Enter Biomefx Report

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Bacteria	Also Known as	Comment
Campylobacter jejuni [species]	\| "Campylobacter fetus subsp. jejuni" Smibert 1974\| "Vibrio hepaticus" Mathey and Rissberger 1964\| "Vibrio jejuni" Jones et al. 1931\| ATCC 33560\| Campylobacter fetus subsp. jejuni\| Campylobacter jejuni\| Campylobacter jejuni (Jones et al. 1931) Veron and Chatelain 1973\| Campylobacter sp. AG18-0001\| Campylobacter sp. AG18-0002\| Campylobacter sp. AG18-0003\| Campylobacter sp. AG18-0027\| Campylobacter sp. CFSAN080682\| Campylobacter sp. OH-13-16058\| Campylobacter sp. OH-13-16470-3\| Campylobacter sp. OH-13-28726\| Campylobacter sp. OH-18-10249\| Campylobacter sp. OH-18-14936\| Campylobacter sp. OH-18-15124\| Campylobacter sp. OH-18-15133\| Campylobacter sp. OH-18-15144\| Campylobacter sp. OH-18-15321-1\| Campylobacter sp. OH-18-15321-2\| Campylobacter sp. OH-18-15321-3\| Campylobacter sp. OH-18-15321-4\| Campylobacter sp. OH-18-18281-4A\| Campylobacter sp. OH-18-19951-2\| Campylobacter sp. OH-18-8054\| CCUG 11284\| CIP 70.2\| DSM 4688\| LMG 8841\| LMG:8841\| NCTC 11351\| Vibrio hepaticus\| Vibrio jejuni	Gastroenteritis, Guillain-Barré syndrome
Helicobacter pylori [species]	\| ATCC 43504\| ATCC 49396 [[Helicobacter nemestrinae Bronsdon et al. 1991]]\| Campylobacter pylori\| Campylobacter pylori corrig. Marshall et al. 1985 emend. Fox et al. 1988\| Campylobacter pylori corrig. Marshall et al. 1985 emend. Fox et al. 1989\| Campylobacter pylori Marshall et al. 1985 corrig. Marshall and Goodwin 1987\| Campylobacter pylori subsp. pylori\| Campylobacter pylori subsp. pylori Marshall et al. 1985\| Campylobacter pyloridis\| Campylobacter pyloridis Marshall et al.1985\| CCUG 15815 B\| CCUG 17874\| CCUG 39500\| CIP 103995\| DSM 21031\| DSM 4867\| DSM 7492 [[Helicobacter nemestrinae Bronsdon et al. 1991]]\| Helicobacter nemestrinae\| Helicobacter nemestrinae Bronsdon et al. 1991\| Helicobacter pylori\| Helicobacter pylori (Marshall et al. 1985) Goodwin et al. 1989\| JCM 12093\| LMG 18041\| LMG 19449\| LMG:18041\| LMG:19449\| NCTC 11637\| NCTC 12491 [[Helicobacter nemestrinae Bronsdon et al. 1991]]\| strain Royal Perth Hospital 13487\| strain T81213-NTB [[Helicobacter nemestrinae Bronsdon et al. 1991]]	Gastric ulcers
Pseudomonas aeruginosa [species]	\| "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885\| "Bacillus pyocyaneus" (Zopf 1884) Flugge 1886\| "Bacterium aeruginosum" Cohn 1872\| "Bacterium aeruginosum" Schroeter 1872\| "Bacterium pyocyaneum" (Zopf 1884) Lehmann and Neumann 1896\| "Micrococcus pyocyaneus" Zopf 1884\| "Pseudomonas pyocyanea" (Zopf 1884) Migula 1895\| ATCC 10145\| ATCC 10145-U\| Bacillus aeruginosus\| Bacillus pyocyaneus\| Bacterium aeruginosum\| bacterium ASFP-37\| bacterium ASFP-38\| bacterium ASFP-45\| bacterium ASFP-46\| bacterium ASFP-48\| bacterium CRM125\| Bacterium pyocyaneum\| CCEB 481\| CCUG 28447\| CCUG 29297\| CCUG 551\| CFBP 2466\| CIP 100720\| DSM 50071\| IBCS 277\| IFO 12689\| JCM 5962\| LMG 1242\| LMG:1242\| Micrococcus pyocyaneus\| NBRC 12689\| NCCB 76039\| NCIB 8295\| NCIB:8295\| NCIMB 8295\| NCTC 10332\| NRRL B-771\| probable synonym or variety: "Pseudomonas polycolor" Clara 1930\| Pseudomonas aeruginosa\| Pseudomonas aeruginosa (Schroeter 1872) Migula 1900\| Pseudomonas polycolor\| Pseudomonas pyocyanea\| Pseudomonas sp. 2_1_26\| Pseudomonas sp. ACP_02\| Pseudomonas sp. CRRI 93\| Pseudomonas sp. HSA1/2016\| Pseudomonas sp. NCIM 2036\| Pseudomonas sp. NCIM 2862\| Pseudomonas sp. PR_01\| Pseudomonas sp. PSE5\| Pseudomonas sp. RV3\| Pseudomonas sp. UFT2/2016\| RH 815\| VKM B-588	Opportunistic, nosocomial pneumonia and sepsis
Enterobacteriaceae [family]	\| Enterobacteraceae\| Enterobacteraceae (ex Lapage 1979) Lapage 1982\| Enterobacteriaceae\| Enterobacteriaceae (ex Rahn 1937) Ewing et al. 1980\| Enterobacteriaceae Rahn 1937 (Approved Lists 1980) emend. Adeolu et al. 2016\| gamma-3 proteobacteria
Citrobacter freundii [species]	\| "Bacterium freundii" Braak 1928\| "Escherichia freundii" (Braak 1928) Yale 1939\| "Salmonella ballerup" Kauffmann and Mller 1940\| "Salmonella hormaechei" Monteverde 1944\| ATCC 8090\| Bacterium freundii\| CCUG 418\| CIP 57.32\| Citrobacter ballerupensis\| Citrobacter freundii\| Citrobacter freundii (Braak 1928) Werkman and Gillen 1932\| Citrobacter sp. HPC1276\| Citrobacter sp. KDS 3\| DSM 30039\| Escherichia freundii\| HAMBI 1695\| IFO 12681\| JCM 1657\| LMG 3246\| LMG:3246\| NBRC 12681\| NCAIM B.01468\| NCTC 9750\| NRRL B-2643\| Salmonella ballerup\| Salmonella hormaechei\| the Ballerup group of bacteria\| the Bethesda group of bacteria
Escherichia coli [species]	\| "Bacillus coli" Migula 1895\| "Bacterium coli commune" Escherich 1885\| "Bacterium coli" (Migula 1895) Lehmann and Neumann 1896\| ATCC 11775\| Bacillus coli\| bacterium 10a\| Bacterium coli\| Bacterium coli commune\| bacterium E3\| CCUG 24\| CCUG 29300\| CIP 54.8\| DSM 30083\| E. coli\| Enterococcus coli\| Escherichia coli\| Escherichia coli (Migula 1895) Castellani and Chalmers 1919\| Escherichia sp. 3_2_53FAA\| Escherichia sp. MAR\| Escherichia/Shigella coli\| JCM 1649\| LMG 2092\| LMG:2092\| NBRC 102203\| NCCB 54008\| NCTC 9001	Diarrheal disease in children and travelers, Foodborne diarrhea outbreaks, hemorrhagic colitis, hemolytic-uremic syndrome
Hafnia alvei [species]	\| "Enterobacter aerogenes subsp. hafniae" Ewing 1963\| "Enterobacter alvei" (Mller 1954) Sakazaki 1961\| "Enterobacter hafniae" Ewing and Fife 1968\| ATCC 13337\| CCUG 41547\| CIP 57.31\| DSM 30163\| Enterobacter aerogenes subsp. hafniae\| Enterobacter alvei\| Enterobacter hafniae\| Hafnia alvei\| Hafnia alvei Moller 1954\| Hafnia alvei sensu stricto genomosp. 1\| HAMBI 1279\| HAMBI 1876\| JCM 1666\| LMG 10392\| LMG:10392\| NCTC 8105\| NRRL B-4260
Klebsiella pneumoniae [species]	\| "Bacillus pneumoniae" (Schroeter 1886) Flugge 1886\| "Bacterium pneumoniae crouposae" Zopf 1885\| "Hyalococcus pneumoniae" Schroeter 1886\| 'Klebsiella aerogenes' (Kruse) Taylor et al. 1956\| ATCC 13883\| Bacillus pneumoniae\| Bacterium pneumoniae crouposae\| CCUG 225\| CIP 82.91\| DSM 30104\| HAMBI 450\| Hyalococcus pneumoniae\| IFO 14940\| JCM 1662\| Klebsiella pneumoniae\| Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887\| Klebsiella pneumoniae aerogenes\| Klebsiella sp. 2N3\| Klebsiella sp. C1(2016)\| Klebsiella sp. M-AI-2\| Klebsiella sp. PB12\| Klebsiella sp. RCE-7\| LMG 2095\| LMG:2095\| NBRC 14940\| NCTC 9633	H00301 Klebsiella infection, Pneumonia
Proteus mirabilis [species]	\| ATCC 29906\| CCUG 26767\| CIP 103181\| DSM 4479\| JCM 1669\| LMG 3257\| LMG:3257\| NCTC 11938\| Proteus mirabilis\| Proteus mirabilis Hauser 1885
Proteus vulgaris [species]	\| ATCC 29905\| CCUG 35382\| CCUG 39507\| CDC PR1\| CIP 104989\| LMG 16708\| LMG:16708\| NCTC 13145\| not ATCC 13315\| not DSM 30118\| not HAMBI 91\| not IFO 3851\| not NBRC 3851\| not NCIB 4175\| not NCIMB 4175\| not NCTC 4175\| not NRRL B-3405\| Proteus vulgaris\| Proteus vulgaris Hauser 1885 (Approved Lists 1980) emend. Judicial Commission 1999\| strain PR 1
Yersinia enterocolitica [species]	\| "Bacterium enterocoliticum" Schleifstein and Coleman 1939\| ATCC 9610\| Bacterium enterocoliticum\| CCUG 11291\| CCUG 12369\| CIP 80.27\| DSM 4780\| JCM 7577\| LMG 7899\| LMG:7899\| NBRC 105693\| NCTC 12982\| Yersinia enterocolitica\| Yersinia enterocolitica (Schleifstein and Coleman 1939) Frederiksen 1964	Yersiniosis
Vibrio cholerae [species]	\| "Bacillo virgola del Koch" Trevisan 1884\| "Bacillus cholerae" (Pacini 1854) Trevisan 1884\| "Bacillus cholerae-asiaticae" Trevisan 1884\| "Kommabacillus" Koch 1884\| "Liquidivibrio cholerae" (Pacini 1854) Orla-Jensen 1909\| "Microspira comma" Schroeter 1886\| "Pacinia cholerae-asiaticae" (Trevisan 1884) Trevisan 1885\| "Spirillum cholerae" (Pacini 1854) Mac1889\| "Spirillum cholerae-asiaticae" (Trevisan 1884) Zopf 1885\| "Vibrio cholera" (sic) Pacini 1854\| "Vibrio cholerae-asiaticae" (Trevisan 1884) Pfeiffer 1896\| "Vibrio comma" (Schroeter 1886) Blanchard 1906\| ATCC 14035\| ATCC 14547 [[Vibrio albensis]]\| Bacillo virgola del Koch\| Bacillus cholerae\| Bacillus cholerae-asiaticae\| CCUG 48664 [[Vibrio albensis]]\| CCUG 9118 A\| CECT 514\| CIP 62.13\| Kommabacillus\| Liquidivibrio cholerae\| LMG 4406 [[Vibrio albensis]]\| LMG:4406 [[Vibrio albensis]]\| Microspira comma\| NCIMB 41 [[Vibrio albensis]]\| NCTC 8021\| Pacinia cholerae-asiaticae\| Spirillum cholerae\| Spirillum cholerae-asiaticae\| Vibrio albensis\| Vibrio albensis Lehmann and Neumann 1896\| Vibrio cholera\| Vibrio cholerae\| Vibrio cholerae biovar albensis\| Vibrio cholerae bv. albensis\| Vibrio cholerae Pacini 1854\| Vibrio cholerae-asiaticae\| Vibrio comma	Cholera
Bacteroidaceae [family]	\| Bacteroidaceae\| Bacteroidaceae Pribram 1933
Bacteroides fragilis [species]	\| "Bacteroides inaequalis" Eggerth and Gagnon 1933\| "Bacteroides incommunis" Eggerth and Gagnon 1933\| "Bacteroides uncatus" Eggerth and Gagnon 1933\| "Fusiformis fragilis" Topley and Wilson 1929\| "Pseudobacterium fragilis" Krasil'nikov 1949\| "Pseudobacterium inaequalis" (Eggerth and Gagnon 1933) Krasil'nikov 1949\| "Pseudobacterium incommunis" (Eggerth and Gagnon 1933) Krasil'nikov 1949\| "Pseudobacterium uncatum" (Eggerth and Gagnon 1933) Krasil'nikov 1949\| "Ristella fragilis" Prevot 1938\| "Ristella incommunis" (Eggerth and Gagnon 1933) Prevot 1938\| "Ristella uncata" (Eggerth and Gagnon 1933) Prevot 1938\| "Sphaerophorus inaequalis" (Eggerth and Gagnon 1933) Prevot 1938\| "Sphaerophorus intermedius" Bergan and Hovig 1968\| ATCC 25285\| Bacillus fragilis\| Bacillus fragilis Veillon and Zuber 1898\| Bacteroides fragilis\| Bacteroides fragilis (Veillon and Zuber 1898) Castellani and Chalmers 1919 (Approved Lists 1980) emend. Hahnke et al. 2016\| Bacteroides inaequalis\| Bacteroides incommunis\| Bacteroides sp. 2_1_16\| Bacteroides sp. 2_1_56FAA\| Bacteroides uncatus\| CCUG 4856\| CIP 77.16\| DSM 2151\| Fusiformis fragilis\| JCM 11019\| LMG 10263\| LMG:10263\| NCTC 9343\| Pseudobacterium fragilis\| Pseudobacterium inaequalis\| Pseudobacterium incommunis\| Pseudobacterium uncatum\| Ristella fragilis\| Ristella incommunis\| Ristella uncata\| Sphaerophorus inaequalis\| Sphaerophorus intermedius	H02076 Bacteroides infection
Phocaeicola vulgatus [species]	\| ATCC 8482\| bacterium NLAE-zl-G202\| Bacteroides vulgatus\| Bacteroides vulgatus Eggerth and Gagnon 1933 (Approved Lists 1980) emend. Hahnke et al. 2016\| BCRC 12903\| CCRC 12903\| CCRC:12903\| CCUG 4940\| CIP 103714\| DSM 1447\| IFO 14291\| JCM 5826\| LMG 17767\| LMG 7956\| LMG:17767\| LMG:7956\| NBRC 14291\| NCTC 11154
Porphyromonas gingivalis [species]	\| ATCC 33277\| Bacteroides gingivalis\| Bacteroides gingivalis Coykendall et al. 1980\| CCUG 25893\| CCUG 25928\| CIP 103683\| DSM 20709\| JCM 12257\| NCTC 11834\| Porphyromonas gingivalis\| Porphyromonas gingivalis (Coykendall et al. 1980) Shah and Collins 1988 emend. Hahnke et al. 2016\| strain 2561	Pathogen
Oxalobacter formigenes [species]	\| ATCC 35274\| CIP 106513\| Oxalobacter formigenes\| Oxalobacter formigenes Allison et al. 1985\| strain OxB
Faecalibacterium prausnitzii [species]	\| "Bacillus mucosus anaerobius" Prausnitz 1922\| "Bacteroides praussnitzii" (sic) Hauduroy et al. 1937\| ATCC 27768\| Bacillus mucosus anaerobius\| Bacteroides praussnitzii\| butyrate-producing bacterium A2-165\| Faecalibacterium prausnitzii\| Faecalibacterium prausnitzii (Hauduroy et al. 1937) Duncan et al. 2002\| Fusobacterium prausnitzii\| Fusobacterium prausnitzii (Hauduroy et al. 1937) Moore and Holdeman 1970 (Approved Lists 1980)\| NCIMB 13872
Bacteroidota [phylum]	\| Bacteroidaeota\| Bacteroidaeota Oren et al. 2015\| Bacteroides-Cytophaga-Flexibacter group\| Bacteroidetes\| Bacteroidetes Krieg et al. 2012\| Bacteroidota\| BCF group\| CFB group\| CFB group bacteria\| Cytophaga-Flexibacter-Bacteroides phylum	Over 70%ile, prone to being fat
Pseudomonadota [phylum]	\| Alphaproteobacteraeota\| Alphaproteobacteraeota Oren et al. 2015\| Alphaproteobacteriota\| Proteobacteria\| Proteobacteria [class] Stackebrandt et al. 1988\| Proteobacteria Garrity et al. 2005\| purple bacteria\| purple bacteria and relatives\| purple non-sulfur bacteria\| purple photosynthetic bacteria\| purple photosynthetic bacteria and relatives
Bacillota [phylum]	\| Bacillaeota\| Bacillaeota Oren et al. 2015\| Bacillota\| Bacillus/Clostridium group\| clostridial firmicutes\| Clostridium group firmicutes\| Firmacutes\| Firmicutes\| Firmicutes corrig. Gibbons and Murray 1978\| Low G+C firmicutes\| low G+C Gram-positive bacteria\| low GC Gram+
Streptococcaceae [family]	\| Streptococcaceae\| Streptococcaceae Deibel and Seeley 1974
Enterococcus gallinarum [species]	\| ATCC 49573\| CCUG 18658\| CECT 970\| CIP 103013\| DSM 24841\| Enterococcus gallinarum\| Enterococcus gallinarum (Bridge and Sneath 1982) Collins et al. 1984\| JCM 8728\| LMG 13129\| LMG:13129\| NBRC 100675\| NCDO 2313\| NCIMB 702313\| NCTC 12359\| strain F87/276\| strain PB21\| Streptococcus gallinarum\| Streptococcus gallinarum Bridge and Sneath 1982
Clostridioides difficile [species]	\| "Bacillus difficilis" Hall and O'Toole 1935\| "Peptoclostridium difficile" Yutin and Galperin 2013\| AS 1.2184\| ATCC 9689\| Bacillus difficilis\| BCRC 10642\| CCRC 10642\| CCRC:10642\| CCUG 4938\| CIP 104282\| Clostridioides difficile\| Clostridioides difficile (Hall and O'Toole 1935) Lawson et al. 2016\| Clostridium difficile\| Clostridium difficile (Hall and O'Toole 1935) Prevot 1938 (Approved Lists 1980)\| Clostridium difficle\| Clostridium sp. HMSC19D05\| DSM 1296\| DSMZ 1296\| JCM 1296\| LMG 15861\| LMG:15861\| NCIMB 10666\| NCTC 11209\| Peptoclostridium difficile	Colitis
Clostridium perfringens [species]	\| "Bacillus perfringens" Veillon and Zuber 1898\| "Bacterium welchii" Migula 1900\| 'Clostridium plagarum'\| ATCC 13124\| Bacillus perfringens\| Bacterium welchii\| BCRC 10913\| CCRC 10913\| CCRC:10913\| CCUG 1795\| CIP 103409\| Clostridium perfringens\| Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937\| Clostridium plagarum\| Clostridium sp. NCIM 2677\| DSM 756\| JCM 1290\| LMG 11264\| LMG:11264\| NCAIM B.01417\| NCCB 89165\| NCIMB 6125\| NCTC 8237	Food poisoning, gas gangrene
Limosilactobacillus reuteri [species]	\| ATCC 23272\| CCUG 33624\| CIP 101887\| DSM 20016\| IFO 15892\| JCM 1112\| Lactobacillus fermentum biotype II\| Lactobacillus fermentum subsp. reuteri\| Lactobacillus reuteri\| Lactobacillus reuteri (plasmid pGT232)\| Lactobacillus reuteri Kandler et al. 1982\| Lactobacillus sp. I49\| LMG 13557\| LMG 9213\| LMG:13557\| LMG:9213\| NBRC 15892\| NRRL B-14171
Bifidobacterium adolescentis [species]	\| AS 1.2190\| ATCC 15703\| BCRC 14606\| Bifidobacterium adolescentis\| Bifidobacterium adolescentis Reuter 1963\| Bifidobacterium stercoris\| Bifidobacterium stercoris Kim et al. 2010\| CCRC 14606\| CCRC:14606\| CCUG 17359\| CCUG 18363\| CIP 64.59\| DSM 20083\| DSM 24849 [[Bifidobacterium stercoris]]\| JCM 1275\| JCM 15918 [[Bifidobacterium stercoris]]\| KCTC 5756 [[Bifidobacterium stercoris]]\| LMG 10502\| LMG:10502\| NCAIM B.01822\| NCTC 11814\| strain Eg1 [[Bifidobacterium stercoris]]
Ascomycota [phylum]	\| ascomycetes\| Ascomycota\| sac fungi
Aspergillus [genus]	\| Aspergillus\| Petromyces
Cryptococcus [genus]	\| Cryptococcus\| Filobasidiella\| mitosporic Filobasidiella
Candida [genus]
Giardia intestinalis [species]
Entamoeba histolytica [species]
Cryptosporidium [genus]
Microsporidia [phylum]
Blastocystis [genus]	\| Blastocystis
Bifidobacterium pseudocatenulatum [species]	\| AS 1.2277\| ATCC 27919\| BCRC 15476\| Bifidobacterium pseudocatenulatum\| Bifidobacterium pseudocatenulatum Scardovi et al. 1979\| CCRC 15476\| CCRC:15476\| CCUG 34989\| CIP 104168\| DSM 20438\| HAMBI 562\| JCM 1200\| LMG 10505\| LMG:10505\| strain B1279
Euryarchaeota [phylum]	\| "Euryarchaeota" Woese et al. 1990\| Euryarchaeota\| Euryarchaeota Garrity and Holt 2002\| euryarchaeotes\| Methanobacteraeota\| Methanobacteraeota Oren et al. 2015\| Methanobacteriota
Salmonella enterica [species]	\| "Bacillus cholerae-suis" Smith 1894\| "Salmonella enterica" Kauffmann and Edwards 1952\| ATCC 13312 [[Salmonella choleraesuis corrig. (Smith 1894) Weldin 1927 (Approved Lists 1980)]]\| ATCC 43971\| ATCC 700720\| Bacillus cholerae-suis\| CCUG 42060\| CECT 915 [[Salmonella choleraesuis corrig. (Smith 1894) Weldin 1927 (Approved Lists 1980)]]\| CIP 55-133 [[Salmonella choleraesuis corrig. (Smith 1894) Weldin 1927 (Approved Lists 1980)]]\| CIP 55.133 [[Salmonella choleraesuis corrig. (Smith 1894) Weldin 1927 (Approved Lists 1980)]]\| CIP 58.57 [[Salmonella choleraesuis corrig. (Smith 1894) Weldin 1927 (Approved Lists 1980)]]\| CIP 60.62\| CIP:55-133 [[Salmonella choleraesuis corrig. (Smith 1894) Weldin 1927 (Approved Lists 1980)]]\| DSM 14846 [[Salmonella choleraesuis corrig. (Smith 1894) Weldin 1927 (Approved Lists 1980)]]\| DSM 17058\| JCM 1651 [[Salmonella choleraesuis corrig. (Smith 1894) Weldin 1927 (Approved Lists 1980)]]\| NBRC 105684 [[Salmonella choleraesuis corrig. (Smith 1894) Weldin 1927 (Approved Lists 1980)]]\| NBRC 13245\| NCIMB 11450\| NCTC 12416\| NCTC 5735 [[Salmonella choleraesuis corrig. (Smith 1894) Weldin 1927 (Approved Lists 1980)]]\| Salmonella cholerae-suis\| Salmonella choleraesuis\| Salmonella choleraesuis corrig. (Smith 1894) Weldin 1927 (Approved Lists 1980)\| Salmonella enterica\| Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987\| Salmonella enterica ser. choleraesuis\| Salmonella sp. AMC 200\| Salmonella sp. AMC 238\| Salmonella sp. AMC 239\| Salmonella sp. AMC 240\| Salmonella sp. AMC 253\| Salmonella sp. AMC 257\| Salmonella sp. AMC 265\| Salmonella sp. AMC 266\| Salmonella sp. AMC 267\| Salmonella sp. AMC 268\| Salmonella sp. AMC 270\| Salmonella sp. AMC 28\| Salmonella sp. AMC 289\| Salmonella sp. AMC 291\| Salmonella sp. AMC 294\| Salmonella sp. AMC 299\| Salmonella sp. AMC 301\| Salmonella sp. AMC 327\| Salmonella sp. AMC 90\| Salmonella sp. FDA00013420\| Salmonella sp. FDA00013433\| Salmonella sp. FDA00013434\| Salmonella sp. FDA00013435\| Salmonella sp. FDA00013436\| Salmonella sp. FDA00013437\| Salmonella sp. FDA00013438\| Salmonella sp. FDA00013439\| Salmonella sp. FDA00013440\| Salmonella sp. FDA00013468\| Salmonella sp. FDA00013469\| Salmonella sp. FDA00013470\| Salmonella sp. FDA00013495\| Salmonella sp. FDA00013496\| Salmonella sp. FDA00013499\| Salmonella sp. FDA00013500\| Salmonella sp. FDA00013513\| Salmonella sp. FDA00013514\| Salmonella sp. FDA00013515\| Salmonella sp. FDA00013516\| Salmonella sp. FDA00013517\| Salmonella sp. FDA00013518\| Salmonella sp. FDA00013519\| Salmonella sp. FDA00013520\| Salmonella sp. FDA00013521\| Salmonella sp. FDA00013522\| Salmonella sp. FDA00013523\| Salmonella sp. FDA00013524\| Salmonella sp. FDA00013525\| Salmonella sp. FDA00013526\| Salmonella sp. FDA00013597\| Salmonella sp. HC-257\| Salmonella sp. IA1-174\| Salmonella sp. MH3-A1\| Salmonella sp. MH3-A2\| Salmonella sp. MH3-A3\| Salmonella sp. MH3-C\| Salmonella sp. MH3-D1\| Salmonella sp. MH3-D2\| Salmonella sp. MH3-D3\| Salmonella sp. MH3-D4\| Salmonella sp. MH3-Z1\| Salmonella sp. MH3-Z2\| Salmonella sp. MH4-A2\| Salmonella sp. MH4-A3\| Salmonella sp. MH4-A4\| Salmonella sp. MH4-Z2\| Salmonella sp. NYVetLIRN-85\| Salmonella sp. NYVetLIRN-86\| Salmonella sp. NYVetLIRN-87\| Salmonella sp. NYVetLIRN-88\| Salmonella sp. OH-18-15149\| Salmonella sp. OH-18-15334\| Salmonella sp. OH-18-15363\| Salmonella sp. OH-18-16886\| Salmonella sp. OH-18-16934\| Salmonella sp. OH-18-18132-1\| Salmonella sp. OH-18-18132-10\| Salmonella sp. OH-18-18132-11\| Salmonella sp. OH-18-18132-12\| Salmonella sp. OH-18-18132-13\| Salmonella sp. OH-18-18132-14\| Salmonella sp. OH-18-18132-15\| Salmonella sp. OH-18-18132-2\| Salmonella sp. OH-18-18132-3\| Salmonella sp. OH-18-18132-4\| Salmonella sp. OH-18-18132-5\| Salmonella sp. OH-18-18132-6\| Salmonella sp. OH-18-18132-7\| Salmonella sp. OH-18-18132-8\| Salmonella sp. OH-18-18132-9\| Salmonella sp. OH-18-18281-1\| Salmonella sp. OH-18-18281-2\| Salmonella sp. OH-18-18411\| Salmonella sp. OH-18-18446\| Salmonella sp. OH-18-18447\| Salmonella sp. OH-18-18941\| Salmonella sp. OH-18-19201\| Salmonella sp. OH-18-19951-1\| Salmonella sp. OH-18-20073-2T\| Salmonella sp. OH-18-20117-1\| Salmonella sp. OH-18-20132-7\| Salmonella sp. OH-18-20225-1-S\| Salmonella sp. OH-18-20225-2-S\| Salmonella sp. OH-18-20299-1\| Salmonella sp. OH-18-20299-2\| Salmonella sp. OH-18-20299-3\| Salmonella sp. OH-18-20299-4\| Salmonella sp. OH-18-20299-5\| Salmonella sp. OH-18-20299-6\| Salmonella sp. OH-18-20299-7\| Salmonella sp. OH-18-20299-8\| Salmonella sp. OH-18-20386\| Salmonella sp. OH-18-20895\| Salmonella sp. OH-18-20897\| Salmonella sp. OH-18-21102\| Salmonella sp. OH-18-21112\| Salmonella sp. OH-18-21175\| Salmonella sp. OH-18-21493-S\| Salmonella sp. OH-18-21628\| Salmonella sp. OH-18-21629\| Salmonella sp. OH-18-21765\| Salmonella sp. OH-18-21865-2\| Salmonella sp. OH-18-22026\| Salmonella sp. OH-18-22045\| Salmonella sp. OH-18-22168\| Salmonella sp. OH-18-22269-1\| Salmonella sp. OH-18-22479\| Salmonella sp. SAL-18-VL-LA-TX-0007\| Salmonella sp. SAL-18-VL-LA-TX-0008\| Salmonella sp. SAL-18-VL-LA-TX-0009\| Salmonella sp. SAL-18-VL-NY-MS-0001\| Salmonella sp. SAL-18-VL-NY-MS-0002\| Salmonella sp. SAL-18-VL-NY-MS-0003\| Salmonella sp. SAL-18-VL-NY-NJ-0001\| Salmonella sp. SAL-18-VL-NY-UP-NBC-0001\| Salmonella sp. SAL-18-VL-NY-UP-NBC-0004\| Salmonella sp. SAL-18-VL-NY-UP-NBC-0005\| Salmonella sp. SAL-18-VL-NY-UP-NBC-0006\| Salmonella sp. SAL-18-VL-NY-UP-NBC-0007\| Salmonella sp. SAL-18-VL-OH-IN-0001\| Salmonella sp. SAL-18-VL-OH-IN-0002\| Salmonella sp. SAL-18-VL-OH-IN-0003\| Salmonella sp. SAL-18-VL-OH-IN-0005\| Salmonella sp. SAL-18-VL-OH-IN-0007\| Salmonella sp. SAL-18-VL-OH-WA-0012\| Salmonella sp. SAL-18-VL-OH-WA-0013\| Salmonella sp. SAL-18-VL-OH-WA-0014\| Salmonella sp. SAL-18-VL-OH-WA-0017\| Salmonella sp. TTU_251\| Salmonella sp. TTU_258\| Salmonella sp. TTU_262\| Salmonella sp. TTU_264\| Salmonella sp. TTU_265\| Salmonella sp. TTU_266\| Salmonella sp. TTU_267\| Salmonella sp. TTU_269\| Salmonella sp. TTU_274\| Salmonella sp. TTU_279\| Salmonella sp. TTU_282\| Salmonella sp. TTU_284\| Salmonella sp. TTU_287\| Salmonella sp. TTU_289\| Salmonella sp. TTU_297\| Salmonella sp. TTU_298\| Salmonella sp. TTU_299\| Salmonella sp. TTU_303\| Salmonella sp. TTU_304\| Salmonella sp. TTU_305\| Salmonella sp. TTU_306\| Salmonella sp. TTU_307\| Salmonella sp. TTU_308\| Salmonella sp. TTU_309\| Salmonella sp. TTU_310\| Salmonella sp. TTU_311\| Salmonella sp. TTU_312\| Salmonella sp. TTU_313\| Salmonella sp. TTU_314\| Salmonella sp. TTU_315\| Salmonella sp. TTU_316\| Salmonella sp. TTU_317\| Salmonella sp. TTU_318\| Salmonella sp. TTU_319\| Salmonella sp. TTU_320\| Salmonella sp. TTU_321\| Salmonella sp. TTU_322\| Salmonella sp. TTU_323\| Salmonella sp. TTU_324\| Salmonella sp. TTU_325\| Salmonella sp. TTU_326\| Salmonella sp. TTU_327\| Salmonella sp. TTU_328\| Salmonella sp. TTU_329\| Salmonella sp. TTU_330\| Salmonella sp. TTU_331\| Salmonella sp. TTU_332\| Salmonella sp. TTU_333\| Salmonella sp. TTU_334\| Salmonella sp. TTU_335\| Salmonella sp. TTU_338\| Salmonella sp. TTU_345\| Salmonella sp. TTU_352\| Salmonella sp. TTU_353\| Salmonella sp. TTU_357\| Salmonella sp. TTU_358\| Salmonella sp. TTU_359\| Salmonella sp. TXACF1801691\| Salmonella sp. Z-172\| Salmonella sp. ZH-248\| SGSC 1412\| strain LT2	Salmonellosis
[Clostridium] scindens [species]	\| [Clostridium] scindens\| ATCC 35704\| CIP 106687\| Clostridium scindens\| Clostridium scindens Morris et al. 1985\| DSM 5676\| Eubacterium sp. (strain VPI 12708)\| Eubacterium sp. VPI 12708\| Eubacterium sp. VPI-12708\| Eubacterium VPI-12708\| JCM 6567\| strain Bokkenheuser 19
Bifidobacteriaceae [family]	\| Bifidobacteriaceae\| Bifidobacteriaceae Stackebrandt et al. 1997 emend. Zhi et al. 2009
Veillonellaceae [family]	\| cluster IX\| Megasphaera group\| Veillonellaceae\| Veillonellaceae Rogosa 1971 (Approved Lists 1980) emend. Campbell et al. 2015\| Veillonellaceae Rogosa 1971 (Approved Lists 1980) emend. Marchandin et al. 2010	Associated with Iron Deficiency (High)
Clostridiaceae [family]	\| Clostridiaceae\| Clostridiaceae Pribram 1933
Fusobacteriota [phylum]	\| Fusobacteraeota\| Fusobacteraeota Oren et al. 2015\| Fusobacteria\| Fusobacteria Garrity and Holt 2001\| Fusobacteriota
Bilophila wadsworthia [species]	\| ATCC 49260\| Bilophila wadsworthia\| Bilophila wadsworthia Baron et al. 1990\| CCUG 32349\| strain 7959\| WAL 7959
Agathobacter rectalis [species]	\| "Bacteroides rectalis" Hauduroy et al. 1937\| "Pseudobacterium rectale" (Hauduroy et al. 1937) Krasil'nikov 1949\| 'Roseburia rectale'\| [Eubacterium] rectale\| Agathobacter rectalis\| Agathobacter rectalis (Hauduroy et al. 1937) Rosero et al. 2016\| ATCC 33656\| Bacteroides rectalis\| CIP 105953\| DSM 17629\| Eubacterium rectale\| Eubacterium rectale (Hauduroy et al. 1937) Prevot 1938\| NCIMB 14373\| not ATCC 25578\| not VPI 0989\| Pseudobacterium rectale\| Roseburia rectale\| strain A1-86\| VPI 0990
Ruminococcus bromii [species]	\| ATCC 27255\| Ruminococcus bromii\| Ruminococcus bromii Moore et al. 1972
Sutterella wadsworthensis [species]	\| ATCC 51579\| CCUG 42229\| CIP 104799\| DSM 14016\| Sutterella wadsworthensis\| Sutterella wadsworthensis Wexler et al. 1996\| WAL 9799
Parabacteroides merdae [species]	\| ATCC 43184\| Bacteroides merdae\| Bacteroides merdae Johnson et al. 1986\| CCUG 38734\| CIP 104202\| JCM 9497\| NCTC 13052\| Parabacteroides merdae\| Parabacteroides merdae (Johnson et al. 1986) Sakamoto and Benno 2006 emend. Hahnke et al. 2016\| VPI T4-1	Infectious bacteria
Raoultella ornithinolytica [species]	\| ATCC 31898\| CCUG 26769\| CIP 103364\| CIP 103576\| DSM 7464\| JCM 6096\| Klebsiella ornithinolytica\| Klebsiella ornithinolytica Sakazaki et al. 1989\| Klebsiella sp. Yangling I2\| NBRC 105727\| NIH 90-72\| Raoultella ornithinolytica\| Raoultella ornithinolytica (Sakazaki et al. 1989) Drancourt et al. 2001
Malassezia [genus]	\| Malassezia
Verrucomicrobiota [phylum]	\| Verrucomicrobaeota\| Verrucomicrobaeota Oren et al. 2015\| Verrucomicrobia\| Verrucomicrobia (Hedlund et al. 1997) Yoon et al. 2010\| Verrucomicrobia Hedlund 2012\| Verrucomicrobiota
Candidatus Saccharibacteria [phylum]	\| "Candidatus Saccharibacteria" Albertsen et al. 2013\| candidate division 'Torf, mittlere Schicht' 7\| candidate division TM7\| Candidatus Saccharibacteria\| Saccharibacteria
Erysipelotrichaceae [family]	\| Erysipelothrix group\| Erysipelothrixaceae\| Erysipelotrichaceae\| Erysipelotrichaceae Verbarg et al. 2004 emend. Tegtmeier et al. 2016
Brachyspiraceae [family]	\| "Brachyspiraceae" Paster and Dewhirst 2000\| Brachyspiraceae\| Brachyspiraceae Paster 2012
Roseburia intestinalis [species]	\| DSM 14610\| NCIMB 13810\| Roseburia intestinalis\| Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006\| strain L1-82
Rikenellaceae [family]	\| Rikenellaceae\| Rikenellaceae Krieg et al. 2012
Porphyromonadaceae [family]	\| Porphyromonadaceae\| Porphyromonadaceae Krieg 2012 emend. Ormerod et al. 2016
Prevotellaceae [family]	\| Prevotellaceae\| Prevotellaceae Krieg 2012
Lachnospiraceae [family]	\| Lachnospiraceae\| Lachnospiraceae Rainey 2010
Eubacteriaceae [family]	\| Eubacteriaceae\| Eubacteriaceae Ludwig et al. 2010
Desulfovibrionaceae [family]	\| Desulfovibrionaceae\| Desulfovibrionaceae Kuever et al. 2006
Actinomycetota [phylum]	\| Actinobacteraeota\| Actinobacteraeota Oren et al. 2015\| Actinobacteria\| Actinobacteriota
Spirochaetota [phylum]	\| Spirochaetae\| Spirochaetaeota\| Spirochaetaeota Oren et al. 2015\| Spirochaetes\| Spirochaetes Garrity and Holt 2001\| Spirochaetota
Oscillospiraceae [family]	\| Oscillospiraceae\| Oscillospiraceae Peshkoff 1940
Bifidobacterium longum [species]	\| AS 1.2186\| ATCC 15707\| BCRC 11847\| Bifidobacterium longum\| Bifidobacterium longum Reuter 1963\| Bifidobacterium sp. 12_1_47BFAA\| CCRC 11847\| CCRC:11847\| CCUG 28903\| CIP 64.62\| DSM 20219\| HAMBI 554\| JCM 1217\| KCTC 3128\| LMG 10497\| LMG 13197\| LMG:10497\| LMG:13197\| NCAIM B.01819\| NCFB 2259\| NCIMB 702259\| NCTC 11818
Akkermansia muciniphila [species]	\| Akkermansia muciniphila\| Akkermansia muciniphila Derrien et al. 2004 emend. Hahnke et al. 2016\| Akkermansia sp. YL44\| ATCC BAA-835\| CIP 107961\| strain Muc	High Levels linked to long-lived individuals
Lentisphaerota [phylum]	\| Lentisphaerae\| Lentisphaerae Cho et al. 2004\| Lentisphaeraeota\| Lentisphaeraeota Oren et al. 2015\| Lentisphaerota
Parabacteroides goldsteinii [species]	\| ATCC BAA-1180\| Bacteroides goldsteinii\| Bacteroides goldsteinii Song et al. 2006\| Bacteroides sp. WAL 12034\| CCUG 48944\| DSM 19448\| JCM 13446\| Parabacteroides goldsteinii\| Parabacteroides goldsteinii (Song et al. 2006) Sakamoto and Benno 2006\| WAL 12034
Synergistota [phylum]	\| "Aminanaerobia" Hugenholtz\| Aminanaerobia\| Synergistaeota\| Synergistaeota Oren et al. 2015\| Synergistetes\| Synergistetes Jumas-Bilak et al. 2007 emend. 2009\| Synergistota
Mycoplasmatota [phylum]	\| Mollicutaeota\| Mollicutaeota Oren et al. 2015\| Mollicutota\| Tenericutes\| Tenericutes Murray 1984
Acidaminococcaceae [family]	\| Acidaminococcaceae\| Acidaminococcaceae Marchandin et al. 2010 emend. Campbell et al. 2015
Sutterellaceae [family]	\| Sutterellaceae\| Sutterellaceae Morotomi et al. 2011
Akkermansiaceae [family]	\| Akkermansiaceae\| Akkermansiaceae Hedlund and Derrien 2012
Selenomonadaceae [family]	\| Selenomonadaceae\| Selenomonadaceae Campbell et al. 2015
Odoribacteraceae [family]	\| Odoribacteraceae\| Odoribacteraceae Munoz et al. 2016 emend. Hahnke et al. 2016
Barnesiellaceae [family]	\| "Barnesiellaceae" Ormerod et al. 2016\| Barnesiellaceae
Dysgonomonadaceae [family]	\| "Dysgonamonadaceae" Ormerod et al. 2016\| Dysgonamonadaceae
Tannerellaceae [family]	\| "Tannerellaceae" Ormerod et al. 2016\| Tannerellaceae

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