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National Library of Medicine Citations for Chronic Obstructive Pulmonary Disease (COPD)

The following have had published studies. These are report on the averages of a group of patients; they do not apply to all patients and are not necessary predictive.

Some studies were done on people with specific conditions, ethnic origin or diet style (i.e. traditional Chinese Diet versus Western Diet), which may be why some shifts are in opposite directions.

See this post about overlapping bacteria/taxa and possible progression of conditions.

AI Engines For more Details: Perplexity  Kagi Labs  You 

Note these are associations and not causation. Items being high or low may be part of the immune response.

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⬆️ indicate a study reporting it is high. ⬇️ indicates a study reporting it is low. Names are indented according to taxonomy rank. Hover over to see rank.

Pseudomonadota   ⬆️    
Stenotrophomonas   ⬆️    
Haemophilus   ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️    
Haemophilus influenzae   ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️    
Haemophilus parainfluenzae   ⬆️    
Acinetobacter   ⬆️ ⬆️    
Moraxella   ⬆️    
Acinetobacter baumannii   ⬆️    
Acinetobacter calcoaceticus   ⬆️    
Moraxella catarrhalis   ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️    
Pseudomonas   ⬆️ ⬆️ ⬆️    
Pseudomonas aeruginosa   ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️    
Enterobacteriaceae     ⬇️  
Klebsiella pneumoniae   ⬆️ ⬆️    
Escherichia coli   ⬆️    
Neisseria   ⬆️   ⬇️  
Lautropia   ⬆️    
Simkania negevensis   ⬆️    
Chlamydia pneumoniae   ⬆️    
Bacteroidota   ⬆️    
Porphyromonas gingivalis   ⬆️    
Prevotella   ⬆️ ⬆️ ⬆️ ⬆️   ⬇️  
Prevotella melaninogenica     ⬇️ ⬇️  
Butyricimonas     ⬇️  
Paludibacter   ⬆️    
Actinomycetota   ⬆️    
Clostridia   ⬆️    
Oscillospiraceae     ⬇️  
Eubacterium     ⬇️  
Oscillibacter   ⬆️    
Flavonifractor   ⬆️    
Lawsonibacter   ⬆️    
Romboutsia   ⬆️ ⬆️    
Intestinibacter   ⬆️    
Peptostreptococcus     ⬇️  
Christensenellaceae     ⬇️  
Lachnospiraceae   ⬆️ ⬆️    
Lachnospira     ⬇️ ⬇️  
Coprococcus   ⬆️   ⬇️  
Lachnoclostridium     ⬇️  
Moryella   ⬆️    
Roseburia     ⬇️  
Marvinbryantia     ⬇️  
Faecalicatena   ⬆️    
Holdemanella   ⬆️    
Holdemania   ⬆️    
Acidaminococcaceae   ⬆️    
Dialister   ⬆️    
Veillonella   ⬆️ ⬆️ ⬆️ ⬆️   ⬇️  
Megasphaera   ⬆️    
Gemella   ⬆️ ⬆️    
Staphylococcus aureus   ⬆️ ⬆️ ⬆️ ⬆️ ⬆️    
Staphylococcus epidermidis   ⬆️    
Streptococcaceae   ⬆️    
Aerococcaceae     ⬇️  
Streptococcus   ⬆️ ⬆️   ⬇️ ⬇️  
Streptococcus salivarius   ⬆️    
Streptococcus pneumoniae   ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️    
Streptococcus parasanguinis   ⬆️    
Streptococcus vestibularis   ⬆️    
Streptococcus viridans   ⬆️    
Aerococcus   ⬆️ ⬆️    
Granulicatella   ⬆️    
Lactobacillus   ⬆️    
Scardovia   ⬆️    
Rothia   ⬆️    
Rothia mucilaginosa   ⬆️ ⬆️    
Brevibacterium aureum   ⬆️    
Corynebacterium   ⬆️    
Corynebacterium propinquum   ⬆️    
Streptomyces   ⬆️    
Mycoplasmoides pneumoniae   ⬆️    
Campylobacter   ⬆️    
Fusobacterium   ⬆️   ⬇️  
Rothia   ⬆️ ⬆️ ⬆️    
Ascomycota   ⬆️    
Basidiomycota   ⬆️    
Candida albicans   ⬆️    
Aspergillus   ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️    
Malassezia   ⬆️    

To see matches for your sample with the literature, raise display level.

Based on Clinical Studies in US National Libary of Medicine

For matching a percentile below 20% can be deemed to be low, and above 80% as high. These are arbitrary thresholds. In some cases, like for d-acidosis, it is the total from all bacteria that is important.

Reference Data
Tax Rank Tax Name Shift Percentile Distribution Citation Link
class Clostridia (NCBI:186801 ) High n/a Distribution    📚 PubMed
family Acidaminococcaceae (NCBI:909930 ) High n/a Distribution    📚 PubMed
family Aerococcaceae (NCBI:186827 ) Low n/a Distribution    📚 PubMed
family Christensenellaceae (NCBI:990719 ) Low n/a Distribution    📚 PubMed
family Enterobacteriaceae (NCBI:543 ) Low n/a Distribution    📚 PubMed
family Lachnospiraceae (NCBI:186803 ) High n/a Distribution    📚 PubMed
family Lachnospiraceae (NCBI:186803 ) High n/a Distribution    📚 PubMed
family Oscillospiraceae (NCBI:216572 ) Low n/a Distribution    📚 PubMed
family Streptococcaceae (NCBI:1300 ) High n/a Distribution    📚 PubMed
genus Acinetobacter (NCBI:469 ) High n/a Distribution    📚 PubMed
genus Acinetobacter (NCBI:469 ) High n/a Distribution    📚 PubMed
genus Aerococcus (NCBI:1375 ) High n/a Distribution    📚 PubMed
genus Aerococcus (NCBI:1375 ) High n/a Distribution    📚 PubMed
genus Aspergillus (NCBI:5052 ) High n/a Distribution    📚 PubMed
genus Aspergillus (NCBI:5052 ) High n/a Distribution    📚 PubMed
genus Aspergillus (NCBI:5052 ) High n/a Distribution    📚 PubMed
genus Aspergillus (NCBI:5052 ) High n/a Distribution    📚 PubMed
genus Aspergillus (NCBI:5052 ) High n/a Distribution    📚 PubMed
genus Aspergillus (NCBI:5052 ) High n/a Distribution    📚 PubMed
genus Butyricimonas (NCBI:574697 ) Low n/a Distribution    📚 PubMed
genus Campylobacter (NCBI:194 ) High n/a Distribution    📚 PubMed
genus Coprococcus (NCBI:33042 ) High n/a Distribution    📚 PubMed
genus Coprococcus (NCBI:33042 ) Low n/a Distribution    📚 PubMed
genus Corynebacterium (NCBI:1716 ) High n/a Distribution    📚 PubMed
genus Dialister (NCBI:39948 ) High n/a Distribution    📚 PubMed
genus Eubacterium (NCBI:1730 ) Low n/a Distribution    📚 PubMed
genus Faecalicatena (NCBI:2005359 ) High n/a Distribution    📚 PubMed
genus Flavonifractor (NCBI:946234 ) High n/a Distribution    📚 PubMed
genus Fusobacterium (NCBI:848 ) High n/a Distribution    📚 PubMed
genus Fusobacterium (NCBI:848 ) Low n/a Distribution    📚 PubMed
genus Gemella (NCBI:1378 ) High n/a Distribution    📚 PubMed
genus Gemella (NCBI:1378 ) High n/a Distribution    📚 PubMed
genus Granulicatella (NCBI:117563 ) High n/a Distribution    📚 PubMed
genus Haemophilus (NCBI:724 ) High n/a Distribution    📚 PubMed
genus Haemophilus (NCBI:724 ) High n/a Distribution    📚 PubMed
genus Haemophilus (NCBI:724 ) High n/a Distribution    📚 PubMed
genus Haemophilus (NCBI:724 ) High n/a Distribution    📚 PubMed
genus Haemophilus (NCBI:724 ) High n/a Distribution    📚 PubMed
genus Haemophilus (NCBI:724 ) High n/a Distribution    📚 PubMed
genus Holdemanella (NCBI:1573535 ) High n/a Distribution    📚 PubMed
genus Holdemania (NCBI:61170 ) High n/a Distribution    📚 PubMed
genus Intestinibacter (NCBI:1505657 ) High n/a Distribution    📚 PubMed
genus Lachnoclostridium (NCBI:1506553 ) Low n/a Distribution    📚 PubMed
genus Lachnospira (NCBI:28050 ) Low n/a Distribution    📚 PubMed
genus Lachnospira (NCBI:28050 ) Low n/a Distribution    📚 PubMed
genus Lactobacillus (NCBI:1578 ) High n/a Distribution    📚 PubMed
genus Lautropia (NCBI:47670 ) High n/a Distribution    📚 PubMed
genus Lawsonibacter (NCBI:2172004 ) High n/a Distribution    📚 PubMed
genus Malassezia (NCBI:55193 ) High n/a Distribution    📚 PubMed
genus Marvinbryantia (NCBI:248744 ) Low n/a Distribution    📚 PubMed
genus Megasphaera (NCBI:906 ) High n/a Distribution    📚 PubMed
genus Moraxella (NCBI:475 ) High n/a Distribution    📚 PubMed
genus Moryella (NCBI:437755 ) High n/a Distribution    📚 PubMed
genus Neisseria (NCBI:482 ) High n/a Distribution    📚 PubMed
genus Neisseria (NCBI:482 ) Low n/a Distribution    📚 PubMed
genus Oscillibacter (NCBI:459786 ) High n/a Distribution    📚 PubMed
genus Paludibacter (NCBI:346096 ) High n/a Distribution    📚 PubMed
genus Peptostreptococcus (NCBI:1257 ) Low n/a Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) High n/a Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) High n/a Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) High n/a Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) High n/a Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) Low n/a Distribution    📚 PubMed
genus Pseudomonas (NCBI:286 ) High n/a Distribution    📚 PubMed
genus Pseudomonas (NCBI:286 ) High n/a Distribution    📚 PubMed
genus Pseudomonas (NCBI:286 ) High n/a Distribution    📚 PubMed
genus Romboutsia (NCBI:1501226 ) High n/a Distribution    📚 PubMed
genus Romboutsia (NCBI:1501226 ) High n/a Distribution    📚 PubMed
genus Roseburia (NCBI:841 ) Low n/a Distribution    📚 PubMed
genus Rothia (NCBI:32207 ) High n/a Distribution    📚 PubMed
genus Rothia (NCBI:508215 ) High n/a Distribution    📚 PubMed
genus Rothia (NCBI:508215 ) High n/a Distribution    📚 PubMed
genus Rothia (NCBI:508215 ) High n/a Distribution    📚 PubMed
genus Scardovia (NCBI:196081 ) High n/a Distribution    📚 PubMed
genus Stenotrophomonas (NCBI:40323 ) High n/a Distribution    📚 PubMed
genus Streptococcus (NCBI:1301 ) High n/a Distribution    📚 PubMed
genus Streptococcus (NCBI:1301 ) High n/a Distribution    📚 PubMed
genus Streptococcus (NCBI:1301 ) Low n/a Distribution    📚 PubMed
genus Streptococcus (NCBI:1301 ) Low n/a Distribution    📚 PubMed
genus Streptomyces (NCBI:1883 ) High n/a Distribution    📚 PubMed
genus Veillonella (NCBI:29465 ) High n/a Distribution    📚 PubMed
genus Veillonella (NCBI:29465 ) High n/a Distribution    📚 PubMed
genus Veillonella (NCBI:29465 ) High n/a Distribution    📚 PubMed
genus Veillonella (NCBI:29465 ) High n/a Distribution    📚 PubMed
genus Veillonella (NCBI:29465 ) Low n/a Distribution    📚 PubMed
phylum Actinomycetota (NCBI:201174 ) High n/a Distribution    📚 PubMed
phylum Ascomycota (NCBI:4890 ) High n/a Distribution    📚 PubMed
phylum Bacteroidota (NCBI:976 ) High n/a Distribution    📚 PubMed
phylum Basidiomycota (NCBI:5204 ) High n/a Distribution    📚 PubMed
phylum Pseudomonadota (NCBI:1224 ) High n/a Distribution    📚 PubMed
species Acinetobacter baumannii (NCBI:470 ) High n/a Distribution    📚 PubMed
species Acinetobacter calcoaceticus (NCBI:471 ) High n/a Distribution    📚 PubMed
species Brevibacterium aureum (NCBI:233502 ) High n/a Distribution    📚 PubMed
species Candida albicans (NCBI:5476 ) High n/a Distribution    📚 PubMed
species Chlamydia pneumoniae (NCBI:83558 ) High n/a Distribution    📚 PubMed
species Corynebacterium propinquum (NCBI:43769 ) High n/a Distribution    📚 PubMed
species Escherichia coli (NCBI:562 ) High n/a Distribution    📚 PubMed
species Haemophilus influenzae (NCBI:727 ) High n/a Distribution    📚 PubMed
species Haemophilus influenzae (NCBI:727 ) High n/a Distribution    📚 PubMed
species Haemophilus influenzae (NCBI:727 ) High n/a Distribution    📚 PubMed
species Haemophilus influenzae (NCBI:727 ) High n/a Distribution    📚 PubMed
species Haemophilus influenzae (NCBI:727 ) High n/a Distribution    📚 PubMed
species Haemophilus influenzae (NCBI:727 ) High n/a Distribution    📚 PubMed
species Haemophilus influenzae (NCBI:727 ) High n/a Distribution    📚 PubMed
species Haemophilus influenzae (NCBI:727 ) High n/a Distribution    📚 PubMed
species Haemophilus influenzae (NCBI:727 ) High n/a Distribution    📚 PubMed
species Haemophilus influenzae (NCBI:727 ) High n/a Distribution    📚 PubMed
species Haemophilus influenzae (NCBI:727 ) High n/a Distribution    📚 PubMed
species Haemophilus influenzae (NCBI:727 ) High n/a Distribution    📚 PubMed
species Haemophilus influenzae (NCBI:727 ) High n/a Distribution    📚 PubMed
species Haemophilus influenzae (NCBI:727 ) High n/a Distribution    📚 PubMed
species Haemophilus influenzae (NCBI:727 ) High n/a Distribution    📚 PubMed
species Haemophilus influenzae (NCBI:727 ) High n/a Distribution    📚 PubMed
species Haemophilus influenzae (NCBI:727 ) High n/a Distribution    📚 PubMed
species Haemophilus influenzae (NCBI:727 ) High n/a Distribution    📚 PubMed
species Haemophilus influenzae (NCBI:727 ) High n/a Distribution    📚 PubMed
species Haemophilus influenzae (NCBI:727 ) High n/a Distribution    📚 PubMed
species Haemophilus influenzae (NCBI:727 ) High n/a Distribution    📚 PubMed
species Haemophilus influenzae (NCBI:727 ) High n/a Distribution    📚 PubMed
species Haemophilus influenzae (NCBI:727 ) High n/a Distribution    📚 PubMed
species Haemophilus influenzae (NCBI:727 ) High n/a Distribution    📚 PubMed
species Haemophilus influenzae (NCBI:727 ) High n/a Distribution    📚 PubMed
species Haemophilus influenzae (NCBI:727 ) High n/a Distribution    📚 PubMed
species Haemophilus parainfluenzae (NCBI:729 ) High n/a Distribution    📚 PubMed
species Klebsiella pneumoniae (NCBI:573 ) High n/a Distribution    📚 PubMed
species Klebsiella pneumoniae (NCBI:573 ) High n/a Distribution    📚 PubMed
species Moraxella catarrhalis (NCBI:480 ) High n/a Distribution    📚 PubMed
species Moraxella catarrhalis (NCBI:480 ) High n/a Distribution    📚 PubMed
species Moraxella catarrhalis (NCBI:480 ) High n/a Distribution    📚 PubMed
species Moraxella catarrhalis (NCBI:480 ) High n/a Distribution    📚 PubMed
species Moraxella catarrhalis (NCBI:480 ) High n/a Distribution    📚 PubMed
species Moraxella catarrhalis (NCBI:480 ) High n/a Distribution    📚 PubMed
species Moraxella catarrhalis (NCBI:480 ) High n/a Distribution    📚 PubMed
species Moraxella catarrhalis (NCBI:480 ) High n/a Distribution    📚 PubMed
species Moraxella catarrhalis (NCBI:480 ) High n/a Distribution    📚 PubMed
species Moraxella catarrhalis (NCBI:480 ) High n/a Distribution    📚 PubMed
species Moraxella catarrhalis (NCBI:480 ) High n/a Distribution    📚 PubMed
species Moraxella catarrhalis (NCBI:480 ) High n/a Distribution    📚 PubMed
species Moraxella catarrhalis (NCBI:480 ) High n/a Distribution    📚 PubMed
species Mycoplasmoides pneumoniae (NCBI:2104 ) High n/a Distribution    📚 PubMed
species Porphyromonas gingivalis (NCBI:837 ) High n/a Distribution    📚 PubMed
species Prevotella melaninogenica (NCBI:28132 ) Low n/a Distribution    📚 PubMed
species Prevotella melaninogenica (NCBI:28132 ) Low n/a Distribution    📚 PubMed
species Pseudomonas aeruginosa (NCBI:287 ) High n/a Distribution    📚 PubMed
species Pseudomonas aeruginosa (NCBI:287 ) High n/a Distribution    📚 PubMed
species Pseudomonas aeruginosa (NCBI:287 ) High n/a Distribution    📚 PubMed
species Pseudomonas aeruginosa (NCBI:287 ) High n/a Distribution    📚 PubMed
species Pseudomonas aeruginosa (NCBI:287 ) High n/a Distribution    📚 PubMed
species Pseudomonas aeruginosa (NCBI:287 ) High n/a Distribution    📚 PubMed
species Pseudomonas aeruginosa (NCBI:287 ) High n/a Distribution    📚 PubMed
species Pseudomonas aeruginosa (NCBI:287 ) High n/a Distribution    📚 PubMed
species Pseudomonas aeruginosa (NCBI:287 ) High n/a Distribution    📚 PubMed
species Pseudomonas aeruginosa (NCBI:287 ) High n/a Distribution    📚 PubMed
species Pseudomonas aeruginosa (NCBI:287 ) High n/a Distribution    📚 PubMed
species Pseudomonas aeruginosa (NCBI:287 ) High n/a Distribution    📚 PubMed
species Pseudomonas aeruginosa (NCBI:287 ) High n/a Distribution    📚 PubMed
species Pseudomonas aeruginosa (NCBI:287 ) High n/a Distribution    📚 PubMed
species Pseudomonas aeruginosa (NCBI:287 ) High n/a Distribution    📚 PubMed
species Rothia mucilaginosa (NCBI:43675 ) High n/a Distribution    📚 PubMed
species Rothia mucilaginosa (NCBI:43675 ) High n/a Distribution    📚 PubMed
species Simkania negevensis (NCBI:83561 ) High n/a Distribution    📚 PubMed
species Staphylococcus aureus (NCBI:1280 ) High n/a Distribution    📚 PubMed
species Staphylococcus aureus (NCBI:1280 ) High n/a Distribution    📚 PubMed
species Staphylococcus aureus (NCBI:1280 ) High n/a Distribution    📚 PubMed
species Staphylococcus aureus (NCBI:1280 ) High n/a Distribution    📚 PubMed
species Staphylococcus aureus (NCBI:1280 ) High n/a Distribution    📚 PubMed
species Staphylococcus epidermidis (NCBI:1282 ) High n/a Distribution    📚 PubMed
species Streptococcus parasanguinis (NCBI:1318 ) High n/a Distribution    📚 PubMed
species Streptococcus pneumoniae (NCBI:1313 ) High n/a Distribution    📚 PubMed
species Streptococcus pneumoniae (NCBI:1313 ) High n/a Distribution    📚 PubMed
species Streptococcus pneumoniae (NCBI:1313 ) High n/a Distribution    📚 PubMed
species Streptococcus pneumoniae (NCBI:1313 ) High n/a Distribution    📚 PubMed
species Streptococcus pneumoniae (NCBI:1313 ) High n/a Distribution    📚 PubMed
species Streptococcus pneumoniae (NCBI:1313 ) High n/a Distribution    📚 PubMed
species Streptococcus pneumoniae (NCBI:1313 ) High n/a Distribution    📚 PubMed
species Streptococcus pneumoniae (NCBI:1313 ) High n/a Distribution    📚 PubMed
species Streptococcus pneumoniae (NCBI:1313 ) High n/a Distribution    📚 PubMed
species Streptococcus salivarius (NCBI:1304 ) High n/a Distribution    📚 PubMed
species Streptococcus vestibularis (NCBI:1343 ) High n/a Distribution    📚 PubMed
species Streptococcus viridans (NCBI:78535 ) High n/a Distribution    📚 PubMed

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