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National Library of Medicine Citations for Systemic Lupus Erythematosus

The following have had published studies. These are report on the averages of a group of patients; they do not apply to all patients and are not necessary predictive.

Some studies were done on people with specific conditions, ethnic origin or diet style (i.e. traditional Chinese Diet versus Western Diet), which may be why some shifts are in opposite directions.

See this post about overlapping bacteria/taxa and possible progression of conditions.

AI Engines For more Details: Perplexity  Kagi Labs  You 

Note these are associations and not causation. Items being high or low may be part of the immune response.

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⬆️ indicate a study reporting it is high. ⬇️ indicates a study reporting it is low. Names are indented according to taxonomy rank. Hover over to see rank.

Pseudomonadota   ⬆️ ⬆️ ⬆️   ⬇️  
Fusobacteriota     ⬇️  
Synergistota     ⬇️  
Gammaproteobacteria   ⬆️    
Enterobacterales   ⬆️    
Succinivibrio   ⬆️    
Pseudomonas     ⬇️  
Enterobacteriaceae   ⬆️ ⬆️    
Escherichia   ⬆️    
Shigella   ⬆️    
Klebsiella   ⬆️ ⬆️    
Klebsiella oxytoca   ⬆️    
Neisseria   ⬆️    
Burkholderia pseudomallei   ⬆️    
Verrucomicrobiota     ⬇️  
Lentisphaerota     ⬇️  
Bacteroidota     ⬇️  
Bacteroidia     ⬇️  
Bacteroidaceae   ⬆️    
Rikenellaceae     ⬇️  
Porphyromonadaceae   ⬆️    
Prevotellaceae   ⬆️   ⬇️  
Prevotella   ⬆️ ⬆️ ⬆️   ⬇️  
Paraprevotella     ⬇️  
Odoribacter   ⬆️   ⬇️  
Coprobacter     ⬇️  
Parabacteroides   ⬆️    
Bacteroides   ⬆️ ⬆️    
Bacteroides fragilis   ⬆️    
Bacillota     ⬇️ ⬇️  
Actinomycetota     ⬇️  
Mycoplasmatota     ⬇️  
Bacilli   ⬆️    
Clostridia     ⬇️  
Ezakiella     ⬇️  
Eubacteriales     ⬇️  
Clostridiaceae   ⬆️    
Eubacterium   ⬆️ ⬆️    
Ruminococcus     ⬇️  
Faecalibacterium     ⬇️ ⬇️  
Flavonifractor   ⬆️ ⬆️    
Pseudoflavonifractor   ⬆️    
Ruminiclostridium cellulolyticum     ⬇️  
Clostridium   ⬆️ ⬆️    
Clostridium sp.   ⬆️    
Gemmiger     ⬇️  
Intestinimonas butyriciproducens   ⬆️    
Lachnospiraceae     ⬇️  
Lachnospira     ⬇️  
Coprococcus   ⬆️    
Roseburia     ⬇️ ⬇️  
Blautia   ⬆️   ⬇️  
Oribacterium   ⬆️    
Pseudobutyrivibrio     ⬇️  
Eisenbergiella     ⬇️  
Shuttleworthella satelles   ⬆️    
Mediterraneibacter gnavus   ⬆️    
Lacrimispora saccharolytica     ⬇️  
Lacrimispora xylanisolvens     ⬇️  
Dialister     ⬇️ ⬇️  
Veillonella   ⬆️ ⬆️ ⬆️     🧪 263244035 %ile
Megasphaera   ⬆️    
Lactobacillales   ⬆️    
Staphylococcus aureus   ⬆️ ⬆️ ⬆️ ⬆️    
Staphylococcus epidermidis   ⬆️    
Lactobacillaceae     ⬇️  
Enterococcaceae   ⬆️    
Streptococcus   ⬆️ ⬆️ ⬆️ ⬆️ ⬆️    
Lactobacillus   ⬆️   ⬇️ ⬇️  
Lactobacillus johnsonii     ⬇️  
Enterococcus   ⬆️    
Cyanobacteriota     ⬇️  
Actinomycetes     ⬇️  
Actinomyces massiliensis   ⬆️    
Bifidobacterium     ⬇️  
Brevibacterium casei   ⬆️    
Corynebacterium sp.   ⬆️    
Mycobacterium   ⬆️    
Rhodococcus   ⬆️ ⬆️    
Propionibacterium   ⬆️    
Eggerthella   ⬆️ ⬆️ ⬆️    
Lancefieldella rimae   ⬆️    
Ureaplasma urealyticum   ⬆️    
Mycoplasma   ⬆️ ⬆️    
Bilophila   ⬆️    
Desulfovibrio     ⬇️  
Campylobacter   ⬆️ ⬆️    
Fusobacterium   ⬆️    
Euryarchaeota     ⬇️  
Rothia   ⬆️    
Rhodococcus   ⬆️    
Candida albicans   ⬆️    
Cryptococcus   ⬆️    

To see matches for your sample with the literature, raise display level.

Based on Clinical Studies in US National Libary of Medicine

For matching a percentile below 20% can be deemed to be low, and above 80% as high. These are arbitrary thresholds. In some cases, like for d-acidosis, it is the total from all bacteria that is important.

Reference Data
Tax Rank Tax Name Shift Percentile Distribution Citation Link
class Actinomycetes (NCBI:1760 ) Low n/a Distribution    📚 PubMed
class Bacilli (NCBI:91061 ) High n/a Distribution    📚 PubMed
class Bacteroidia (NCBI:200643 ) Low n/a Distribution    📚 PubMed
class Clostridia (NCBI:186801 ) Low n/a Distribution    📚 PubMed
class Gammaproteobacteria (NCBI:1236 ) High n/a Distribution    📚 PubMed
family Bacteroidaceae (NCBI:815 ) High n/a Distribution    📚 PubMed
family Catabacteriaceae (NCBI:424536 ) Low n/a Distribution    📚 PubMed
family Clostridiaceae (NCBI:31979 ) High n/a Distribution    📚 PubMed
family Enterobacteriaceae (NCBI:543 ) High n/a Distribution    📚 PubMed
family Enterococcaceae (NCBI:81852 ) High n/a Distribution    📚 PubMed
family Lachnospiraceae (NCBI:186803 ) Low n/a Distribution    📚 PubMed
family Lactobacillaceae (NCBI:33958 ) Low n/a Distribution    📚 PubMed
family Porphyromonadaceae (NCBI:171551 ) High n/a Distribution    📚 PubMed
family Prevotellaceae (NCBI:171552 ) High n/a Distribution    📚 PubMed
family Prevotellaceae (NCBI:171552 ) Low n/a Distribution    📚 PubMed
family Rikenellaceae (NCBI:171550 ) Low n/a Distribution    📚 PubMed
family Ruminococcaceae (NCBI:541000 ) Low n/a Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) High n/a Distribution    📚 PubMed
genus Bifidobacterium (NCBI:1678 ) Low n/a Distribution    📚 PubMed
genus Bilophila (NCBI:35832 ) High n/a Distribution    📚 PubMed
genus Blautia (NCBI:572511 ) High n/a Distribution    📚 PubMed
genus Blautia (NCBI:572511 ) Low n/a Distribution    📚 PubMed
genus Campylobacter (NCBI:194 ) High n/a Distribution    📚 PubMed
genus Clostridium (NCBI:1485 ) High n/a Distribution    📚 PubMed
genus Coprobacter (NCBI:1348911 ) Low n/a Distribution    📚 PubMed
genus Coprococcus (NCBI:33042 ) High n/a Distribution    📚 PubMed
genus Cryptococcus (NCBI:5206 ) High n/a Distribution    📚 PubMed
genus Desulfovibrio (NCBI:872 ) Low n/a Distribution    📚 PubMed
genus Dialister (NCBI:39948 ) Low n/a Distribution    📚 PubMed
genus Eggerthella (NCBI:84111 ) High n/a Distribution    📚 PubMed
genus Eisenbergiella (NCBI:1432051 ) Low n/a Distribution    📚 PubMed
genus Enterococcus (NCBI:1350 ) High n/a Distribution    📚 PubMed
genus Escherichia (NCBI:561 ) High n/a Distribution    📚 PubMed
genus Eubacterium (NCBI:1730 ) High n/a Distribution    📚 PubMed
genus Ezakiella (NCBI:1582879 ) Low n/a Distribution    📚 PubMed
genus Faecalibacterium (NCBI:216851 ) Low n/a Distribution    📚 PubMed
genus Flavonifractor (NCBI:946234 ) High n/a Distribution    📚 PubMed
genus Fusobacterium (NCBI:848 ) High n/a Distribution    📚 PubMed
genus Gemmiger (NCBI:204475 ) Low n/a Distribution    📚 PubMed
genus Klebsiella (NCBI:570 ) High n/a Distribution    📚 PubMed
genus Lachnospira (NCBI:28050 ) Low n/a Distribution    📚 PubMed
genus Lactobacillus (NCBI:1578 ) High n/a Distribution    📚 PubMed
genus Lactobacillus (NCBI:1578 ) Low n/a Distribution    📚 PubMed
genus Megasphaera (NCBI:906 ) High n/a Distribution    📚 PubMed
genus Mycobacterium (NCBI:1763 ) High n/a Distribution    📚 PubMed
genus Mycoplasma (NCBI:2093 ) High n/a Distribution    📚 PubMed
genus Neisseria (NCBI:482 ) High n/a Distribution    📚 PubMed
genus Odoribacter (NCBI:283168 ) High n/a Distribution    📚 PubMed
genus Odoribacter (NCBI:283168 ) Low n/a Distribution    📚 PubMed
genus Oribacterium (NCBI:265975 ) High n/a Distribution    📚 PubMed
genus Parabacteroides (NCBI:375288 ) High n/a Distribution    📚 PubMed
genus Paraprevotella (NCBI:577309 ) Low n/a Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) High n/a Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) Low n/a Distribution    📚 PubMed
genus Propionibacterium (NCBI:1743 ) High n/a Distribution    📚 PubMed
genus Pseudobutyrivibrio (NCBI:46205 ) Low n/a Distribution    📚 PubMed
genus Pseudoflavonifractor (NCBI:1017280 ) High n/a Distribution    📚 PubMed
genus Pseudomonas (NCBI:286 ) Low n/a Distribution    📚 PubMed
genus Rhodococcus (NCBI:1827 ) High n/a Distribution    📚 PubMed
genus Rhodococcus (NCBI:1661425 ) High n/a Distribution    📚 PubMed
genus Roseburia (NCBI:841 ) Low n/a Distribution    📚 PubMed
genus Rothia (NCBI:508215 ) High n/a Distribution    📚 PubMed
genus Ruminococcus (NCBI:1263 ) Low n/a Distribution    📚 PubMed
genus Shigella (NCBI:620 ) High n/a Distribution    📚 PubMed
genus Streptococcus (NCBI:1301 ) High n/a Distribution    📚 PubMed
genus Succinivibrio (NCBI:83770 ) High n/a Distribution    📚 PubMed
genus Veillonella (NCBI:29465 ) High n/a Distribution    📚 PubMed
order Enterobacterales (NCBI:91347 ) High n/a Distribution    📚 PubMed
order Eubacteriales (NCBI:186802 ) Low n/a Distribution    📚 PubMed
order Lactobacillales (NCBI:186826 ) High n/a Distribution    📚 PubMed
phylum Actinomycetota (NCBI:201174 ) Low n/a Distribution    📚 PubMed
phylum Bacillota (NCBI:1239 ) Low n/a Distribution    📚 PubMed
phylum Bacteroidota (NCBI:976 ) Low n/a Distribution    📚 PubMed
phylum Cyanobacteriota (NCBI:1117 ) Low n/a Distribution    📚 PubMed
phylum Euryarchaeota (NCBI:28890 ) Low n/a Distribution    📚 PubMed
phylum Fusobacteriota (NCBI:32066 ) Low n/a Distribution    📚 PubMed
phylum Lentisphaerota (NCBI:256845 ) Low n/a Distribution    📚 PubMed
phylum Mycoplasmatota (NCBI:544448 ) Low n/a Distribution    📚 PubMed
phylum Pseudomonadota (NCBI:1224 ) High n/a Distribution    📚 PubMed
phylum Pseudomonadota (NCBI:1224 ) Low n/a Distribution    📚 PubMed
phylum Synergistota (NCBI:508458 ) Low n/a Distribution    📚 PubMed
phylum Verrucomicrobiota (NCBI:74201 ) Low n/a Distribution    📚 PubMed
species Actinomyces massiliensis (NCBI:461393 ) High n/a Distribution    📚 PubMed
species Bacteroides fragilis (NCBI:817 ) High n/a Distribution    📚 PubMed
species Brevibacterium casei (NCBI:33889 ) High n/a Distribution    📚 PubMed
species Burkholderia pseudomallei (NCBI:28450 ) High n/a Distribution    📚 PubMed
species Candida albicans (NCBI:5476 ) High n/a Distribution    📚 PubMed
species Clostridium sp. (NCBI:1506 ) High n/a Distribution    📚 PubMed
species Corynebacterium sp. (NCBI:1720 ) High n/a Distribution    📚 PubMed
species Intestinimonas butyriciproducens (NCBI:1297617 ) High n/a Distribution    📚 PubMed
species Klebsiella oxytoca (NCBI:571 ) High n/a Distribution    📚 PubMed
species Lacrimispora saccharolytica (NCBI:84030 ) Low n/a Distribution    📚 PubMed
species Lacrimispora xylanisolvens (NCBI:384636 ) Low n/a Distribution    📚 PubMed
species Lactobacillus johnsonii (NCBI:33959 ) Low n/a Distribution    📚 PubMed
species Lancefieldella rimae (NCBI:1383 ) High n/a Distribution    📚 PubMed
species Mediterraneibacter gnavus (NCBI:33038 ) High n/a Distribution    📚 PubMed
species Ruminiclostridium cellulolyticum (NCBI:1521 ) Low n/a Distribution    📚 PubMed
species Shuttleworthella satelles (NCBI:177972 ) High n/a Distribution    📚 PubMed
species Staphylococcus aureus (NCBI:1280 ) High n/a Distribution    📚 PubMed
species Staphylococcus epidermidis (NCBI:1282 ) High n/a Distribution    📚 PubMed
species Ureaplasma urealyticum (NCBI:2130 ) High n/a Distribution    📚 PubMed

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