE-zl-C57| bacterium NLAE-zl-H304| bacterium NLAE-zl-H361| bacterium NLAE-zl-H59| bacterium NLAE-zl-H73| Bacteroides fragilis subsp. ovatus| Bacteroides ovatus| Bacteroides ovatus Eggerth and Gagnon 1933 (Approved Lists 1980) emend. Hahnke et al. 2016| BCRC 10623| CCRC 10623| CCRC:10623| CCUG 4943| CIP 103756| DSM 1896| JCM 5824| NCTC 11153| Pasteurella ovata| Pseudobacterium ovatum
Bacteroides salyersiae [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC BAA-997| Bacteroides salyersae| Bacteroides salyersiae| Bacteroides salyersiae corrig. Song et al. 2005| Bacteroides sp. WAL 10018| CCUG 48945| DSM 18765| JCM 12988| WAL 10018
Barnesiella [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Barnesiella| Barnesiella Sakamoto et al. 2007 emend. Morotomi et al. 2008
Butyricimonas [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Butyricimonas| Butyricimonas Sakamoto et al. 2009 emend. Sakamoto et al. 2014
Odoribacter [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Odoribacter| Odoribacter Hardham et al. 2008
Parabacteroides [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Parabacteroides| Parabacteroides Sakamoto and Benno 2006
BMI, fat percent,blood pressure
Paraprevotella [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Paraprevotella| Paraprevotella Morotomi et al. 2009
Phocaeicola [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Phocaeicola| Phocaeicola Al Masalma et al. 2009
Phocaeicola dorei [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Bacteroides dorei| Bacteroides dorei Bakir et al. 2006 emend. Hahnke et al. 2016| Bacteroides sp. 175T| Bacteroides sp. 219| DSM 17855| JCM 13471| strain 175
Phocaeicola vulgatus [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 8482| bacterium NLAE-zl-G202| Bacteroides vulgatus| Bacteroides vulgatus Eggerth and Gagnon 1933 (Approved Lists 1980) emend. Hahnke et al. 2016| BCRC 12903| CCRC 12903| CCRC:12903| CCUG 4940| CIP 103714| DSM 1447| IFO 14291| JCM 5826| LMG 17767| LMG 7956| LMG:17767| LMG:7956| NBRC 14291| NCTC 11154
Phocaeicola salanitronis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Bacteroides salanitronis| Bacteroides salanitronis Lan et al. 2006| DSM 18170| JCM 13657| strain BL78
Porphyromonas [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Oribaculum| Oribaculum Moore and Moore 1994| Porphyromonas| Porphyromonas Shah and Collins 1988 emend. Kawamura et al. 2015| Porphyromonas Shah and Collins 1988 emend. Wagener et al. 2014| Porphyromonas Shah and Collins 1988 emend. Willems and Collins 1995
Segatella copri [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| DSM 18205| JCM 13464| Prevotella copri| Prevotella copri Hayashi et al. 2007 emend. Hahnke et al. 2016| Prevotella sp. 'Indica Stool'| Prevotella sp. CB18| Prevotella sp. CB23| Prevotella sp. CB26| Prevotella sp. CB28| Prevotella sp. CB7| strain CB7
Over 70%ile Indicator of mycotoxin present
Prevotella intermedia [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 25611| Bacteroides intermedius| Bacteroides intermedius (Holdeman and Moore 1970) Johnson and Holdeman 1983| Bacteroides melaninogenicus subsp. intermedius| Bacteroides melaninogenicus subsp. intermedius Holdeman and Moore 1970 (Approved Lists 1980)| CCUG 24041| CIP 101222| CIP 103682| DSM 20706| JCM 11150| JCM 12248| NCTC 13070| Prevotella intermedia| Prevotella intermedia (Holdeman and Moore 1970) Shah and Collins 1990 emend. Hahnke et al. 2016| strain Finegold B422| VPI 4197
Infectious bacteria
Prevotella melaninogenica [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacterium melaninogenicum" Oliver and Wherry 1921| "Fusiformis nigrescens" Schwabacher et al. 1947| "Hemophilus melaninogenicus" (sic) (Oliver and Wherry 1921) Bergey et al. 1930| "Ristella melaninogenica" (Oliver and Wherry 1921) Prevot 1938| ATCC 25845| Bacterium melaninogenicum| Bacteroides melaninogenicus| Bacteroides melaninogenicus (Oliver and Wherry 1921) Roy and Kelly 1939 (Approved Lists 1980)| Bacteroides melaninogenicus (Oliver and Wherry 1921) Roy and Kelly 1939 (Approved Lists 1980) emend. Holdeman and Johnson 1982| Bacteroides melaninogenicus melaninogenicus| Bacteroides melaninogenicus subsp. melaninogenicus| Bacteroides melaninogenicus subsp. melaninogenicus (Oliver and Wherry 1921) Roy and Kelly 1939| CCUG 4944 B| CIP 105346| DSM 7089| Fusiformis nigrescens| Hemophilus melaninogenicus| JCM 6325| NCTC 12963| Prevotella melaninogenica| Prevotella melaninogenica (Oliver and Wherry 1921) Shah and Collins 1990 emend. Hahnke et al. 2016| Prevotella melaninogenica (Oliver and Wherry 1921) Shah and Collins 1990 emend. Wu et al. 1992| Ristella melaninogenica| strain Finegold B282| VPI 15087| VPI 4196
Pathogen
Prevotella nigrescens [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 33563| CCUG 9560| CIP 105552| DSM 13386| JCM 12250| JCM 6322| NCTC 9336| Prevotella nigrescens| Prevotella nigrescens Shah and Gharbia 1992 emend. Hahnke et al. 2016| strain Lambe 729-74| VPI 8944
Tannerella [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Tannerella| Tannerella Sakamoto et al. 2002
Actinomyces [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Actinocladothrix" Affanassieff and Schulz 1889| "Discomyces" Rivolta 1878| Actinocladothrix| Actinomyces| Actinomyces Harz 1877 (Approved Lists 1980) emend. Nouioui et al. 2018| Discomyces
Pathogen
Bifidobacterium adolescentis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| AS 1.2190| ATCC 15703| BCRC 14606| Bifidobacterium adolescentis| Bifidobacterium adolescentis Reuter 1963| Bifidobacterium stercoris| Bifidobacterium stercoris Kim et al. 2010| CCRC 14606| CCRC:14606| CCUG 17359| CCUG 18363| CIP 64.59| DSM 20083| DSM 24849 [[Bifidobacterium stercoris]]| JCM 1275| JCM 15918 [[Bifidobacterium stercoris]]| KCTC 5756 [[Bifidobacterium stercoris]]| LMG 10502| LMG:10502| NCAIM B.01822| NCTC 11814| strain Eg1 [[Bifidobacterium stercoris]]
Bifidobacterium breve [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bifidobacterium parvulorum" Reuter 1963| AS 1.2213| ATCC 15700| BCRC 11846| Bifidobacterium breve| Bifidobacterium breve Reuter 1963| Bifidobacterium parvulorum| CCRC 11846| CCRC:11846| CCUG 18365| CCUG 30511 A| CIP 64.69| DSM 20213| HAMBI 558| JCM 1192| LMG 11042| LMG:11042| NCAIM B.01820| NCFB 2257| NCIMB 702257| NCTC 11815
Bifidobacterium bifidum [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Actinobacterium bifidum" (Tissier 1900) Puntoni 1937| "Actinomyces bifidus" (Tissier 1900) Nannizzi 1934| "Actinomyces parabifidus" (Weiss and Rettger 1938) Pine and Georg 1965| "Bacillus bifidus communis" Tissier 1900| "Bacillus bifidus" Tissier 1900| "Bacterium bifidum" (Tissier 1900) Lehmann and Neumann 1927| "Bacteroides bifidus" (Tissier 1900) Castellani and Chalmers 1919| "Bifidibacterium bifidum" (Tissier 1900) Prevot 1938| "Cohnistreptothrix bifidus" (Tissier 1900) Negroni and Fischer 1944| "Lactobacillus bifidus type II" Weiss and Rettger 1938| "Lactobacillus parabifidus" Weiss and Rettger 1938| "Nocardia bifida" (Tissier 1900) Vuillemin 1931| "Tissieria bifida" (Tissier 1900) Pribram 1929| Actinobacterium bifidum| Actinomyces bifidus| Actinomyces parabifidus| AS 1.2212| ATCC 29521| Bacillus bifidus| Bacillus bifidus communis| Bacterium bifidum| Bacteroides bifidus| BCRC 14615| Bifidibacterium bifidum| Bifidobacterium bifidum| Bifidobacterium bifidum (Tissier 1900) Orla-Jensen 1924| CCRC 14615| CCRC:14615| CCUG 18364| CCUG 45217| CIP 56.7| Cohnistreptothrix bifidus| DSM 20456| HAMBI 1380| IFO 14252| JCM 1255| KCTC 3202| Lactobacillus bifidus type II| Lactobacillus parabifidus| LMG 11041| LMG 8810| LMG:11041| LMG:8810| NBRC 100015| NBRC 14252| NCFB 2715| NCIMB 702715| NCTC 13001| Nocardia bifida| strain Ti| Tissieria bifida
Bifidobacterium longum [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| AS 1.2186| ATCC 15707| BCRC 11847| Bifidobacterium longum| Bifidobacterium longum Reuter 1963| Bifidobacterium sp. 12_1_47BFAA| CCRC 11847| CCRC:11847| CCUG 28903| CIP 64.62| DSM 20219| HAMBI 554| JCM 1217| KCTC 3128| LMG 10497| LMG 13197| LMG:10497| LMG:13197| NCAIM B.01819| NCFB 2259| NCIMB 702259| NCTC 11818
Collinsella aerofaciens [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacteroides aerofaciens" Eggerth 1935| "Pseudobacterium aerofaciens" (Eggerth 1935) Krasil'nikov 1949| ATCC 25986| Bacteroides aerofaciens| CCUG 28087| Collinsella aerofaciens| Collinsella aerofaciens (Eggerth 1935) Kageyama et al. 1999| DSM 3979| Eubacterium aerofaciens| Eubacterium aerofaciens (Eggerth 1935) Prevot 1938 (Approved Lists 1980)| JCM 10188| NCTC 11838| Pseudobacterium aerofaciens| VPI 1003
Corynebacterium [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Caseobacter| Caseobacter Crombach 1978| Corynebacterium| Corynebacterium Lehmann and Neumann 1896 (Approved Lists 1980) emend. Baek et al. 2018| Corynebacterium Lehmann and Neumann 1896 (Approved Lists 1980) emend. Bernard et al. 2010| Corynebacterium Lehmann and Neumann 1896 (Approved Lists 1980) emend. Nouioui et al. 2018| Turicella| Turicella Funke et al. 1994
Pathogen
Eggerthella [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Eggerthella| Eggerthella Kageyama et al. 1999| Eggerthella Wade et al. 1999 emend. Maruo et al. 2008| Eggerthella Wade et al. 1999 emend. Wurdemann et al. 2009
Olsenella [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Olsenella| Olsenella Dewhirst et al. 2001 emend. Kraatz et al. 2011
Rothia [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Rothia| Rothia Pers., 1807
Schaalia [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Schaalia| Schaalia Nouioui et al. 2018
Streptomyces [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Microstreptospora" Yan et al.| Actinopycnidium| Actinopycnidium Krasil'nikov 1962| Actinosporangium| Actinosporangium Krasil'nikov and Yuan 1961| Chainia| Chainia Thirumalachar 1955| Elytrosporangium| Elytrosporangium Falcao de Morais et al. 1966| Kitasatoa| Kitasatoa Matsumae and Hata 1968| Microstreptospora| Streptomyces| Streptomyces Waksman and Henrici 1943 (Approved Lists 1980) emend. Wellington et al. 1992| Streptomyces Waksman and Henrici 1943 (Approved Lists 1980) emend. Witt and Stackebrandt 1991| Streptoverticillium| Streptoverticillium Baldacci 1958
Acinetobacter [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Acinetobacter| Acinetobacter Brisou and Prevot 1954
Citrobacter [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Citrobacter| Citrobacter Werkman and Gillen 1932| Levinea| Levinea Young et al. 1971
Pathogen
Cronobacter [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Cronobacter" Iversen et al. 2007| Cronobacter| Cronobacter Iversen et al. 2008 emend. Brady et al. 2013
Enterobacter [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Aerobacter" Hormaeche and Edwards 1958| "Cloaca" Castellani and Chalmers 1919| Cloaca| Enterobacter| Enterobacter Hormaeche and Edwards 1960 (Approved Lists 1980) emend. Brady et al. 2013
Urinary and respiratory infections
Escherichia coli [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacillus coli" Migula 1895| "Bacterium coli commune" Escherich 1885| "Bacterium coli" (Migula 1895) Lehmann and Neumann 1896| ATCC 11775| Bacillus coli| bacterium 10a| Bacterium coli| Bacterium coli commune| bacterium E3| CCUG 24| CCUG 29300| CIP 54.8| DSM 30083| E. coli| Enterococcus coli| Escherichia coli| Escherichia coli (Migula 1895) Castellani and Chalmers 1919| Escherichia sp. 3_2_53FAA| Escherichia sp. MAR| Escherichia/Shigella coli| JCM 1649| LMG 2092| LMG:2092| NBRC 102203| NCCB 54008| NCTC 9001
Diarrheal disease in children and travelers, Foodborne diarrhea outbreaks, hemorrhagic colitis, hemolytic-uremic syndrome
Klebsiella pneumoniae [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacillus pneumoniae" (Schroeter 1886) Flugge 1886| "Bacterium pneumoniae crouposae" Zopf 1885| "Hyalococcus pneumoniae" Schroeter 1886| 'Klebsiella aerogenes' (Kruse) Taylor et al. 1956| ATCC 13883| Bacillus pneumoniae| Bacterium pneumoniae crouposae| CCUG 225| CIP 82.91| DSM 30104| HAMBI 450| Hyalococcus pneumoniae| IFO 14940| JCM 1662| Klebsiella pneumoniae| Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887| Klebsiella pneumoniae aerogenes| Klebsiella sp. 2N3| Klebsiella sp. C1(2016)| Klebsiella sp. M-AI-2| Klebsiella sp. PB12| Klebsiella sp. RCE-7| LMG 2095| LMG:2095| NBRC 14940| NCTC 9633
H00301 Klebsiella infection, Pneumonia
Raoultella [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Raoultella| Raoultella Drancourt et al. 2001
Rhizobium [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Phytomyxa" Schroeter 1886| "Rhizobacterium" Kirchner 1896| Allorhizobium| Allorhizobium de Lajudie et al. 1998| Phytomyxa| Rhizobacterium| Rhizobium| Rhizobium Frank 1889 (Approved Lists 1980) emend. Young et al. 2001
Akkermansia muciniphila [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Akkermansia muciniphila| Akkermansia muciniphila Derrien et al. 2004 emend. Hahnke et al. 2016| Akkermansia sp. YL44| ATCC BAA-835| CIP 107961| strain Muc
High Levels linked to long-lived individuals
Treponema [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Microspironema" Stiles and Pfender 1905| "Spironema" Vuillemin 1905| Microspironema| Treponema| Treponema Schaudinn 1905| Treponema Schaudinn 1905 emend Abt et al. 2013
Halobaculum [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Haloferax [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Haloferax| Haloferax Torreblanca et al. 1986 emend. Oren et al. 2009
Halogeometricum [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Halorussus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Halovivax [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Methanobrevibacter smithii [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 35061| DSM 861| Methanobrevibacter smithii| Methanobrevibacter smithii Balch and Wolfe 1981| OCM 144| strain PS
High Levels linked to long-lived individuals
Methanocorpusculum [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Methanocorpusculum| Methanocorpusculum Zellner et al. 1988 emend. Xun et al. 1989
Methanoculleus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Methanofervidicoccus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Methanothrix [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Sulfolobus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Nitrosopumilus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Nitrosopumilus" Konneke et al. 2005| Nitrosopumilus| Nitrosopumilus Qin et al. 2017
Methanomassiliicoccus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Methanomassiliicoccus| Methanomassiliicoccus Dridi et al. 2012
Aspergillus clavatus [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Aspergillus niger [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Aspergillus tanneri [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Blastomyces [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Botrytis [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Candida tropicalis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Colletotrichum [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Exophiala [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Fonsecaea [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Grosmannia [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Penicillium rubens [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Pyricularia [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Saccharomyces cerevisiae [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 18824| baker's yeast| brewer's yeast| Candida robusta| CBS 1171| NRRL Y-12632| S. cerevisiae| Saccharomyces capensis| Saccharomyces cerevisiae| Saccharomyces italicus| Saccharomyces oviformis| Saccharomyces uvarum var. melibiosus
Trichoderma [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Wickerhamomyces [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Apiotrichum [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Malassezia pachydermatis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Moesziomyces [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Ustilago [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Ustilago
Phycomyces [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Phycomyces blakesleeanus [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High